The Journal of Organic Chemistry
Article
273, 231, 189, 171, 147, 117 (100), 89, 73; HRMS (ESI) calcd for
C17H37O4Si2 (M+ + H) m/z 361.2225, found 361.2226.
i-PrOH saturated with ammonia (4 mL). The solution was sealed
in a reaction vessel and stirred at 100 °C overnight. The solution was
allowed to cool to rt, and the solvent was removed in vacuo.
Purification by flash chromatography on silica gel (CH2Cl2/MeOH
95:5) provided a mixture of bis-TBDMS protected adenine containing
trans-3,4-Bis(tert-butyldimethylsilyloxymethyl)-2-methyle-
neoxetane (11). The general methylenation procedure was applied
to trans-3,4-bis(tert-butyldimethylsilyloxymethyl)oxetan-2-one (10)
(0.20 g, 0.55 mmol). Purification by flash chromatography on silica
gel (petroleum ether/EtOAc/Et3N 97:2:1) afforded 11 as a pale
yellow oil (0.162 g, 81%): IR (KBr) 2955, 2930, 2896, 2858, 1694,
1472, 1256, 1141, 1059, 838, 778 cm−1; 1H NMR (300 MHz, CDCl3)
δ 4.63 (ddd, J = 4.2, 4.2, 4.2 Hz, 1H), 4.12 (m, 1H), 3.83 (m, 4H),
3.76 (m, 1H), 3.40 (m, 1H), 0.91 (s, 9H), 0.90 (s, 9H), 0.09 (s, 6H),
0.07 (s, 6H); 13C NMR (75 MHz, CDCl3) δ 164.2, 83.2, 79.6, 64.8,
63.0, 45.5, 26.1, 26.1, 18.6, 18.5, −5.2, −5.2; MS (EI) m/z 301 (M+ −
C4H9), 271, 231, 211, 169, 147, 117, 89, 73 (100); HRMS (ESI) calcd
for C18H39O3Si2 (M+ + H) m/z 359.2432, found 359.2417.
1
nucleoside as a clear oil (7.6 mg, 93%): H NMR (300 MHz, CDCl3)
(peaks assigned for the β-product) δ 8.28 (s, 1H), 8.12 (s, 1H), 6.09
(s, 2H), 5.21 (dd, J = 47.2, 10.3 Hz, 1H), 4.94 (dd, J = 47.2, 10.4 Hz,
1H), 4.88 (m, 1H), 4.23 (dd, J = 10.9, 5.9 Hz, 1H), 4.05 (dd, J = 11.0,
5.0 Hz, 1H), 3.88 (dd, J = 12.4, 3.1 Hz, 1H), 3.66 (dd, J = 12.3, 3.0 Hz,
1H), 3.61 (m, 1H), 0.92 (s, 9H), 0.73 (s, 9H), 0.12 (s, 3H), 0.10 (s,
3H), −0.05 (s, 6H); (peaks assigned for the α-product) δ 8.27 (s, 1H),
8.22 (s, 1H), 6.14 (s, 2H), 5.23 (dd, J = 46.9, 10.1 Hz, 1H), 4.96 (m,
1H), 4.90 (dd, J = 46.8, 10.3 Hz, 1H), 3.97 (dd, J = 11.9, 3.2 Hz, 1H),
3.88 (m, 1H), 3.61 (m, 2H), 3.36 (ddd, J = 5.4, 5.4, 5.4 Hz, 1H), 0.95
(s, 9H), 0.69 (s, 9H), 0.14 (s, 3H), 0.13 (s, 3H), −0.21 (s, 3H), −0.32
(s, 3H); 13C NMR (75 MHz, CDCl3) (peaks assigned for β-product) δ
3α,4β-Bis(tert-butyldimethylsilyloxymethyl)-2-(6-chloro-9H-
