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4.1.3.2. (E)-2-(6-Fluoro-2-methyl-3-(4-(methylsulfonyl)benzyli-
dene)-3H-inden-1-yl) acetic acid (tert-butyldimethylsilyl)hydrox-
yamide (5). The title compound was prepared from carboxylic acid
a following the general procedure. The crude product was purified
by flash chromatography on silica gel using hexane-ethyl acetate 4/
4.2.2. Cell viability assay
Pancreatic or colon cancer cells (2e5 ꢂ 103/well) were seeded
into 96-well microtiter plates and received compounds from 5 to
200
mM for 72 h. Following drug exposure, cell viability was
assessed using a method based on the cleavage of the tetrazolium
salt WST-1 to formazan by mitochondrial dehydrogenase activity
(Cell proliferation reagent WST-1; Roche, Mannheim, Germany).
Inhibition of proliferation was reported as the percentage reduction
of UV absorbance of treated cells versus control cultures and the
concentration of compounds that decreased cell viability by 50%
(IC50) was calculated by non-linear least squares curve fitting
(GraphPad Software, San Diego, CA, USA). DMSO concentration in
the culture medium never exceeded 0.2%.
6 v/v to give 5 as a yellow oil, yield 40%; 1H NMR (CDCl3,
d ppm):
7.97e7.93 (m, 2H); 7.72e7.68 (m, 2H); 7.19e7.10 (m, 2H); 6.94e6.83
(m, 1H); 3.58 (s, 2H); 3.11 (s, 3H); 2.21 (s, 3H); 0.91 (s, 9H); 0.14 (s,
6H). Anal. Calcd for C25H32FNO4SSi: C, 61.32; H, 6.59; N, 2.86.
Found: C, 61.13; H, 6.42; N, 2.70.
4.1.3.3. (Z)-2-(6-Fluoro-2-methyl-3-(4-(methylthio)benzylidene)-3H-
inden-1-yl) acetic acid (tert-butyldimethylsilyl)hydroxyamide (6). The
title compound was prepared from carboxylic acid a following the
general procedure. The crude product was purified by flash chroma-
tography on silica gel using hexane-ethyl acetate 4/6 v/v to give 6 as
4.2.3. Caspase activity assay
Enzyme activity was assayed by the Apo-ONEÔ Homogeneous
Caspase 3/7 assay (Promega, Madison, WI, USA). Briefly, cells were
a yellow oil, yield 40%; 1H NMR (CDCl3,
d ppm): 7.71e7.30 (m, 4H); 7.15
(s, 2H); 6.89e6.83 (m,1H); 6.63e6.60 (m,1H); 3.51 (s, 2H); 2.55 (s, 3H);
2.21 (s, 3H); 0.91 (s, 9H); 0.14 (s, 6H). Anal. Calcd for C26H32FNO2SSi: C,
66.49; H, 6.87; N, 2.98. Found: C, 66.68; H, 7.10; N, 3.16.
seeded at 5 ꢂ 103/well and treated with compounds at 100
mM for
24 h. Subsequently, the Caspase 3/7 assay substrate was added and
the fluorescence was measured by spectrofluorimeter at excitation
and emission wavelengths of 485 and 530 nm, respectively. Values
were expressed as ratio between fluorescent signals generated in
cells treated with compounds and those produced in untreated
cells (vehicle alone).
4.1.4. General procedureforthepreparation ofacid hydroxyamides 1e3
Trifluoroacetic acid (4.4 mL, 57 mmol) was added dropwise to a stir-
redand cooled solution(0 ꢁC)of4e6(1mmol)indryCH2Cl2.Thesolution
was stirred under these reaction conditions for 5 h and the solvent was
removed in vacuo to give the hydroxyacetamide derivatives (1e3).
4.2.4. DNA fragmentation assay
Cells were treated for 24 or 48 h with tested compounds at
4.1.4.1. (Z)-2-(6-Fluoro-2-methyl-3-(4-(methylsulfinyl)benzylidene)-
3H-inden-1-yl)-N (1). The title compound was prepared from 4
following the general procedure. The crude product was purified by
titration with Et2O to give 1 as yellow solid, mp: 208e209 ꢁC; yield
200 mM, harvested by trypsinization and combined with detached
cells. Apoptosis was then assessed by the Cell Death Detection
ELISA kit (Roche, Mannheim, Germany) based on the recognition of
released nucleosomes after DNA internucleosomal fragmentation
by a mouse monoclonal antibody directed against DNA and
histones. The assay allowed the specific determination of mono-
and oligo-nucleosomes in the cytoplasmic (apoptosis) or in the
supernatant fraction (necrosis) of cell lysates.
