Z.-P. Xiao et al. / Bioorg. Med. Chem. 23 (2015) 4508–4513
4511
determined by measuring ammonia production using the indophe-
nol method as described by Weatherburn.25
244 (M+). Anal. Calcd for C13H12N2O3: C, 63.93; H, 4.95; N, 11.47.
Found: C, 63.98; H, 4.95; N, 11.45.
4.6. Protocol of docking study
4.7.1.3. N-(4-Chlorobenzyl)-4-nitroaniline (6).
Yellow pow-
der, yield 48%, mp 197–199 °C, 1H NMR (400 MHz, CDCl3
+
The automated docking studies were carried out using
AutoDock version 4.2. First, AutoGrid component of the program
pre-calculates a three-dimensional grid of interaction energies
based on the macromolecular target using the AMBER force field.
The cubic grid box of 56 Å size (x, y, z) with a spacing of 0.375 Å
and grid maps were created representing the catalytic active target
site region where the native ligand was embedded. Then auto-
mated docking studies were carried out to evaluate the binding
free energy of the inhibitor within the macromolecules. The GALS
search algorithm (genetic algorithm with local search) was chosen
to search for the best conformers. The parameters were set using
the software ADT (AutoDockTools package, version 1.5.4) on PC
which is associated with AutoDock 4.2. Default settings were used
with an initial population of 50 randomly placed individuals, a
maximum number of 2.5 ꢁ 106 energy evaluations, and a maxi-
mum number of 2.7 ꢁ 104 generations. A mutation rate of 0.02
and a crossover rate of 0.8 were chosen. Results differing by less
than 0.5 Å in positional root-mean-square deviation (RMSD) were
clustered together and the results of the most favorable free energy
of binding were selected as the resultant complex structures.
DMSO-d6): 4.32 (s, 2H); 6.52 (d, J = 8.6 Hz, 2H); 7.17 (bs, 1H);
7.24 (s, 4H); 7.91 (d, J = 8.7 Hz, 2H); EIMS m/z 262 (M+). Anal.
Calcd for C13H11ClN2O2: C, 59.44; H, 4.22; Cl, 13.50; N, 10.66.
Found: C, 59.48; H, 4.22; Cl, 13.49; N, 10.65.
4.7.1.4. 4-Nitro-N-(4-nitrobenzyl)aniline (7).
Light yellow
powder, yield 41%, mp 187–188 °C, 1H NMR (300 MHz, DMSO-
d6): 4.19 (d, J = 5.6 Hz, 2H); 6.52 (t, J = 5.5 Hz, 1H); 7.48 (d,
J = 8.4 Hz, 2H); 6.57 (d, J = 8.8 Hz, 2H); 7.94 (d, J = 8.9 Hz, 2H);
8.27 (d, J = 8.4 Hz, 2H); EIMS m/z 273 (M+). Anal. Calcd for
C13H11N3O4: C, 57.14; H, 4.06; N, 15.38. Found: C, 57.19; H, 4.05;
N, 15.39.
4.7.1.5.
(8).
4-((3-Nitrophenylamino)methyl)benzene-1,2-diol
Orange powder, yield 77%, mp 126–128 °C, 1H NMR
(300 MHz, DMSO-d6): 4.15 (s, 2H); 6.61 (d, J = 8.0 Hz, 1H); 6.68
(d, J = 8.0 Hz, 1H); 6.73 (s, 1H); 6.84 (bs, 1H); 6.97 (d, J = 7.0 Hz,
1H); 7.25–7.33 (m, 3H); 8.72 (bs, 1H); 8.80 (bs, 1H); EIMS m/z
260 (M+). Anal. Calcd for C13H12N2O4: C, 60.00; H, 4.65; N, 10.76.
Found: C, 59.94; H, 4.67; N, 10.77.
4.7. Chemistry
4.7.1.6. N-(3,4-Dimethoxybenzyl)-3-nitroaniline (9).
Yellow
powder, yield 37%, mp 146–148 °C, 1H NMR (300 MHz, DMSO-d6):
3.72 (s, 3H); 3.74 (s, 3H); 4.26 (d, J = 5.9 Hz, 2H); 6.86–6.92 (m,
3H); 6.96–7.02 (m, 2H); 7.29 (t, J = 7.9 Hz, 1H); 7.32 (d, J = 1.8 Hz,
1H); 7.37 (d, J = 2.2 Hz, 1H); EIMS m/z 288 (M+). Anal. Calcd for
All chemicals (reagent grade) used were purchased from Aldrich
(U.S.A.) and Sinopharm Chemical Reagent Co., Ltd (China). Melting
points (uncorrected) were determined on a XT4 MP apparatus
(Taike Corp., Beijing, China). EI mass spectra were obtained on a
Waters GCT mass spectrometer, and 1H NMR spectra were
recorded on a Bruker AV-300 or 400 spectrometer at 25 °C with
TMS and solvent signals allotted as internal standards. Chemical
shifts were reported in ppm (d). Elemental analyses were per-
formed on a CHN-O-Rapid instrument and were within 0.4% of
the theoretical values.
C15H16N2O4: C, 62.49; H, 5.59; N, 9.72. Found: C, 62.41; H, 5.60;
N, 9.73.
4.7.1.7.
(10).
