Solid-Phase Synthesis of 1,3,5-Triazine Analogues
FULL PAPER
93% yield). 1H NMR: (300 MHz, CDCl3, 258C): d=9.42 (s, br, 1H;
NH), 8.25 (s, 1H; N=CH), 7.50 (s, 1H; N=CH), 7.49–6.95 (m, 5H; ArH),
6.95 (s, 1H; N=CH), 4.35 ppm (s, 1H; ArCH2); 13C NMR (75 MHz,
CDCl3, 258C): d=175.7, 155.3, 137.4, 135.8, 129.7, 128.8, 128.6, 127.8,
117.1, 35.2 ppm; HRMS (EI): m/z calcd for C12H12N4OS+: 260.0732 [M]+;
found: 260.0733.
127.43, 50.9, 35.5 ppm; HRMS (ESI): m/z calcd for C17H15N3NaOS+:
332.0828 [M+Na]+; found: 332.0839.
Synthesis of 3-benzyl-6-(benzylthio)-4,4-dimethyl-3,4-dihydro-1,3,5-tri-
ACHUTNGRENaNUG zin-2AHCTUNGTRENN(GUN 1H)-one (18): Compound 13a (2.39 g, 8 mmol), 2,2-dimethoxypro-
pane (9.84 mL, 80 mmol), and para-toluenesulfonic acid monohydrate
(0.304 g, 1.6 mmol) were dissolved in DMF (50 mL), and the reaction
mixture was stirred at 808C for 3 h. Purification by column chromatogra-
phy with acetone/hexane (1:3) as the eluent afforded 18 as a white solid
(2.64 g, 97% yield). 1H NMR: (300 MHz, CDCl3, 258C): d=9.51 (s, 1H;
NH), 7.24–7.09 (m, 10H; ArH), 4.53 (s, 2H; ArCH2), 4.07 (s, 2H;
ArCH2), 1.28 ppm (s, 6H; CH3); 13C NMR (75 MHz, CDCl3, 258C): d=
153.3, 149.8, 138.9, 137.2, 129.0, 128.2, 128.2, 127.3, 127.1, 126.8, 76.2,
45.3, 34.3, 28.0 ppm; HRMS (ESI): m/z calcd for C19H21N3NaOS+:
362.1298 [M+Na]+; found: 362.1300.
Synthesis of benzyl N’-benzylcarbamoylcarbamimidothioate (13a): Com-
pound 12 (2.861 g, 11 mmol), benzylamine (2.04 mL, 16.5 mmol), and
triethylamine (3.02 mL, 22 mmol) were dissolved in DMF (50 mL) under
N2 and stirred at 808C for 30 min. Thereafter, the reaction mixture was
concentrated and purified by column chromatography with acetone/
hexane (1:2) as the eluent to afford 13a as a clear syrup (2.9601 g,
9.9 mmol, 90% yield). 1H NMR: (300 MHz, CDCl3, 258C): d=7.23–7.14
(m, 10H; ArH), 4.31 (d, J=6.3 Hz, 2H; ArCH2NH) 4.13 ppm (s, 2H;
ArCH2); 13C NMR (75 MHz, CDCl3, 258C; mixture of tautomers): d=
169.3, 167.8, 163.2, 162.3, 138.6, 136.7, 128.5, 128.2, 128.1, 127.0, 126.9,
126.7, 43.6, 34.3 ppm; HRMS (ESI): m/z calcd for C16H18N3OS+:
300.1165 [M]+; found: 300.1172.
Synthesis of 1-benzyl-6,6-dimethyl-1,3,5-triazinane-2,4-dione (19a): Com-
pound 18 (0.339 g, 1 mmol) was stirred in CH2Cl2 (5 mL) before the addi-
tion of DMDO (25 mL, 0.08m). The reaction mixture was stirred at room
temperature for 15 min. Removal of the solvent in vacuo afforded 19a as
a white solid in quantitative yield (0.231 g, 0.99 mmol).
