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A.F. Eweas et al. / Bioorganic Chemistry 46 (2013) 17–25
3.3.2. 2-((8-Hydroxyquinolin-5-yl)sulfonyl)-1,3-diphenylpropane-1,3-
dione 4b
3.4.5. 5-((2,4-Dimethyl-3H-pyrido[3,4-b][1,4]diazepin-3-
yl)sulfonyl)quinolin-8-ol 7a
M.p. 203 °C, yield 65%; 1H NMR (400 MHz, DMSO-d6) d 6.43 (s,
1H); d 7.31–8.89 (m, 15H, aromatic protons); d 8.34(s, 1H, broad,
OH); HRMS (M)+ calcd for C24H17NO5S 431.0827. Found:
431.1037. Elemental analysis, calcd: C, 66.81; H, 3.97; N, 3.25; O,
18.54; S, 7.43. Found: C, 66.83; H, 3.95; N, 3.28; O, 18.51; S, 7.43.
M.p. 153 °C, yield 61%; 1H NMR (400 MHz, DMSO-d6) d 2.22 (s,
3H); d 2.25 (s, 3H); d 4.98 (s, 1H); d 7.31–8.89 (m, 8H, aromatic pro-
tons); 13C NMR (DMSO) d 24.8, 61.8, 110.8, 117.0, 118.6, 126.4,
127.1, 130.0, 135.9, 138.3, 142.2, 143.3, 143.8, 144.9, 155.0, 161.1,
161.4, 162.1; HRMS (M)+ calcd for C19H16N4O3S 380.0943. Found:
380.1034; Elemental analysis, calcd: C, 59.99; H, 4.24; N, 14.73;
O, 12.62; S, 8.43. Found: C, 60.01; H, 4.19; N, 14.74; O, 12.65; S, 8.41.
3.4. General procedure for the preparation of 1H-1,4-diazepine 5a-b,
3H-1,5-benzodiazepine 6a-b and 3H-pyrido[3,4-b][1,4]diazepine
derivatives
3.4.6. 5-((2,4-Diphenyl-3H-pyrido[3,4-b][1,4]diazepin-3-
yl)sulfonyl)quinolin-8-ol 7b
M.p. 217 °C, yield 58%; 1H NMR (400 MHz, DMSO-d6) d 6.14 (s,
1H); d 7.31–8.89 (m, 18H, aromatic protons); 13C NMR (DMSO) d
68.1, 110.0, 119.3, 120.1, 126.4, 127.8, 129.1, 129.5, 130.2, 133.9,
133.6, 134.2, 135.3, 136.2, 142.7, 143.3, 143.9, 145.6, 155.3,
161.1, 162.7; HRMS (M)+ calcd for C29H20N4O3S 504.1256. Found:
504.1202. Elemental analysis, calcd: C, 69.03; H, 4.00; N, 11.10;
O, 9.51; S, 6.36. Found: C, 69.01; H, 4.01; N, 11.11; O, 9.53; S, 6.34.
An equimolar ratio of b-diketones (10 mmol) 3a–d, and EDA/o-
PDA/3,4-DAP (10.0 mmol) in ethyl acetate (50 mL) in the presence
of silica sulfuric acid (10.0 mmol) was stirred 50 °C for 2 h. The
progress of reaction was monitored by TLC using 7:2:1
(benzene:ethanol:ammonia) upper layer as mobile phase. Upon
completion of reaction, the mixture was extracted with ethyl ace-
tate (2 ꢁ 25 mL) and the solvent was removed. The crude product
was washed with dry ether and recrystallized from petroleum
ether:ethyl acetate (1:1). The product was purified by column
chromatography over silica gel using pet ether:ethyl acetate
(40:60) as an eluent.
4. Molecular docking studies
All docking studies were performed using ‘Internal Coordinate
Mechanics (Molsoft ICM 3.5-0a).
3.4.1. 5-((2,4-Dimethyl-3H-benzo[b][1,4]diazepin-3-
yl)sulfonyl)quinolin-8-ol 5a
4.1. Preparation of small molecule
M.p. 143 °C, yield 78%; 1H NMR (400 MHz, DMSO-d6) d 2.13 (s,
6H); d 5.62 (s, 1H); d 7.31–8.89 (m, 9H, aromatic protons); d 8.34 (s,
1H, broad, OH); 13C NMR (DMSO) d 24.8, 61.8, 110.8, 117, 124.6,
126.4, 127.1, 130.3, 133.2, 138.3, 142.3, 143.3, 161.11, 162.1;
HRMS (M)+ calcd For C20H17N3O3S 379.0991. Found: 379.1045.
