2
J. Zhang et al. / Bioorg. Med. Chem. Lett. xxx (2016) xxx–xxx
Table 2
N
Cl
2-Piperazinyl-pyridopyrimidin-7-ones
5
4
N
N
NH
N
H
N
3
6
N
N
2
R2
R3
7
Cl
O
S
N
N
1
N
Me
PD173955
O
H
N
6
R2
Imatinib
N
2
N
N
O
N
R1
Figure 1. Structure of Imatinib and PD173955.
(X)
R2 R3
when the hydrogen of (7) was replaced with isopropyl group to
give 10 (0–90%). Good activity of substituted benzyl analogs 11
and 12 (3,4-diCl, 50% and 3,4-diF-, 73%, respectively) was main-
tained, although not as active as the unsubstituted benzyl analog
10 (90%).
Entry R1
Ab40 (%)
Notch1
inhibitiona
processingb
13
4-F-Ph-
H
t-
Bu
Cl
H
H
H
2
n.t.
14
15
16
17
18
19
4-F-Ph-
4-F-Ph-
4-F-Ph-
CH3
H
F
Cl
Cl
H
Cl
0
n.t
Examples of replacing R1 and R2 of (I) with a 4-substituted
piperazine ring are illustrated in Table 2. Activity was increased
significantly with a 4-F-phenyl-substituted piperazine ring (16,
68%) and a 2,6-dichloro-phenyl group at C-6.
20
68
0
14
0
Inhibition
No change
No change
Inhibition
n.t.
4-F-Ph
H
H
2-Tetrahydrofuran-
methyl
Similar to phenyl pyridopyrimidinone 10, this piperazinyl pyri-
dopyrimidinone 16 also had very good Ab40 inhibition. Evaluation
of selected drug-like properties (e.g., solubility, LogD, plasma pro-
tein binding, permeability, and human and rodent microsomal sta-
bility) of each of these two compounds was performed. These
results indicated that 16 had a slightly better drug-like profile
and thus, was further tested in an Ab42 cellular assay along with
other analogs. Pyridopyrimidinone 16 showed inhibition in cells
20
21
22
2-Pyridinyl
Cl
Cl
Cl
H
H
H
0
0
0
n.t.
n.t.
n.t.
2-Pyrimindyl
3-Pyridinyloxyl
a,bSee Table 1 and Refs. 15,20.
n.t. = not tested.
compounds were prepared as shown in Scheme 1. The preparation
of these pyridopyrimidinones typically requires an eight-step syn-
thesis beginning with commercially available 4-chloro-2-thio-
methyl-5-pyrimidine-carboxylate ethyl ester (II) which is first
converted to the corresponding methylamine and then subse-
quently reduced with lithium aluminum hydride to yield alcohol
(III). Oxidation of (III) with manganese oxide gave intermediate
2-thiomethyl-pyrimidine-5-carboxaldehyde (IV). Condensation of
aldehyde (IV) with 2,6-dichlorophenyl-acetonitrile provided pyr-
ido[2,3-d]pyrimidin-7-ylideneamine (V). Acylation of (V) gave 7-
N-acetylimine (VI) which was readily hydrolyzed to yield methyl-
sulfide intermediate (VII). Subsequent oxidation of (VII) with m-
chloro-perbenzoic acid provided sulfonyl pyridopyrimidinone
(VIII). Refluxing (VIII) with selected amines in DMF or neat led to
the production of the desired 2-amino pyridopyrimidinones (I) in
good yields, ranging from 50% (6) to 95% (4).
(Ab42) with an IC50 = 2.7 lM, (see Supplemental data).
Additional piperazinyl pyridopyrimidinone analogs were syn-
thesized as illustrated in Table 2. An unsubstituted phenyl ring
(18, 14%) or other substitutions such as 2,6-diF- (15, 20%), 4-Cl-
(14, 0%), and 4-t-butyl- (13, 2%) on the phenyl ring at C-6 dimin-
ished activity. Additionally, replacing the 4-F-phenyl ring (R1) of
16 with a simple methyl group (17) and with various heterocycles
(19–22) all yielded 0% inhibition of Ab40.
The general synthetic routes to obtain 2-aminopyrido[2,3-d]
pyrimidin-7-one analog (I) are described by several research
teams.12–14 According to these reported methods, some of our
Table 1
2-Amino-6-(2,6-dichlorophenyl)-pyrido[2,3-d]-pyrimidin-7-ones
Cl
This original eight-step reported synthesis illustrated in
Scheme 1 worked well, but the route was inconvenient for further
variation on the C-6 position. To simplify the synthesis, we devel-
oped a novel method to prepare key intermediate pyridopyrimidi-
N
6
R1
Cl
N
2
N
N
O
R2
(I)
none (VII) in four steps rather than
5 steps. Methylsulfide
intermediate (VII) was easily obtained by the condensation of 5-
pyrimidinecarboxyaldehyde (IV) with readily available substituted
phenylacetates in DMF in the presence of Cs2CO3 at room temper-
ature or under refluxing conditions. This improved synthetic
method, a total of 6 steps rather than eight steps, was used to pre-
pare compounds 3 and 4 (Table 1) and 13–22 (Table 2).
As a means of reducing the molecular weight of the target pyri-
dopyrimidinone compounds as well as to explore the role of the C-
6 aryl group, compound 23 was synthesized from 8-methyl-2-
(methylsulfonyl)pyrido[2,3-d]pyrimidin-7(8H)-one (IX, Scheme 2).
Pyridopyrimidinone (IX) was prepared from intermediate (IV)
according to a reported method.14
Entry
R1
R2
Ab40 (%)
Notch1
inhibitiona
processingb
PD173955
H
H
H
H
H
H
H
H
H
3-(CH3S)Ph-
4-(CH3O)Ph-
4-(CH3S)Ph-
Ph-
4-(CF3)Ph-
i-Pr
n-Hexyl
PhCH2-
(2-Pyridinyl)
CH2-
0
47
47
26
12
0
53
0
59
No change
No change
No change
n.t.
1
2
3
4
5
6
7
8
n.t.
No change
Inhibition
n.t.
No change
9
CH3 Ph(CH2)2-
i-Pr PhCH2-
i-Pr (3,4-Cl2Ph)CH2- 50
i-Pr (3,5-F2Ph)CH2- 73
48
90
No change
No change
No change
Inhibition
10
11
12
This series of pyridopyrimidinones were evaluated for their
inhibition of
purified human
strate C100Flag.15–21 Effects of these compounds on
c
-secretase-mediated Ab40 production by ELISA using
-secretase complexes and recombinant APP sub-
-secretase-
c
n.t. = not tested.
a,bSee Refs. 15,20.
c
a
Compounds were tested at the concentration of 100
production is a percentage of DMSO control.
Compounds were tested at the concentration of 100 lM. The effects on Notch1
processing are compared to DMSO control; No change: Notch1 processing was not
l
M. The inhibition of Ab40
mediated processing of Notch1 were examined by Western blot
analysis using recombinant substrate N100Flag as previously
reported.21 Compounds with at least a 50% inhibition in the Ab40
ELISA were chosen for evaluation of Notch1 processing.
b
affected by the tested compounds at the concentration of 100 M.
l