2816 J ournal of Medicinal Chemistry, 1997, Vol. 40, No. 18
Silverman et al.
gradient protocol: 0-5 min, solvent A (0.06% TFA in water);
5-60 min, linear gradient from solvent A to solvent B (0.05%
TFA in acetonitrile).
Chiral HPLC was carried out on a Beckman System Gold
HPLC with a 150 × 4.0 mm Crownpak CR (+) column (Chiral
Technologies, Inc., Exton, PA) using a gradient of 100% solvent
A to 90% solvent A/10% solvent B over 30 min at a flow rate
of 0.5 mL/min. Solvent A is water taken to pH 2.0 with
perchloric acid, and solvent B is methanol.
En zym e P r ep a r a tion . nNOS was obtained from bovine
brain as described.19 A typical preparation had a specific
activity of 250 nmol of nitric oxide (mg of protein)-1 min-1 at
30 °C. iNOS was purified according to the procedures of Hevel
et al.31 with a specific activity of 500 nmol of nitric oxide (mg
of protein)-1 min-1 at 30 °C. eNOS, expressed in Escherichia
coli, was purified as described and supplemented with L-
arginine and BH4;32 the specific activity was 235 nmol of NO
mg-1 min-1 at 25 °C.
Ch em ica l Syn th esis. N-Boc-d ip ep tid e Meth yl Ester .
N-Boc-protected amino acid (1.5 mmol), amino acid methyl
ester (1.5 mmol), HOBT (1.5 mmol), and EDC (1.65 mmol) were
mixed at 0 °C (ice-water bath) in freshly distilled methylene
chloride (4 mL). The suspension was stirred for 10 min to
which was added dropwise DIEA (3.0 mmol) under N2. The
mixture was stirred for 2 h from 0 °C to room temperature.
Shorter reaction time and concentrated reaction solution
helped to minimize the chance of racemization. A large
amount of water (30 mL) was added to quench the reaction;
then the crude product was extracted with ethyl acetate (30
mL). After being washed sequentially with water (30 mL),
5% (v/v) HCl solution (2 × 20 mL), water (20 mL), 5% (w/v)
NaHCO3 solution (2 × 20 mL), water (20 mL), and saturated
NaCl solution (20 mL), the organic layer was dried over
MgSO4. Crude dipeptide was obtained as a white powder by
rotary evaporation of the ethyl acetate solution. The powder
was dissolved in CHCl3 and loaded onto a silica gel column (3
× 50 cm). Pure N-Boc-dipeptide methyl ester was eluted with
20:1 CHCl3/CH3OH, monitoring by TLC. The yields were
about 50%.
N-Boc-d ip ep tid e Ben zyl Ester . To a stirred suspension
of amino acid benzyl ester (1.5 mmol) and N-Boc-amino acid
(1.3 equiv) in 2 mL of CH2Cl2 at 0 °C was added a methylene
chloride solution (2 mL) of HBTU/HOBT (1.3 equiv each). After
the mixture stirred for a few more minutes, 6 equiv of DIEA
was added dropwise under N2. The reaction mixture became
homogenous after 2 h. Ethyl acetate was added to dilute the
reaction solution, and the same workup procedure was per-
formed as described above.
An a lytica l Bioch em ica l Meth od s. Nitric oxide formation
was measured using the hemoglobin capture assay.33 A typical
assay mixture for nNOS contained 3-15 µM L-arginine, 1.6
mM CaCl2, 11.6 µg/mL calmodulin, 100 µM DTT, 100 µM
NADPH, 6.5 µM BH4, and 3 mM oxyhemoglobin in 100 mM
Hepes (pH 7.5). The reaction mixture for iNOS assay included
10-60 µM L-arginine, 100 µM DTT, 100 µM NADPH, 6.5 µM
BH4, and 3 µM oxyhemoglobin in 100 mM Hepes (pH 7.5). The
production of nitric oxide by eNOS was measured as de-
scribed.34 Briefly, the assay mixture contained 80 µM oxyhe-
moglobin, 3-25 µM L-arginine, 100 µM DTT, 10 µM CaCl2, 1
µg/mL calmodulin, 5 µM BH4, 100 µM NADPH, and 50 mM
Hepes (pH 7.5). All assays were in a final volume of 600 µL
and were initiated with enzyme. Nitric oxide reacts with
oxyHb to yield methemoglobin which is detected at 401 nm (ꢀ
35
) 19 700 M-1 cm-1
)
on a Perkin-Elmer Lambda 1 UV/vis
spectrophotometer. The concentration of arginine is higher
for iNOS than for nNOS or eNOS because there is substrate
inhibition with nNOS and eNOS but not iNOS. Protein
concentration of enzyme was determined with the Bradford
Assay (Bio-Rad) using bovine serum albumin as the standard.
