Research Article
Received: 29 November 2011
Revised: 4 January 2012
Accepted: 10 January 2012
Published online in Wiley Online Library: 19 March 2012
(wileyonlinelibrary.com) DOI 10.1002/psc.2401
Native chemical ligation in dimethylformamide
can be performed chemoselectively
without racemization
Marc Dittmann,a Muheeb Sadek,a,b Ralf Seidela and Martin Engelharda*
Native chemical ligation of unprotected peptides in organic solvents has been previously reported as a fast, efficient, and
suitable method for coupling of hydrophobic peptides. However, it has not been determined whether the reaction can be
carried out without possible side reactions or racemization. Here, we present a study on the chemoselectivity of this method
by model reactions designed to test the reactivity of Arg and Lys side chains as well as that of a-amino groups. A possible
racemization of the C-terminal amino acid of the N-terminal peptide was also investigated. The results show that ligation in
organic solvents can be conducted chemoselectively without side reactions with other nucleophilic groups. Furthermore, no
racemization of the C-terminal amino acid was observed if both educts were added simultaneously. Thus, native chemical
ligation can be performed either in aqueous buffer systems or in organic solvents paving the way for the synthesis of larger
hydrophobic peptides and/or membrane proteins. Copyright © 2012 European Peptide Society and John Wiley & Sons, Ltd.
Keywords: native chemical ligation in organic solvents; peptide synthesis; hydrophobic peptides; racemization
of possible side reactions has not been addressed so far. For
a general application of NCL in organic solvents, it is manda-
Introduction
Native chemical ligation (NCL) is based on a thioester-
mediated chemoselective reaction of two unprotected
peptide segments resulting in a native peptide bond at the
ligation site [1]. To undergo NCL, the N-terminal peptide has
to possess a C-terminal thioester, whereas the C-terminal
peptide contains an N-terminal Cys. During the past 15 years,
NCL has been developed into a routinely used tool for the
synthesis of proteins soluble in aqueous buffers [2] that even
allowed the synthesis and chemical modification of proteins
of up to 304 amino acids [3]. However, ligation of hydropho-
bic peptides and/or proteins such as membrane proteins
is hampered by their low solubility and their tendency to
aggregate under standard aqueous conditions [4,5]. Various
attempts have been published to overcome these difficulties
utilizing aqueous buffer systems. For example, ligations have
been carried out in the presence of organic solvents, denatur-
ants such as urea or guanidinium salts, and/or detergents
such as DDM, SDS, and DPC [6–11]. However, a more general
method is not yet available.
tory that the ligation has to proceed chemoselectively in the
presence of other nucleophilic groups. Furthermore, during
activation of the a-COOH of the unprotected N-terminal pep-
tide, organic bases might trigger racemization at this site. Here,
we demonstrate that NCL in organic solvents is chemoselective
and occurs without racemization.
Materials and Methods
Boc-L-Leu-Pam resin was obtained from NeoMPS (Strasbourg,
France). Boc-protected amino acids and HBTU were purchased
from Merck Chemicals (Nottingham, UK). DCM and DMF
were obtained from Applied Biosystems (Darmstadt, Germany).
TFA was purchased from Roth (Karlsruhe, Germany). All other
chemicals were obtained from Sigma Aldrich (Taufkirchen,
Germany) with the highest purity available.
Synthesized peptides were analyzed by RP-HPLC on a
Beckman (Krefeld, Germany; System Gold; modules 126, 168
Recently, we have described NCL of model peptides in organic
solvents under purely anhydrous conditions (Figure 1) [12]. In
this work, it has been shown that DMF readily solubilizes hydro-
phobic peptides, and in the presence of a base, like TEA as well as
thiol additives, a fast and efficient NCL is observed. To improve the
solubility of hydrophobic products, different other additives were
also tested (e.g. a-cyclodextrin, sodium trifluoroacetate, and
lithium chloride [14,15]). Best results regarding solubility and
yields were obtained with thiophenol in the presence of LiCl.
Under these conditions, the reaction was already completed in
less than 3 h.
*
Correspondence to: Martin Engelhard, Max Planck Institute of Molecular
Physiology, Otto Hahn Str. 11, 44227 Dortmund, Germany. E-mail: martin.
a Max Planck Institute of Molecular Physiology, Otto Hahn Str. 11, 44227
Dortmund, Germany
b Present address: Institut für Organische und Biomolekulare Chemie, Georg-
August-Universität Göttingen, Tammannstr. 2, 37077 Göttingen, Germany
Abbreviations used: DDM, n-dodecyl-b-D-maltoside; DPC, dodecylphosphocho-
line; HBTU, O-benzotriazole-N,N,N,N-tetramethyl-uronium-hexafluorophosphate;
Leu, L-leucyl; MPAA, (4-carboxylmethyl) thiophenol; NCL, native chemical ligation;
SLeu, ÀSCH2COLeu; TEA, triethylamine; TFA, trifluoroacetic acid.
Although these results demonstrate that NCL can be
performed in organic solvents with high yields, the question
J. Pept. Sci. 2012; 18: 312–316
Copyright © 2012 European Peptide Society and John Wiley & Sons, Ltd.