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C. Uslan, B. Sßebnem Sesalan / Inorganica Chimica Acta 394 (2013) 353–362
2.7. Determination of binding 2Q, 3Q and 4Q to DNA using gel
8.05–8.07 (m, 8H, Hb); 9.33–9.35 (m, 8H, Ha). Anal. Calc. for C44-
electrophoresis
H40N10O2Si: C, 69.10; H, 5.54; N, 17.39. Found: C, 68.73; H, 5.24;
N, 17.01%.
The binding of compounds 2Q–4Q to DNA was further studied
by gel electrophoresis. R refers to the ratio of [MPc]/[DNA].
2.7 lM DNA, 1 lM 2Q, 3Q and 4Q solutions were prepared in dis-
tilled water and used in ratio given in Table 1. Staining solution
was prepared in Tris/borate/EDTA (TBE). The products were run
at 120 V for 20 min 1% agarose gel, stained with SYBR and analyzed
photographically under UV light.
Data for compound 3: The crude product was subjected to alu-
minum oxide column chromatography and was purified by using
tetrahydrofuran/chloroform (10/1) as eluent (Fig. 1). Yield: 35 mg
(52.2%). IR m
max/(cmꢁ1): 3011; 2907; 1613; 1520; 1426; 1332;
1288; 1164; 1121; 1077; 1050; 1004; 952; 909; 758. 1H NMR (ace-
tone-d6): ꢁ1.92–(ꢁ1.89) (t, 4H, Ha), 0.30–0.34 (t,4H,Hb); 1.71–1.83
(m,16H,Hd); 3.45–3.51 (m, 8H, Hc); 8.35–8.42 (m, 8H, Hb); 9.58–
9.62 (m, 8H, Ha). Mass (MALDI-TOFF): m/z calculated for C48H48-
2.8. Determination of singlet oxygen generation of 2Q, 3Q and 4Q
N10O2Si [M]+: 825.05; found 825.48. Anal. Calc. for C48H48N10O2Si:
C, 69.80; H, 6.07; N, 16.90. Found:C, 69.88; H, 5.86; N, 16.98%.
Data for compound 4: Firstly, the oily residue was reacted with
tetrahydrofuran (30 mL) at room temperature 1 h. Then the mixture
was centrifuged and the impurities were precipitated and the fil-
trate was evaporated. Secondly the residue was dissolved in acetone
(30 mL) and the impurities were precipitated. The filtrate was evap-
orated under vacuum until it was dry. The crude product was then
washed with cold hexan (2 ꢃ 30 mL) and then cold diethyl ether
Photo-irradiations were done using a 600–700 nm diode laser.
A dichroic filter (Schimadzu) was additionally placed in the light
path before the sample. A 3 mL portion of the respective substi-
tuted pc derivatives; 2Q, 3Q and 4Q, (concentration = 1 ꢃ 10ꢁ5 M)
containing the singlet oxygen quencher was irradiated in the Q
band region with the photo-irradiation set-up described in refer-
ences [34,35]. 9,10-Antracenediyl-bis(methylene)dimalonoic acid
(ADMA) was used as chemical quencher for singlet oxygen in aque-
ous media. To avoid chain reactions induced ADMA in the presence
of singlet oxygen [36], the concentration of ADMA was lowered to
ꢀ3 ꢃ 10ꢁ5 M. Solutions of sensitizer containing ADMA were pre-
pared in the dark and irradiated in the Q band region using the set-
up described above. ADMA degradation at 380 nm (in water) was
monitored. Spectra were recorded every 5 s.
(3 ꢃ 30 mL) (Fig. 1). Yield: 31 mg (35.6%). IR
m
max/(cmꢁ1): 3011;
2942; 2855; 2815; 2771; 1606; 1357; 1313; 1247; 1173; 1144;
1097; 1025; 986; 880; 836. 1H NMR (DMSO-d6): 1.17–1.33 (m, 8H,
Hb); 2.22–2.03 (m, 24H, Ha); 2.23–2.32 (br s, 12H, Hc); 2.33–2.40
(br s, 4H, Hd); 6.91–6.98 (m,4H,He); 8.44–8.67 (m, 8H, Hb); 9.54–
9.77 (m, 8H, Ha). Mass (MALDI-TOFF): m/z calculated for C62H68N14-
O2Si [Mꢁ2]+: 1067.38; found 1067.48. Anal. Calc. for C62H68N14O2Si:
C, 69.60; H, 6.38; N, 18.30. Found: C, 69.63; H, 6.41; N, 18.29%.
2.9. Determination of photocleavage of plasmid DNA using gel
electrophoresis
2.10.2. The general route for the synthesis of quaternized bis[(1-methyl
pyrrolidin-2-yl)methoxy] [phthalocyaninato] silicon (2Q), bis[(2-
azepan-1-yl)ethoxy] [phthalocyaninato] silicon (3Q) and bis(2,4,6-tris
(N,N-dimethylamminomethyl) phenoxy) [phthalocyaninato] silicon
(4Q)
The experiments were performed in 0.5 mL plastic eppendorf
microcentrifuge tubes. Each tube contained 10
lL (0.2 lg) of
supercoiled DNA (pBR322) and 0.87 M 2Q, 3Q and 4Q solutions
l
were prepared in distilled water. Tubes were illuminated from
top and in air at room temperature with 600–700 nm diode laser
which was placed 5 cm away from the tested tubes. Irradiation
time changed from 1 to 5 s. without changing the concentrations
of the reactants in each tube. After irradiation, conversion of super-
coiled DNA (form I) to nicked circular DNA (form II) was visualized
by 1% agarose gel electrophoresis and subsequent SYBR staining.