In h ibition Meth od s. The reversible inhibition of NOS by
the dipeptide analogues was studied under initial rate condi-
tions with the hemoglobin assay as described above. The Ki
values were determined from Dixon plots29 with various
L-arginine and inhibitor concentrations. The type of reversible
inhibition was determined from Cornish-Bowden replots30 of
the data in the Dixon plots.
Ackn owledgm en t. We thank Francisco Javier Blan-
co for his preliminary work on this project. We are
grateful to the National Institutes of Health for financial
support of this work to R.B.S. (GM49725) and M.A.M.
(CA50414) and to the National Institutes of Health
(GM52419) and the Robert A. Welch Foundation (AQ-
1192) for financial support to Bettie Sue Siler Masters
(University of Texas Health Science Center) in whose
lab P.M. expressed and purified the E. coli eNOS used
in these studies.
Dip ep t id e E st er s 4-12. The Boc groups of the methyl
ester- and benzyl ester-protected dipeptides were removed by
TFA or HCl (3 N in ethyl acetate). The Boc-protected amino
acid ester was treated with acid (3 mL). The solution was
stirred for 1 h (shorter time for HCl deprotection) under N2.
The acid was evaporated at room temperature, and the residue
was dissolved in water (10 mL). The aqueous solution was
washed with ethyl ether (3 × 10 mL) and vacuum evaporated.
When it was difficult to remove the water, the oily residue
was dissolved in methanol and evaporated. The yield from
the deprotection step was about 80%. The TFA or HCl salts
of the dipeptide esters were used for all of the elemental
analyses. The analytical data for the compounds are listed in
Table 1.
Su ppor tin g In for m ation Available: Dixon and Cornish-
Bowden plots for the competitive inhibition of nNOS by
D-phenylalanyl-D-nitroarginine methyl ester (12) and for the
uncompetitive inhibition of iNOS by D-nitroargininyl-D-phe-
nylalanine methyl ester (9) (4 pages). Ordering information
is given on any current masthead page.
Dip ep tid es 1, 2, a n d 13. To a solution of N-Boc-dipeptide
methyl ester (1 mmol) in methanol (5 mL) was added 1 N
NaOH solution (10 mL). The mixture was stirred for 2 h at
room temperature, and then the methanol was evaporated.
The aqueous solution was washed with ethyl acetate (2 × 10
mL) and acidified with 1 N citric acid. The precipitate that
formed was extracted with ethyl acetate (2 × 20 mL). The
extract was washed with water (2 × 20 mL) and dried over
MgSO4. The N-Boc-dipeptide acid was obtained in a yield of
70% after evaporation of the solvent. A further deprotection
of the Boc group by TFA or HCl was carried out as described
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above. Only D-Phe-D-ArgNO (13) was chromatographed on
2
Dowex 50 X8 (H+ form) 200-400 mesh. The zwitterion was
eluted with 0.25 N NH4OH, lyophilized, and used for elemental
analysis. The analytical data for these compounds are listed
in Table 1.
Gen er a l Bioch em ica l Meth od s. Rea gen ts. L-Arginine,
human ferrous hemoglobin A0, NADPH, CaCl2, and calmodulin
were purchased from Sigma Chemical Co. (St. Louis, MO).
(6R)-5,6,7,8-Tetrahydro-L-biopterin (BH4) was obtained from
B. Schircks Laboratories (J ona, Switzerland) or Alexis Bio-
chemicals (San Diego, CA). Dithiothreitol (DTT) and Hepes
were purchased from Fischer.
(6) Ferrendelli, J . A.; Blank, A. C.; Gross, R. A. Relationships
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