Brief Articles
Journal of Medicinal Chemistry, 2009, Vol. 52, No. 9 3115
deacetylase inhibitors: molecular mechanisms of action. Oncogene
2007, 26, 5541.
(2) Hodawadekar, S. C.; Marmorstein, R. Chemistry of acetyl transfer by
histone modifying enzymes: structure, mechanism and implications
for effector design. Oncogene 2007, 26, 5528.
5.8 (s, 1H), 5.80 (d, 1H, J ) 15.6 Hz), 6.16 (d, 1H, J ) 2.1 Hz),
6.45 (dd, 1H, J ) 2.1, 8.9 Hz), 7.05 (d, 1H, J ) 15.6 Hz), 7.30 (d,
1H, J ) 8.9 Hz). 13C NMR (75 MHz; CD3OD) δ ppm: 14.0, 25.0,
41.0, 90.8, 93.5, 108.5, 110.3, 119.1, 126.9, 136.9, 138.6, 146.1,
160.4, 166.6, 175.2, 200.7. IR neat: 3200, 2900, 1600, 1532, 1352,
1119. HRMS ESI: (M + Na)+ C17H20N2O4Na calcd 339.13208,
found 339.1320; (M + H)+ C17H21N2O4 calcd 317.15013, found
317.1510.
(3) Dokmanovic, M.; Clarke, C.; Marks, P. A. Histone deacetylase
inhibitors: overview and perspectives. Mol. Cancer Res. 2007, 5, 981.
(4) Duvic, M.; Talpur, R.; Ni, X.; Zhang, C.; Hazarika, P.; Kelly, C.;
Chiao, J. H.; Reilly, J. F.; Ricker, J. L.; Richon, V. M.; Frankel, S. R.
Phase 2 trial of oral vorinostat (suberoylanilide hydroxamic acid,
SAHA) for refractory cutaneous T-cell lymphoma (CTCL). Blood
2007, 109, 31.
(5) (a) Finnin, M. S.; Donigian, J. R.; Cohen, A.; Richon, V. M.; Rifkind,
R. A.; Marks, P. A.; Breslow, R.; Pavletich, N. P. Structures of a
histone deacetylase homologue bound to the TSA and SAHA
inhibitors. Nature (London) 1999, 401, 188. (b) Somoza, J. R.; Skene,
R. J.; Katz, B. A.; Mol, C.; Ho, J. D.; Jennings, A. J.; Luong, C.;
Arvai, A.; Buggy, J. J.; Chi, E.; Tang, J.; Sang, B. C.; Verner, E.;
Wynands, R.; Leahy, E. M.; Dougan, D. R.; Snell, G.; Navre, M.;
Knuth, M. W.; Swanson, R. V.; McRee, D. E.; Tari, L. W. Structural
snapshots of human HDAC8 provide insights into the class I histone
deacetylases. Structure 2004, 12, 1325.
(6) Vannini, A.; Volpari, C.; Gallinari, P.; Jones, P.; Mattu, M.; Carf´ı,
A.; De Francesco, R.; Steinku¨hler, C.; Di Marco, S. Substrate binding
to histone deacetylases as shown by the crystal structure of the
HDAC8-substrate complex. EMBO Rep. 2007, 8, 879.
(7) Nielsen, T. K.; Hildmann, C.; Dickmanns, A.; Schwienhorst, A.; Ficner,
R. Crystal structure of a bacterial class 2 histone deacetylase
homologue. J. Mol. Biol. 2005, 354, 107.
(8) Khan, N.; Jeffers, M.; Kumar, S.; Hackett, C.; Boldog, F.; Khramtsov,
N.; Qian, X.; Mills, E.; Berghs, S. C.; Carey, N.; Finn, P. W.; Collins,
L. S.; Tumber, A.; Ritchie, J. W.; Jensen, P. B.; Lichenstein, H. S.;
Sehested, M. Determination of the class and isoform selectivity of
small-molecule histone deacetylase inhibitors. Biochem. J. 2008, 409,
581.
(9) KrennHrubec, K.; Marshall, B. L.; Hedglin, M.; Verdin, E.; Ulrich,
S. M. Design and Evaluation of “Linkerness” Hydroxamic Acids as
Selective HDAC8 Inhibitors. Bioorg. Med. Chem. Lett. 2007, 17, 2874.
(10) (a) Kozikowski, A. P.; Tapadar, S.; Luchini, D. N.; Kim, K. H.;
Billadeau, D. D. Use of the Nitrile Oxide Cycloaddition (NOC)
Reaction for Molecular Probe Generation: A New Class of Enzyme
Selective Histone Deacetylase Inhibitors (HDACIs) Showing Pico-
molar Activity at HDAC6. J. Med. Chem. 2008, 51, 4370–4373. (b)
Estiu, G.; Greenberg, E.; Harrison, C. B.; Kwiatkowski, N. P.;
Mazitschek, R.; Bradner, J. E.; Wiest, O. Structural Origin of
Selectivity in Class II-Selective Histone Deacetylase Inhibitors. J. Med.
Chem. 2008, 51, 2898–2906.
(11) (a) Weerasinghe, S. V. W.; Estiu, G.; Wiest, O.; Pflum, M. K. H.
Residues in the 11 Å Channel of Histone Deacetylase 1 Promote
Catalytic Activity: Implications for Designing Isoform-Selective
Histone Deacetylase Inhibitors. J. Med. Chem. 2008, 51, 5542–5551.