purin-9-yl)-2-fluoromethyloxetane (12) and 3α,4β-Bis(tert-
butyldimethylsilyloxymethyl)-2-(6-chloro-7H-purin-7-yl)-2-flu-
oromethyloxetane (13). The general procedure for fluorine-mediated
nucleobase incorporation was applied to trans-3,4-bis(tert-butyldime-
thylsilyloxymethyl)-2-methyleneoxetane (11) (0.15 g, 0.42 mmol). A 1H
NMR of the crude product indicated the formation of four psico-
nucleosides in a ratio of 1:1:0.6:0.3. Purification by flash chromatography
on silica gel (petroleum ether/EtOAc 70:30) afforded a mixture of four
diastereomers as a clear wax (0.17 g, 76%). Further purification by flash
chromatography on silica gel (petroleum ether/EtOAc 70:30) provided
an 12 as inseparable 63:37 mixture, favoring the desired β-product as a
155.8, 153.0, 148.8, 138.9, 120.3, 92.4 (d, JCF = 19 Hz), 82.8 (d, JCF
=
178 Hz), 81.5, 64.3, 59.3 (d, JCF = 2.3 Hz), 46.5, 26.0, 25.9, 18.4, 18.4,
−5.3, −5.3, −5.4, −5.4; (peaks assigned for the α-product) δ 155.9,
152.7, 149.1, 139.3, 121.1, 94.3 (d, JCF = 19 Hz), 82.7 (d, JCF = 180
Hz), 80.6, 64.7, 59.3, 42.0, 26.1, 25.9, 18.7, 18.2, −5.1, −5.2, −5.8,
−5.8; MS (EI) m/z β-product 496 (M+ − CH3), 454, 338, 196, 136,
117, 89, 73 (100), 56; α-product 496 (M+ − CH3), 454, 338, 281, 196,
136, 117, 89, 73 (100), 56. This mixture of bis-TBDMS-protected
nucleosides (35 mg, 0.068 mmol) was dissolved in THF (2 mL), and a
solution of TBAF in THF (1 M, 0.17 mL, 0.17 mmol) was added
dropwise. The resulting solution was stirred at rt for 1 h. The solvent was
removed in vacuo, and the residue was purified by flash chromatography
on silica gel (EtOAc/i-PrOH/acetone/H2O 80:8:8:4) to afford 2 as a
clear wax (12 mg, 96%): IR (KBr) 3386 (br), 2925, 2852, 1655, 1603,
1385 cm−1; 1H NMR (500 MHz, CD3OD) δ 8.31 (s, 1H, H8), 8.20 (s,
1H, H2), 5.25 (dd, J = 46.9, 10.6 Hz, 1H), 5.05 (dd, J = 46.6, 10.6 Hz,
1H), 4.83 (m, 1H), 4.12 (dd, J = 11.6, 6.8 Hz, 1H), 4.05 (dd, J = 11.6,
6.2 Hz, 1H), 3.82 (dd, J = 13.3, 1.8 Hz, 1H), 3.63 (m, 2H); 13C NMR
(100 MHz, CD3OD) δ 157.5 (C6), 153.8 (C2), 149.3 (C4), 140.3 (C8),
120.8 (C5), 93.6 (d, JCF = 19 Hz), 83.8 (d, JCF = 177 Hz), 83.3, 64.1,
59.1 (d, JCF = 3 Hz), 47.8; HRMS (ESI) calcd for C11H15FN5O3 (M+ +
H) m/z 284.1153, found 284.1154.