70%; 1H NMR (CDCl3,
d ppm): 7.76e7.64 (m, 4H); 7.21e7.15 (m, 2H);
6.87e6.81 (m, 1H); 6.65e6.57 (m, 1H); 3.58 (s, 2H); 2.82 (s, 3H);
2.22 (s, 3H). Anal. Calcd for C20H18FNO3S: C, 64.68; H, 4.88; N, 3.77.
Found: C, 64.87; H, 5.12; N, 3.96.
4.1.4.2. (Z)-2-(6-Fluoro-2-methyl-3-(4-(methylsulfonyl)benzylidene)-
3H-inden-1-yl)-N-hydroxyacetamide (2). The title compound was
prepared from 5 following the general procedure. The crude product
was purified by titration with Et2O to give 2 as yellow solid; mp:
4.2.5. RT-PCR assay
RNA from cells was extracted by using the RNeasy Mini kit and
reverse-transcribed by the QuantiTect Reverse Transcription kit.
PCR was performed by the Hot StartTaq Master Mix kit. Primers
used were: 50-GCCTGACTCCTTCAAGATCG-30 (F) and 50-AGGGA-
CAGGTCTTGGTGTTG-30 (R) for COX-1; 50-TGAAACCCACTCCAAA-
CACA-30 (F) and 50-AACTGATGCGTGAAGTGCTG-30 (R) for COX-2;
50-TCTGACGGCAACTTCAACTG-30 (F) and 50-TTGAGGAGTCTCACC-
CAACC-30 (R) for Bax; 50-TCCATGTCTTTGGACAACCA-30 (F) and
50-CTCCACCAGTGTTCCCATCT-30 (R) for Bcl-2; 50-GTGAAGGTCG-
GAGTCAACG-30 (F) and 50-GGTGAAGACGGCCAGTGGACTC-30 (R) for
GAPDH and the expected amplification products were 446, 385,
188, 203 and 300 bp long, respectively. Relative densitometry of
bands was measured using NIH ImageJ gel analysis.
210e215 ꢁC; yield 70%; 1H NMR (CDCl3,
d ppm): 7.97e7.93 (m, 2H);
7.72e7.68 (m, 2H); 7.19e7.10 (m, 2H); 6.94e6.83 (m, 1H); 3.60 (s,
2H); 3.11 (s, 3H); 2.22 (s, 3H). Anal. Calcd for C20H18FNO4S: C, 62.00;
H, 4.68; N, 3.62. Found: C, 61.83; H, 4.81; N, 3.75.
4.1.4.3. (Z)-2-(6-Fluoro-2-methyl-3-(4-(methylthio)benzylidene)-3H-
inden-1-yl)-N-hydroxyacetamide (3). The title compound was
prepared from 6 following the general procedure. The crude
product was purified by titration with Et2O to give 3 as yellow solid,
mp: 199e201 ꢁC; yield 70%; 1H NMR (CDCl3,
d ppm): 7.46e7.30 (m,
4H); 7.18 (s, 2H); 6.86e6.81 (m,1H); 6.65e6.57 (m,1H); 3.54 (s, 2H);
2.55 (s, 3H); 2.19 (s, 3H). Anal. Calcd for C20H18FNO2S: C, 67.59; H,
5.10; N, 3.94. Found: C, 67.73; H, 5.23; N, 4.12.
4.2.6. Anti-angiogenic activity
HUVEC were sub-cultured into twenty-four-well plates at
a density of 104 cells/well over night and kept in serum-free
medium for 24 h. Cells were then incubated in growth medium in
4.2. Pharmacology
the presence or absence of 0.1 mM test compounds for 96 h expo-
4.2.1. Cell culture conditions
The human cancer cell lines MIA PaCa-2 (pancreas) and COLO320
(colon) (American Type Culture Collection, Manassas, VA), were
sure. At the end of the experiments, cells were harvested and
counted by haemocytometer and changes in cell growth were
expressed as a percentage relative to day 0.
cultured in DMEM medium supplemented with
10% fetal bovine serum, 2.5% horse serum, 50 IU/ml penicillin and
50
g/ml streptomycin (SigmaeAldrich, Milano, Italy) at 37 ꢁC in an
atmosphere of 5% CO2. Human umbilical vein endothelial cells
(HUVEC) were cultured in an optimized media containing the
angiogenic factors, bFGF and VEGF (Lonza, Walkersville, MD, USA).
L-glutamine (2 mM),
4.2.7. Data analysis and statistical procedures
m
Data were expressed as mean ꢀ standard error of the mean
(SEM) of three measurements. Data analysis was performed with
GraphPad Prism software. The 50% inhibitory concentration of cell
growth (IC50) was calculated with a non-linear least squares curve