N-(Benzo[d][1,3]dioxol-5-ylmethyl)-3-nitroaniline
Yellow powder, yield 63%, mp 146–148 °C, 1H NMR
(300 MHz, DMSO-d6): 4.25 (d, J = 5.9 Hz, 2H); 6.12 (s, 2H); 6.84–
6.93 (m, 3H); 6.98 (s, 1H); 7.00 (d, J = 8.1 Hz, 1H); 7.29 (t,
J = 7.9 Hz, 1H); 7.32 (s, 1H); 7.37 (s, 1H); EIMS m/z 272 (M+).
Anal. Calcd for C14H12N2O4: C, 61.76; H, 4.44; N, 10.29. Found: C,
61.69; H, 4.44; N, 10.30.
4.7.1. General procedure for the preparation of compounds 4-24
A solution of an aniline 3 (10 mmol) and an appropriate substi-
tuted benzaldehyde 2 (10 mmol) in methanol (10 mL) was refluxed
for 3–5 h. After cooling and addition of NaBH4 (15 mmol), the mix-
ture was further stirred at room temperature for 3–6 h and concen-
trated under reduced pressure. The residue was dissolved in AcOEt
(80 mL), and 40 mL of water was added. The aqueous layer was
separated and extracted with AcOEt (2 ꢁ 40 mL). The organic layer
and extracts were combined, dried over MgSO4, and concentrated
under reduced pressure, and the residue was purified by flash col-
umn chromatography (silica gel, EtOAc/petroleum ether) to give
desired compounds 4–24.
4.7.1.8. N,N-Dimethyl-4-((3-nitrophenylamino)methyl)aniline
(11).
Light yellow powder, yield 51%, mp 104–106 °C, 1H
NMR (300 MHz, DMSO-d6): 2.85 (s, 6H); 4.19 (d, J = 5.7 Hz, 2H);
6.69 (d, J = 7.5 Hz, 2H); 6.83 (t, J = 5.5 Hz, 1H); 6.98 (d, J = 7.0 Hz,
1H); 7.18 (d, J = 7.7 Hz, 2H); 7.25–7.35 (m, 3H); EIMS m/z 271
(M+). Anal. Calcd for C15H17N3O2: C, 66.40; H, 6.32; N, 15.49.
Found: C, 66.46; H, 6.33; N, 15.47.
4.7.1.9. N-(4-Chlorobenzyl)-3-nitroaniline (12).
Light yel-
low powder, yield 83%, mp 108–110 °C, 1H NMR (400 MHz,
CDCl3): 4.30 (d, J = 5.3 Hz, 2H); 4.36 (bs, 1H); 6.79 (dd, J = 7.9 Hz,
J = 1.9 Hz, 1H); 7.18–7.27 (m, 5H); 7.34 (t, J = 1.9 Hz, 1H); 7.47
(dd, J = 7.9 Hz, J = 1.4 Hz, 1H); EIMS m/z 262 (M+). Anal. Calcd for
4.7.1.1.
(4).
4-((4-Nitrophenylamino)methyl)benzene-1,2-diol
Yellow powder, yield 85%, mp 182–183 °C, 1H NMR
(300 MHz, DMSO-d6): 4.21 (d, J = 5.3 Hz, 2H); 6.59 (dd, J = 8.0 Hz,
J = 1.8 Hz, 1H); 6.65 (d, J = 9.7 Hz, 2H); 6.68 (d, J = 8.0 Hz, 1H);
6.71 (d, J = 1.8 Hz, 1H); 7.69 (t, J = 5.5 Hz, 1H); 7.97 (d, J = 9.3 Hz,
2H); 8.78 (s, 1H); 8.84 (s, 1H); EIMS m/z 260 (M+). Anal. Calcd for
C13H11ClN2O2: C, 59.44; H, 4.22; Cl, 13.50; N, 10.66. Found: C,
59.49; H, 4.22; Cl, 13.48; N, 10.65.
C
13H12N2O4: C, 60.00; H, 4.65; N, 10.76. Found: C, 59.92; H, 4.65;
4.7.1.10. 3-Nitro-N-(4-nitrobenzyl)aniline (13).
Orange
N, 10.78
powder, yield 69%, mp 129–131 °C, 1H NMR (400 MHz, CDCl3):
4.55 (d, J = 4.6 Hz, 2H); 4.6 (bs, 1H); 6.86 (d, J = 7.9 Hz, 1H); 7.29
(t, J = 8.0 Hz, 1H); 7.40 (s, 1H); 7.54 (d, J = 8.3 Hz, 2H); 7.58 (d,
J = 8.0 Hz, 1H); 8.23 (d, J = 8.4 Hz, 2H); EIMS m/z 273 (M+). Anal.
Calcd for C13H11N3O4: C, 57.14; H, 4.06; N, 15.38. Found: C,
57.08; H, 4.07; N, 15.40.
4.7.1.2. 4-((4-Nitrophenylamino)methyl)phenol (5).
Light
yellow powder, yield 53%, mp 141–143 °C, 1H NMR (300 MHz,
DMSO-d6): 4.37 (d, J = 5.2 Hz, 2H); 6.47 (t, J = 5.2 Hz, 1H); 7.06 (s,
4H); 7.42 (d, J = 8.8 Hz, 2H); 8.21 (d, J = 8.9 Hz, 2H); EIMS m/z