1
clear oil (93 mg, 42%; β-product, 27%): H NMR (400 MHz, CDCl3)
(peaks assigned for the β-product) δ 8.69 (s, 1H), 8.44 (s, 1H), 5.21
(dd, J = 47.3, 10.3 Hz, 1H), 5.01 (dd, J = 47.3, 10.4 Hz, 1H), 4.93 (m,
1H), 4.23 (dd, J = 11.2, 5.2 Hz, 1H), 4.01 (dd, J = 11.0, 5.1 Hz, 1H),
3.90 (dd, J = 12.2, 1.8 Hz, 1H), 3.63 (m, 2H), 0.93 (s, 9H), 0.67 (s, 9H),
0.12 (s, 3H), 0.11 (s, 3H), −0.08 (s, 3H), −0.09 (s, 3H); (peaks
assigned for the α-product) δ 8.67 (s, 1H), 8.52 (s, 1H), 5.23 (dd, J =
46.7, 10.0 Hz, 1H), 5.03 (dd, J = 46.7, 9.8 Hz, 1H), 5.00 (m, 1H), 3.99
(dd, J = 11.8, 3.4 Hz, 1H), 3.86 (dd, J = 12.1, 3.7 Hz, 1H), 3.63 (m, 1H),
3.54 (dd, J = 11.5, 4.6 Hz, 1H), 3.39 (m, 1H), 0.95 (s, 9H), 0.63 (s,
9H), 0.14 (s, 3H), 0.13 (s, 3H), −0.25 (s, 3H), −0.39 (s, 3H); 13C
NMR (100 MHz, CDCl3) (peaks assigned for the β-product) δ 151.9,
151.2, 150.3, 143.9, 132.5, 93.0 (d, JCF = 18 Hz), 82.6 (d, JCF = 179 Hz),
81.4, 63.8, 59.0, 46.0, 26.0, 25.8, 18.4, −5.3, −5.3, −5.4, −5.5; (peaks
assigned for the α-product) δ 151.6, 151.4, 150.9, 144.3, 133.2, 94.8 (d,
JCF = 20 Hz), 82.4 (d, JCF = 181 Hz), 80.0, 64.2, 59.0, 42.1, 26.1, 25.8,
18.7, 18.1, −5.1, −5.2, −5.8, −5.9; MS (EI) m/z β-product 515 (M+ −
CH3), 473, 357, 187, 147, 117, 89, 73 (100), 56; α-product 515 (M+ −
CH3), 473, 357, 299, 187, 147, 117, 89, 73 (100), 56. Compound 13 was
isolated as an inseparable 77:23 mixture, favoring the β-product as a clear
oil (80 mg, 34%; β-product, 27%): 1H NMR (300 MHz, CDCl3) (peaks
assigned for the β-product) δ 8.88 (s, 1H), 8.70 (s, 1H), 5.02 (dd, J =
46.7, 10.5 Hz, 1H), 4.92 (dd, J = 46.5, 10.5 Hz, 1H), 4.84 (m, 1H), 4.23
(dd, J = 10.7, 5.6 Hz, 1H), 4.11 (dd, J = 10.9, 5.8 Hz, 1H), 3.88 (dd, J =
12.5, 2.4 Hz, 1H), 3.69 (m, 1H), 3.63 (dd, J = 12.6, 2.7 Hz, 1H), 0.93 (s,
9H), 0.63 (s, 9H), 0.14 (s, 3H), 0.12 (s, 3H), −0.16 (s, 3H), −0.18 (s,
3H); (peaks assigned for the α-product) δ 8.90 (s, 1H), 8.80 (s, 1H),
5.27 (dd, J = 46.4, 10.4 Hz, 1H), 4.96 (m, 1H), 4.88 (dd, J = 46.4, 10.4
Hz, 1H), 4.02 (dd, J = 12.0, 3.5 Hz, 1H), 3.91 (dd, J = 12.0, 4.1 Hz, 1H),
3.79 (m, 2H), 3.38 (ddd, J = 5.0, 5.0, 5.0 Hz, 1H), 0.95 (s, 9H), 0.66 (s,
9H), 0.14 (s, 6H), −0.21 (s, 3H), −0.39 (s, 3H); 13C NMR (75 MHz,
CDCl3) (peaks assigned for β-product) δ 163.7, 152.6, 148.5, 142.2,
121.8, 94.1 (d, JCF = 19.6 Hz), 83.5 (d, JCF = 181.1 Hz), 81.6, 63.8, 59.6
(d, JCF = 2.9 Hz), 46.6, 26.0, 25.7, 18.3, −5.4, −5.4, −5.5, −5.6; (peaks
assigned for the α-product) δ 164.2, 152.5, 148.1, 141.5, 121.8, 95.0 (d, JCF
= 19.7 Hz), 85.2 (d, JCF = 181.8 Hz), 80.5, 64.4, 59.8, 42.1, 26.1, 25.8, 18.6,
18.1, −5.2, −5.2, −5.8, −5.9; MS (EI) m/z β-product 473
(M+ − C4H9), 443, 379, 357, 341, 269, 229, 187, 117, 89, 73 (100); α-
product 473 (M+ − C4H9), 443, 357, 299, 245, 187, 117, 89, 73 (100).
