1224 Protein & Peptide Letters, 2010, Vol. 17, No. 10
ꢀꢁgowska et al.
nitude compared to that of native SFTI-1. One year later Jing
et al. [12] designed and synthesized upon the basis of SFTI-1
potent and metabolically stable ethtylene-bridged matriptase
inhibitor. This fully redox stable peptide displayed compara-
ble inhibitory activity, however the synthesis of such peptide
is robust and difficult from synthetic point of view. In 1997
Pawlak et al. [13] described side-chain-to-side-chain cycliza-
tion via a carbonyl bridge. It was achieved by linking amino
side chains of dibasic amino acids to form ureido moiety. By
applying this approach they obtained cyclic analogues of
enkephalin [14], dermorphin [15-17] and deltorphin [18].
Extensive studies on carbonyl bridge of the mentioned
opioid peptides showed that disulfide bridge can be success-
fully replaced by a carbonyl one. Availability of dibasic ami-
no acids and straightforward method of carbonyl bridge for-
mation enabled a synthesis of cyclic peptides with different
size of the ring. It should be noted that such modification has
not been explored yet in the case of proteinase inhibitors.
(1:1, v/v) with addition of 1% Triton X-100, whereas the
chain elongation was achieved with standard DIC/HOBt
chemistry; 3 equiv. of protected amino acid derivatives were
used. After completing the syntheses, the allyl ester from the
C-terminal ꢀ-carboxyl group (peptide was attached to the
resin through ꢁ-carboxyl group) of analogue 1 was removed
using Pd(Ph3)P)4, according to the procedure described in the
literature [19]. This was followed by the deprotection of N-
terminal amino group. The head-to-tail cyclization of 1 was
performed by the method with PyBop/DIPEA (molar ratio
1:2) in DMF [20]. The progress of the reaction was moni-
tored by MS analysis using MALDI-TOF method. The cycli-
zation was completed within 6 hours. Dde and ivDde protect-
ing groups were removed from ꢂ-, ꢃ-, ꢄ- and ꢁ-amino func-
tions of Orn, Lys Dab, and Dap, respectively, peptidyl-resins
with 2% hydrazine solution in DMF [21]. In the next step,
the carbonyl bridge was introduced. This was performed in
DMF at room temperature by addition in few portions of
bis(4-nitrophenyl) carbonate (1 equiv.) [15] to the peptidyl-
resin. Progress of the reaction was monitored by the ninhy-
drin and chloranil tests and analyzed by MS. The reaction
was carried out until free amino groups were no longer de-
tected. The correctness of the product was confirmed by the
mass spectrometry (MS) method. The cyclization reaction of
the synthesized peptides was completed within nine hours.
Finally, the peptides were cleaved from the resin simultane-
ously with the side chain protecting groups in a one-step
Taking all into the consideration, we synthesized the se-
ries of monocyclic SFTI-1 analogues in which a ring forma-
tion was achieved via a ureido group incorporating the side-
chain amino groups see Fig. (2) of L-2,3-diaminopropionic
acid (Dap), L-2,4-diaminobutyric acid (Dab), Orn and Lys
placed in positions originally occupied by Cys residues. The
objective of the introduction of the set of dibasic amino acid
residues starting with Dap (one CH2 group) up to Lys (four
CH2 groups) in positions 3 and 11 was the determination of
the optimal size of the SFTI-1 cycle/ring for the inhibitor –
trypsin interaction. In addition, unlike disulfide bridge, N-
(ureidoethyl)amide moieties are redox stable. This is a very
important factor in case of introducing such peptides into the
biological system.
procedure, using
a
TFA/phenol/triisopropylsilane/water
(88:5:2:5; v/v/v/v) mixture [22].The crude peptides were
purified by HPLC on a Beckman Gold System (Beckman,
USA) using an RP Kromasil-100, C8, 5 μm column (8 ꢅ 250
mm) (Knauer, Germany). The solvent system was 0.1% TFA
(A) and 80% acetonitrile in A (B). Isocratic condition or
linear gradient was applied, flow rate 3.0 mL/min, monitored
at 226 nm. The purity of the synthesized peptides was
checked on an RP Kromasil 100, C8, 5 μm column (4.6 ꢅ
250 mm) (Knauer, Germany). The solvent system was 0.1%
TFA (A) and 80% acetonitrile in A (B). Linear gradients
from 10 to 90% B in 30 min; flow rate 1 mL/min, monitored
at 226 nm, were applied. The mass spectrometry analysis of
all peptides synthesized was carried out on a MALDI MS (a
Biflex III MALDI-TOF spectrometer, Bruker Daltonics,
Germany) using ꢀ-cyano-4-hydroksycy-namic acid matrix.
Figure 2. Chemical structure of SFTI-1 analogues with carbonyl
bridge, (x,y = 1 for Dap, 2 for Dab, 3 for Orn and 4 for Lys).
MATERIALS AND METHODS
Peptide Synthesis
Determination of Association Equilibrium Constants
Bovine ꢀ-trypsin was standardized by burst kinetics with
4-nitrophenyl-4’-guanidinobenzoate (NPGB) at an enzyme
concentration of 10-6 M [23]. The concentration of SFTI-1
analogues was determined by titration of their stock solu-
tions with standardised bovine ꢁ-trypsin with Bz-DL-Arg-
pNA (BAPNA) as substrate. The association constants were
measured by the method developed in the laboratory of M.
Laskowski, Jr., [24, 25]. The interaction between bovine ꢀ-
trypsin and the inhibitor was determined in 0.1 M Tris-HCl,
pH 8.3 buffer containing 20 mM CaCl2 and 0.005% Triton
X-100 at room temperature. Increasing amounts of the in-
hibitor, varying from 0 to 2E0 (E0 - the total enzyme concen-
tration), were added to the constant amount of the enzyme.
After a 3-hour incubation, the residual enzyme activity was
measured using Bz-Val-Gly-Arg-pNA as a chromogenic
substrate on a Cary 3E spectrophotometer (Varian, Austra-
All peptides were synthesized by the solid-phase method
using Fmoc chemistry. The following amino acid derivatives
were used: Fmoc-Gly, Fmoc-Arg(Pbf), Fmoc-Thr(tBu),
Fmoc-Ser(tBu), Fmoc-Ile, Fmoc-Pro, Fmoc-Phe, Fmoc-Asp
(OtBu), Fmoc-Asp-OAll, Fmoc-Lys(Boc), Fmoc-Lys(ivD-
de), Fmoc-Orn(Dde), Fmoc-Dab(ivDde), and Fmoc-Dap
(ivDde). The C-terminal amino acid residue Fmoc-Asp
(OtBu) or Fmoc-Asp-OAll (in the case of analogue 1) was
attached to 2-chlorotrityl chloride resin (substitution of Cl
1.46 meq/g) (Calbiochem-Novabiochem AG, Switzerland) in
the presence of an equimolar amount of DIPEA (in relation
to the amino acid derivative) in anhydrous condition in DCM
solutions. Peptide chains were elongated in the consecutive
cycles of deprotection and coupling. Deprotection was per-
formed with 20% piperidine in the mixture of DMF/NMP