Elemental analysis, calcd: C, 63.31; H, 4.52; N, 11.07; O, 12.65; S,
8.45. Found: C, 63.28; H, 4.54; N, 11.08; O, 12.63; S, 8.47.
Novel 8-hydroxyquinoline-5-(1,4-diazepin-6-yl)sulfonyl deriv-
atives were synthesized and tested as anti-schistosomal agents
and compiled using ChemDraw. 3D structures were constructed
using Chem 3D ultra 12.0 software [Molecular Modeling and
Analysis; Cambridge Soft Corporation, USA (2010)], and then they
were energetically minimized by using MOPAC (semi-empirical
quantum mechanics), Jop Type with 100 iterations and minimum
RMS gradient of 0.01, and saved as MDL MolFile (ꢂ.mol).
3.4.2. 5-((2,4-Diphenyl-3H-benzo[b][1,4]diazepin-3-
yl)sulfonyl)quinolin-8-ol 5b
M.p. 187 °C, yield 64%; 1H NMR (400 MHz, DMSO-d6) d 6.43 (s,
1H); d 7.31–8.89 (m, 19H, aromatic protons); d 8.34 (s, 1H, broad,
OH); 13C NMR (DMSO) d 68.2, 110.0, 120.1, 124.6, 126.1, 127.8,
129.1, 129.5, 130.2, 130.9, 132.9, 133.2, 133.9, 135.5, 142.7,
143.3, 161.1, 162.6; HRMS (M)+ calcd for C30H21N3O3S 503.1304.
Found: 503.1296. Elemental analysis, calcd: C, 71.55; H, 4.20; N,
8.34; O, 9.53; S, 6.37. Found: C, 71.58; H, 4.18; N, 8.35; O, 9.50;
S, 6.39.
4.2. Generation of ligand and enzyme structures
The crystal structure of target enzyme thioredoxin-glutathione
reductase TGR (2V6O) is was retrieved from the Protein Data Bank
and cofactors were removed from the enzyme.
4.3. Docking using Molsoft ICM 3.4-8C program
3.4.3. 5-((5,7-Dimethyl-3,6-dihydro-2H-1,4-diazepin-6-
yl)sulfonyl)quinolin-8-ol 6a
1. Convert our PDB file into an ICM object: This conversion
involves addition of hydrogen bonds, assignment of atoms
types, and charges from the residue templates.
2. To perform ICM small molecule docking:
M.p. 132 °C, yield 81%; 1H NMR (400 MHz, DMSO-d6) d 2.13 (s,
6H); 3.61 (m, 4H, N–CH2–CH2–N); d 5.23 (s, 1H); d 7.31–8.89 (m,
5H, quinolone aromatic Protons); 13C NMR (DMSO) d 23.5, 47.7,
61.12, 110.8, 120.6, 126.5, 127.8, 130.3, 138.3, 141.6, 143.3,
160.5, 161.1; HRMS (M)+ calcd for C16H17N3O3S 331.0991. Found:
331.1094. Elemental analysis, calcd: C, 57.99; H, 5.17; N, 12.68;
O, 14.48; S, 9.68. Found: C, 58.02; H, 5.15; N, 12.69; O, 14.43; S,
9.71.
(a) Setup docking project:
(1)
(2)
(3)
(4)
Set project name
Setup the receptor
Review and adjust binding site
Make receptor maps
3.4.4. 5-((5,7-Diphenyl-3,6-dihydro-2H-1,4-diazepin-6-
yl)sulfonyl)quinolin-8-ol 6b
(b) Start docking simulation:
3. Display the result: ICM stochastic global optimization algorithm
attempts to find the global minimum of the energy function
that include five grid potentials describing interaction of the
flexible ligand with the receptor and internal conformational
energy of the ligand, during this process a stack of alternative
low energy conformations is saved (Table 1).
M.p. 171 °C, yield 74%; 1H NMR (400 MHz, DMSO-d6) d 3.68 (m,
4H, N–CH2–CH2–N); d 6.25 (s, 1H); d 7.31–8.89 (m, 15H, aromatic
protons); 13C NMR (DMSO) d 50.7, 67.4, 110.0, 121.9, 126.4, 128.5,
128.7, 129.1, 130.1, 131.3, 133.3, 135.4, 142.0, 143.3, 156.9, 161.1;
HRMS (M)+ calcd for C26H21N3O3S 455.1304. Found: 455.1267. Ele-
mental analysis, calcd: elemental analysis, calcd: C, 68.55; H, 4.65;
N, 9.22; O, 10.54; S, 7.04. Found: C, 68.52; H, 4.68; N, 9.19; O,
10.57; S, 7.04.
All inhibitors were compared according to the best binding free
energy (minimum) obtained among all the run.