Synthesis of (E)-benzyl N’-allylcarbamoylcarbamimidothioate (13b): Al-
lylamine hydrochloride (0.21 g, 2.25 mmol) was dissolved in DMF
(10 mL) and Amberlyst A21 (1.5 g) was added to the reaction mixture,
which was shaken at room temperature for 30 min and then transferred
to a 25 mL round-bottom flask. Triethylamine (0.309 mL, 2.25 mmol) and
12 (0.146 g, 0.56 mmol) were added and the reaction mixture was stirred
under N2 at 408C for 1.5 h. Thereafter, the reaction mixture was
quenched with brine (50 mL) and extracted with diethyl ether (3ꢁ
20 mL). The combined organic layers were dried over MgSO4, filtered,
and concentrated in vacuo to yield a clear syrup, which was purified by
column chromatography (EtOAc/hexane=1:3) to give 13b as a pungent
clear syrup (94 mg, 67% yield). 1H NMR: (300 MHz, CDCl3, 258C): d=
7.27–7.16 (m, 5H; ArH), 5.77 (m, 1H; NHCH2CHCH2), 5.44 (s, 1H;
NH), 5.12 (dd, J=17.2, 1.4 Hz, 1H; NHCH2CHCH2), 5.03 (dd, J=10.2,
1.4 Hz, 1H; NHCH2CHCH2), 4.16 (s, 2H; ArCH2), 3.76 ppm (t, J=
5.5 Hz, 1H; NHCH2CHCH2); 13C NMR (75 MHz, CDCl3, 258C): d=
168.2, 162.7, 134.7, 128.7, 128.5, 127.3, 115.6, 42.3, 34.6 ppm; HRMS (EI):
m/z calcd for C12H15N3OS+: 249.0936 [M]+; found: 249.0936.
General procedure for the solution-phase synthesis of 22a: Compoun-
d 22a was synthesized according to a procedure reported by Jensen and
co-workers.[17b]
Synthesis of tert-butyl 3-{3-[amino(benzylthio)methylene]ureido}propyl-
carbamate (23): Anhydrous DMF (100 mL), tert-butyl 3-aminopropylcar-
bamate 22a (3.831 g, 22 mmol), and triethylamine (3.08 mL, 22.0 mmol)
were added to 12 (2.861 g, 11.0 mmol) under N2, and the reaction mixture
was stirred at 808C for 30 min. Thereafter, the reaction mixture was dis-
solved in brine (250 mL) and extracted with diethyl ether (3ꢁ100 mL).
The combined organic extracts were dried over MgSO4 and concentrated
in vacuo to yield a clear syrup, which was purified by column chromatog-
raphy with acetone/hexane (1:2) as the eluent to obtain 23 as a clear
syrup (3.18 g, 79% yield).
Synthesis of tert-butyl 3-[4-(benzylthio)-2-oxo-6-thioxo-5,6-dihydro-1,3,5-
triazin-1ACTHNUTRGNEU(GN 2H)-yl]propylcarbamate (24): N,N’-Thiocarbonyldiimidazole
(2.138 g, 12.0 mmol) and DIEA (2.09 mL, 12.0 mmol) were added to 23
(2.93 g, 8.0 mmol) in anhydrous DMF solvent under N2, and the reaction
mixture was stirred at 608C for 36 h. The resultant yellow–red solution
was adsorbed directly onto a small amount of silica gel, concentrated in
vacuo to yield a slurry, and purified by flash column chromatography
with CH2Cl2/EtOAc (7:1) as the eluent to yield a yellowish solid as 24
(2.27 g, 70% yield). Various attempts to purify 24 failed to yield a suffi-
ciently pure product for NMR characterization. HRMS (ESI): m/z calcd
for C18H23N4O3S2ꢀ: 407.1217 [MꢀH]ꢀ; found: 407.1208. Subsequent opti-
mization reactions involved a one-pot S-methylation reaction of 24 to
give 25 in 58% overall yield.
Synthesis of 3-benzyl-6-(benzylthio)-1,3,5-triazine-2,4ACTHNUTRGNEUGN(1H,3H)-dione
(14a): Compound 13a (0.300 g, 1 mmol), DIEA ( 0.348 mL, 2 mmol), and
CDI ( 0.324 g, 2 mmol) were dissolved in DMF (10 mL), and the reaction
mixture was stirred at 1108C for 3 h. The reaction mixture turned gradu-
ally from colorless to pale red. After 3 h, the reaction mixture was con-
centrated in vacuo to yield a white residue, which was purified by column
chromatography with acetone/CH2Cl2 (1:1) as the eluent to yield 14a as a
white solid (0.253 g, 79% yield). 1H NMR: (300 MHz, (CD3)2CO, 258C):
d=7.47–7.24 (m, 10H; ArH), 4.99 (s, 2H; ArCH2), 4.46 ppm (s, 2H;
ArCH2); 13C NMR (75 MHz, (CD3)2CO, 258C): d=167.8, 151.4, 151.3,
137.0, 136.3, 129.1, 128.4, 128.2, 128.1, 127.4, 127.2, 43.9, 33.9 ppm;
HRMS (ESI): m/z calcd for C17H14N3O2Sꢀ: 324.0812 [MꢀH]ꢀ; found:
324. 0807.