2β-(6-Amino-9H-purin-9-yl)-2α-fluoromethyl-trans-3α,4β-
bis(hydroxymethyl)oxetane (2). The 63:37 mixture of 3α,4β-
bis(tert-butyldimethylsilyloxy)methyl)-2-(6-chloro-9H-purin-9-yl)-2-
fluoromethyloxetane (12) (8.5 mg, 0.016 mmol) was dissolved in
2β-(6-Amino-7H-purin-7-yl)-2α-fluoromethyl-trans-3α,4α-
bis(hydroxymethyl)oxetane (14). The 3:1 mixture of 3α,4β-
bis(tert-butyldimethylsilyloxy)methyl)-2-(6-chloro-7H-purin-7-yl)-2-
fluoromethyloxetane (13) (70 mg, 0.098 mmol) was dissolved in
MeOH saturated with ammonia (10 mL). The solution was sealed in a
tube and stirred at 80 °C overnight. The solution was allowed to cool
to rt, and the solvent was removed in vacuo. Purification by flash
chromatography on silica gel (CH2Cl2/MeOH 96:4) provided bis-
TBDMS-protected analogue of 14 as a yellow solid (35 mg, 70%): mp
169−171 °C; IR (KBr) 3422, 2930, 2857, 1637, 1474, 1255, 1140,
1
1086, 838, 779 cm−1; H NMR (300 MHz, CDCl3) δ 8.49 (s, 1H),
8.18 (s, 1H), 6.06 (br, 2H), 4.79 (m, 1H), 4.75 (dd, J = 46.9, 10.2 Hz,
1H), 4.58 (dd, J = 46.0, 10.3 Hz, 1H), 4.27 (m, 1H), 3.93 (m, 2H),
3.84 (dd, J = 12.5, 2.8 Hz, 1H), 3.69 (dd, J = 12.4, 2.9 Hz, 1H), 0.94
(s, 9H), 0.67 (s, 9H), 0.15 (s, 3H), 0.14 (s, 3H), −0.06 (s, 3H), −0.20
(s, 3H); 13C NMR (75 MHz, CDCl3) δ 161.6, 153.9, 151.1, 142.5,
111.0, 91.9 (d, JCF = 22.1 Hz), 83.0 (d, JCF = 183.3 Hz), 81.4, 63.7,
59.4 (d, JCF = 4.7 Hz), 46.7, 26.1, 25.6, 18.4, 18.2, −5.4, −5.5, −5.6;
MS (EI) m/z 379 (M+ − H − OTBDMS), 357, 341, 229, 211, 187,
154, 117, 89, 73 (100); HRMS (ESI) calcd for C23H43FN5O3Si2
(M+ + H) m/z 512.2883, found 512.2873. This bis-TBDMS-protected
nucleoside (23 mg, 0.045 mmol) was dissolved in THF (2 mL), and a
solution of TBAF in THF (1 M, 0.11 mL, 0.11 mmol) was added
dropwise. The resulting solution was stirred at rt for 1 h. The solvent
was removed in vacuo, and the residue was purified by flash
chromatography on silica gel (EtOAc/EtOH/acetone/H2O
6:1:1:0.5) to afford 14 as a clear wax (12 mg, 94%): IR (KBr)
3422, 2925, 2855, 1637, 1597, 1560, 1475, 1398, 1037 cm−1; 1H NMR
(500 MHz, CD3OD) δ 8.44 (s, 1H, H8), 8.28 (s, 1H, H2), 4.95 (dd,
J = 46.7, 10.6 Hz, 1H), 4.84 (m, 1H), 4.76 (dd, J = 46.1, 10.6 Hz, 1H),
4.18 (dd, J = 9.9, 9.9 Hz, 1H), 3.99 (dd, J = 11.4, 5.4 Hz, 1H), 3.84 (m,
9969
dx.doi.org/10.1021/jo201565h|J. Org. Chem. 2011, 76, 9962−9974