To test the involvement of singlet oxygen in photocleavage,
The quaternization of neutral compounds 2, 3 and 4 was pre-
pared according to the previous work [25]. Briefly, the compound
2, 3 or 4 (100 mg, 0.13 mmol) was dissolved in CH2Cl2 (30 cm3)
and stirred with excess CH3I (185 mg, 1.56 mmol) at room temper-
ature for 4 h. The mixture was then filtered and the precipitate was
washed with CH2Cl2 (5 ꢃ 30 mL) and dried in vacuo.
Data for the compound 2Q: Yield: 72 mg (52.9%). IR mmax
/
0.2 M (5
l
L) sodium azide was used.
(cmꢁ1): 2883; 1976; 1610; 1521; 1472; 1429; 1335; 1292; 1166;
1114; 1080; 957; 910; 791; 757. 1H NMR (DMSO-d6): ꢁ2.30-
(ꢁ2.22) (d, 4H, Ha); ꢁ1.81-(ꢁ1.77) (m, 2H, Hb); 1.65–1.87 (m,
8H, Hc); 2.25–2.33 (m, 4H, Hd); 3.06 (s, 12H, He); 8.28–8.34 (m,
2.10. Synthesis
2.10.1. The general route for the synthesis of bis[(1-methylpyrrolidin-
2-yl)methoxy] [phthalocyaninato] silicon (2), bis[2-azepan-1-yl)ethoxy]
[phthalocyaninato] silicon (3) and bis(2,4,6-tris(N,N-dimethylammino-
methyl) phenoxy) [phthalocyaninato] silicon (4)
8H, Hb); 9.45–9.51 (m, 8H, Ha) (Fig. 2). Mass (MALDI-TOFF): m/z
calculated for C46H46N10O2Si2+ [Mꢁ2I+1]+: 800.01; found 800.08.
Anal. Calc. for C46H46N10I2Si: C, 52.50; H, 4.38; N: 13.28. Found:
C, 52.48; H, 4.40; N, 13.30%.
A mixture of unsubstituted dichloro [phthalocyaninato] silicon
(1) (50 mg, 0.0817 mmol), NaH (0.735 mmol, 17.6 mg) and
(1-methylpyrrolidin-2-yl)methanol (28.21 mg, 0.245 mmol) for
compound 2, 2-(azepan-1-yl)ethanol (35.08 mg, 0.245 mmol) for
Data for the compound 3Q: Yield: 62 mg (46.3%). IR mmax/
(cmꢁ1): 2851; 2579; 1974; 1610; 1519; 1472; 1428; 1335; 1291;
1162; 1121; 1078; 998; 947; 909; 852; 790; 758; 717. 1H NMR
(DMSO-d6): ꢁ2.16-(ꢁ2.05) (t, 4H, Ha); 0.50–0.54 (t, 4H, Hb);
2.23–2.09 (m, 16H, Hd); 2.81–2.90 (m, 14H, Hc); 8.16–8.22 (m,
compound
3 or 2,4,6-tris(N,N-dimethylaminomethyl) phenol
(65 mg, 0.245 mmol) for compound 4 in dry toluene (25 mL) was
refluxed for 6 h under N2. After the reaction mixture was centri-
fuged, the filtrate was evaporated and the residue was washed
with n-hexane (3 ꢃ 30 mL) and dried in vacuo.
8H, Hb); 9.32–9.34 (m, 8H, Ha) (Fig. 2). Mass (MALDI-TOFF): m/z
calculated for C50H54N10O2Si2+ [Mꢁ2I+1]+: 856.11; found 856.07.
Anal. Calc. for C50H54N10I2Si: C, 54.18; H, 4.89; N, 12.60. Found: C,
54.15; H, 4.91; N, 12.63%.
Data for compound 2: The crude product was subjected to alu-
minum oxide column chromatography and was purified by using
dichloromethane/methanol (10/1) as eluent (Fig. 1). Yield: 38 mg
Data for the compound 4Q: Yield: 50 mg (27.9%). IR mmax/
(cmꢁ1): 3012; 2943; 1608; 1478; 1377; 1337; 1250, 1163; 1124;
1082; 1011; 973; 911; 870; 777. 1H NMR (D2O): 1.67–1.93 (br s,
8H, Hb); 2.59–2.92 (br s, 36H, Ha); 2.94–2.97 (s, 4H, Hc); 2.98–
3.22 (s, 18H, Hd); 7.73–8.00 (m, 4H, He); 8.02–8.69 (s, 8H, Hb);
(61.2%). IR
m
max/(cmꢁ1): 2773; 1611; 1519; 1471; 1426; 1333;
1287; 1163; 1119; 1076; 985; 908; 757. 1H NMR (CDCl3):
ꢁ2.29–(ꢁ1.85) (d, 4H, Ha); (ꢁ0.54)-(ꢁ0.77) (m, 2H, Hb); 1.26–
1.27 (m, 8H, Hc); 1.62–2.07 (t, 4H, Hd); 2.08–3.20 (s, 4H, He);
9.23–10.00 (m, 8H, Ha) (Fig. 2). Mass (MALDI-TOFF): m/z calcu-
lated for C65H77N14O2Si3+[Mꢁ6Iꢁ3CH3]+: 1114.48; found 1114.21.