(b) Witter, D.; Belvedere, S.; Chen, L.; Secrist, J.; Mosley, R.; Miller,
T. A. Benzo[b]thiophene-based histone deacetylase inhibitors. Bioorg.
Med. Chem. Lett. 2007, 17, 4562–4567.
(12) (a) Charrier, C.; Bertrand, P.; Gesson, J.-P.; Roche, J. Synthesis of
rigid trichostatin A analogs as HDAC inhibitors. Bioorg. Med. Chem.
Lett. 2006, 16, 5339. (b) Charrier, C.; Roche, J.; Gesson, J.-P.;
Bertrand, P. Antiproliferative activities of a library of hybrids between
indanones and HDAC inhibitor SAHA and MS-275 analogues. Bioorg.
Med. Chem. Lett. 2007, 17, 6142.
5-(2-Methyl-3-oxo-2,3-dihydro-benzofuran-2-yl)-4-methyl-
penta-2,4-dienoic Acid Benzamide (7c). To a solution of acid 19a
(134 mg, 0.52 mmol) in dry THF (5 mL) was added 1,2-
diaminobenzene (340 mg, 3.12 mmol) and EDC (145 mg, 0.68
mmol). After stirring overnight, the solution was concentrated under
vacuum. EtOAc was added (50 mL), and the resulting organic layer
was washed with H2O (30 mL) and then twice with aq 1 N NaOH
(20 mL). The organic layer was dried (MgSO4) and solvents
removed under vacuum. The resulting solid was purified (flash
chromatography EtOAc:PE 50:50) to give 7c as a pale-yellow
powder (127 mg, 70%, mp 174-175 °C). Rf: 0.8 (EtOAc:PE 50:
1
50). H NMR (300 MHz; CDCl3) δ ppm: 1.60 (s, 3H), 1.90 (s,
3H), 3.95 (s, 2H), 5.90 (s, 1H), 6.10 (d, 1H, J ) 15.3 Hz), 6.75
(m, 1H), 7.1 (m, 4H), 7.25 (d, 1H, J ) 15.3 Hz), 7.6 (m, 3H). 13
C
NMR (75 MHz; CDCl3) δ ppm: 13.7, 23.9, 88.8, 113.5, 118.1,
119.3, 119.4, 120.8, 122.1, 124.3, 124.9, 125.1, 127.1, 134.8, 137.3,
138.4, 140.7, 145.9, 164.3, 170.9, 201.8. IR neat: 3200, 2900, 1715,
1610, 1460, 1300, 1186. HRMS ESI: (M + Na)+ calcd 371.13716,
found 371.1378.
5-(6-Dimethylamino-2-methyl-3-oxo-2,3-dihydro-benzofuran-
2-yl)-4-methyl-penta-2,4-dienoic Acid Benzamide (7d). Prepared
as above from acid 19b (157 mg, 0.52 mmol), THF (5 mL), 1,2-
diaminobenzene (340 mg, 3.12 mmol), and EDC (145 mg, 0.68
mmol). Purification (flash chromatography EtOAc:PE 60:40) gave
7d as a pale-yellow powder (134 mg, 66%, mp: 136-140 °C). Rf:
1
0.8 (EtOAc:PE 60:40). H NMR (300 MHz; CDCl3) δ ppm: 1.6
(s, 3H), 1.9 (s, 3H), 3.1 (s, 6H), 3,6 (s, 2H), 5.9 (s, 1H), 6.0 (d,
1H, J) 15.2 Hz), 6.16 (s, 1H), 6.42 (dd, 1H, J ) 2.1, 8.9 Hz), 6.7
(m, 2H), 7.0 (t, 1H, J ) 7.5 Hz), 7.2 (m, 2H), 7.60 (d, 1H, J ) 8.8
Hz), 7.9 (s, 1H). 13C NMR (75 MHz; CDCl3) δ ppm: 13.6, 24.3,
40.5, 89.4, 92.4, 107.7, 108.1, 116.7, 118.1, 119.3, 120.5, 124.5,
125.2, 125.9, 127.0, 136.1, 136.7, 140.8, 146.3, 157.9, 164.6, 173.2,
198.3. IR neat: 3249, 2900, 1667, 1600, 1531, 1439, 1116. HRMS
ESI: (M + Na)+ C23H25N3O3Na calcd 414.17936, found 414.1777.
Acknowledgment. We thank MENRT, CNRS, and La Ligue
Contre le Cancer, Comite´ de Charente-Maritime for financial
support. G.E. and O.W. thank the Walther Cancer Institute at
the University of Notre Dame for continued financial support.
Supporting Information Available: Experimental details for
the synthesis of compounds 9, 10b, 13a,b, 16a,b, 18a,b, and 19a,b,
the analytical and spectral data for all compounds, the biological
evaluations of compounds 7a-d, and the molecular modeling
methods. This material is available free of charge via the Internet
(13) Ohira, T.; Gemmill, R.; Ferguson, K.; Kusy, S.; Roche, J.; Brambilla,
E.; Zeng, C.; Baron, A.; Bemis, L.; Erickson, P.; Wilder, E.; Rustgi,
A.; Kitajewski, J.; Gabrielson, E.; Bremnes, R.; Franklin, W.; Drabkin,
H. WNT7a induces E-Cadherin in lung cancer cells. Proc. Natl. Acad.
Sci. U.S.A. 2003, 100, 10429.
(14) Potiron, V.; Roche, J.; Drabkin, H. Semaphorins and their receptors
in lung cancer. Cancer Lett. 2009, 273, 1.
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