Synthesis of tert-butyl 3-[4-(benzylthio)-6-(methylthio)-2-oxo-1,3,5-tri-
A
E
(25):
Methyl
iodide
(1.87 mL,
30.0 mmol), DIEA (5.22 mL, 30.0 mmol), and 24 (2.44 g, 6 mmol) were
added to anhydrous THF (60 mL). The reaction mixture turned from
dark red to light red upon the addition of methyl iodide and was stirred
for 30 min at room temperature. Upon completion of the reaction, the re-
action mixture appeared as a red solution with a yellowish precipitate.
The reaction mixture was concentrated to dryness and purified by
column chromatography with acetone/hexane (1:1) as the eluent to
obtain 25 (2.00 g, 79% yield).
Synthesis of 3-benzyl-6-(butylamino)-1,3,5-triazine-2,4ACTHNUTRGNEUGN(1H,3H)-dione
(16a): DMDO (0.08m, 10 mL) was added to a solution of 14a (0.130 g,
0.4 mmol) in acetone (10 mL), and the reaction mixture was stirred at
room temperature for 5 min to yield 15a. Afterward, the reaction mix-
ture was concentrated in vacuo to yield a white solid, which was redis-
solved in DMF (5 mL). Butylamine (0.197 mL, 2 mmol) was added to the
reaction mixture, which was stirred at 808C for a further 3 h. Thereafter,
the reaction mixture was concentrated in vacuo, adsorbed onto silica gel,
and purified by column chromatography with acetone/hexane (5:2) as the
eluent to yield 16a as a white solid (76 mg, 70% yield).
Synthesis
of
2-(benzylthio)-6,7,8,9-tetrahydropyrimidoACHTUNGTRENNUNG[1,2-a]-
AHCTUNGTERG[NNUN 1,3,5]triazin-4-one (26): The deprotection procedure was adopted from a
procedure reported by Merrifield and co-workers.[22] TMSCl (13.73 mL,
108 mmol) and phenol (29.86 g, 317 mmol) were added to a solution of
25 (2.12 g, 5 mmol) in anhydrous CH2Cl2 (97 mL) under N2, and the reac-
tion mixture was stirred at room temperature for 1 h. Thereafter, the re-
sultant mixture, which appeared as a clear syrup, was adsorbed onto
silica gel, concentrated in vacuo to dryness, loaded onto a silica column,
and purified by column chromatography with EtOAc/hexane (1:1) as the
eluent to elute out the TMSCl/phenol mixture before switching to 2-
propanol/acetone (1:1) with 1% TEA as the eluent to obtain product 26
as a yellowish solid (0.959 g, 70% yield).
Synthesis of 1-benzyl-4-(benzylthio)-1,3,5-triazin-2ACTHNUTRGNEU(GN 1H)-one (17): Com-
pound 13a (2.392 g, 8 mmol), trimethylorthoformate (8.75 mL, 80 mmol),
and para-toluenesulfonic acid monohydrate (0.3044 g, 1.6 mmol) were
dissolved in DMF (50 mL) and stirred at 1108C for 4 h. Purification by
column chromatography with acetone/hexane (1:2) as the eluent afforded
17 as a white solid (1.75 g, 71% yield). 1H NMR: (300 MHz, CDCl3,
258C): d=8.01 (s, 1H; =CH), 7.36–7.27 (m, 10H; ArH), 4.97 (s, 2H;
ArCH2), 4.35 ppm (s, 2H; ArCH2); 13C NMR (75 MHz, CDCl3, 258C):
d=182.9, 156.4, 151.8, 135.8, 133.8, 129.1, 129.0, 128.7, 128.5, 128.3,
Chem. Eur. J. 2012, 18, 1476 – 1486
ꢀ 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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