10
S. Arya et al. / European Journal of Medicinal Chemistry 59 (2013) 7e14
4.2. General procedure for the synthesis of amidine derivatives [3]
4.2.4. N-(Pyridin-3-ylmethyl)-pyridine-2-carboxamidine (3d)
Yield 76%. semisolid. IR (KBr) nmax: 3444 & 3379 (NH), 1664 (e
4.2.1. Synthesis of N-(2-morpholin-4-yl-ethyl)-pyridin-2-
CaNe), 1526 & 1469 (Ar) cmꢁ1. 1H NMR (500 MHz; D2O)
d (ppm):
carboxamidine (3a)
4.483 (s, 2H, CH2), 7.247e7.273 (m, 1H, Ar), 7.434e7.475 (m, 1H, Ar),
7.656e7.679 (m, 1H, Ar), 7.820e7.838 (m, 2H, Ar), 8.265e8.277 (q,
1H, Ar), 8.336e8.352 (t, 1H, Ar), 8.433e8.462 (m, 1H, Ar). 13C NMR
Sodium metal (23 mg) was dissolved in absolute methanol
(20 ml) and was labeled as sodium methoxide solution in methanol.
2-Cyanopyridine (0.210 ml, 2 mmol) was dissolved in absolute
methanol (10 ml) and to it was added sodium methoxide solution
(0.5 ml) prepared above, the reaction contents were stirred at room
temperature for 2 h. 4-(2-Aminoethyl) morpholine (0.26 ml,
2 mmol) was added to the reaction mixture. The reaction contents
were heated under reflux for 8 h. Solvent was removed under
reduced pressure and to the residue left behind was added diethyl
ether, solid so obtained was filtered and washed with diethyl ether
to give crude product. This crude product was purified by crystal-
lization from ethyl acetate/methanol to give pure N-(2-morpholin-
4-yl-ethyl)-pyridine-2-carboxamidine (3a). Yield 370 mg (79%) mp
125e126 ꢃC. IR (KBr) nmax: 3428 (NH),1646 (eCaNe), cmꢁ1. 1H NMR
(125 MHz, DMSO-d6) d: 43.16 (CH2), 123.21 (py), 127.83 (py), 129.10
(py), 132.70 (py), 134.74 (py), 137.90 (py), 139.31 (py), 147.48 (py),
148.72 (py), 151.22 (py) and 164.62 (amidine). GCeMS m/z 212 (Mþ,
NH2
C N CH2
H2
C
+
C
+
30%), 196 (
, 100%), 134 (
, 7%),
N
N
N
N
+
92 (
CH2, 6%), Anal. Calcd. for C12H12N4 C 67.92; H 5.66; N
N
26.41%. Found C 67.97; H 5.70; N 26.45%.
4.2.5. N-(Pyridin-3-ylmethyl)-isonicotinamidine (3e)
Solvent of crystallization ethyl acetate/methanol. Yield 72%. mp
(500 MHz; DMSO-d6)
d
(ppm): 2.46 (bs, 4H, 2 ꢀ CH2), 2.574e2.602
278 ꢃC. IR (KBr) nmax: 3425 (NH), 1586 (eCaNe), 1547 & 1485
(t, 2H, J ¼ 7 Hz, eCH2e), 3.294e3.322 (t, 2H, J ¼ 7 Hz, eCH2e),
3.576e3.594 (t, 4H, J ¼ 4.5 Hz, eCH2e), 6.724 (bs, 2H, NH þ NH,
exch), 7.454e7.478 (q, 1H, J ¼ 5.5 Hz, 6.5 Hz, Ar), 7.853e7.884 (t, 1H,
J ¼ 7.5 Hz, Ar), 8.118e8.133 (d,1H, J ¼ 7.5 Hz, Ar), 8.563e8.572 (d,1H,
(Ar) cmꢁ1 1H NMR (500 MHz; D2O)
. d (ppm): 3.855 (s, 2H, CH2),
7.391e7.416 (q,1H, J ¼ 5 Hz, 7.5 Hz, Ar), 7.675e7.687 (q,1H, J ¼ 1.5 Hz,
4.5 Hz, Ar), 7.795e7.811 (d, 1H, J ¼ 8 Hz, Ar), 8.392e8.402 (q, 2H,
J ¼ 1.5 Hz, 3 Hz, py), 8.444e8.447 (d, 1H, J ¼ 1.5 Hz, py), 8.550e8.562
J ¼ 4.5 Hz, Ar). 13C NMR (125 MHz, DMSO-d6)
d: 36.21 (morp), 53.45
(q, 2H, J ¼ 1.5 Hz, 4.5 Hz, py). 13C NMR (125 MHz, DMSO-d6)
d: 43.14
(morp), 58.32 (morp), 66.30 (morp), 121.59 (py), 123.85 (py), 137.93
(CH2), 119.41 (py), 123.23 (py), 125.31 (py), 134.74 (py), 139.22 (py),
(py), 148.64 (py), 151.23 (py) and 163.87 (amidine). GCeMS m/z 235
147.46 (py),148.74 (py)150.70 (py)and 164.32(amidine). GCeMSm/z
.
+
.
+
(MHþ, 0.17%), 148 (
, 6%), 113 (
,
,
H2
+
O
N C CH2
H
O
N C CH2
212 (Mþ, 0.61%). 213 (MHþ, 18.15%), 107 (
, 100%), 105
NH
C
H
N
+
+
+
.
+
C NH
65%),105 (
,15%),100 (
,100%), 78 (
O
N CH2
+
+
N
N
CH
(
N
, 5.15%), 92 (
2,11.32%), 79 (
, 85.62%), 78
C NH
N
12%). Anal. Calcd for C12H18N4O C 61.53; H 7.69; N 23.93%. Found C
61.50; H 7.70; N 23.90%.
Similarly were synthesized other amidine derivatives 3bei.
Physical constants and spectral data of 3bei are summarized below.
N
+
(
, 70.35%) Anal. Calcd. for C12H12N4 C 67.92; H 5.66; N 26.41%.
N
4.2.2. N-(2-Morpholin-4-yl-ethyl)-isonicotinamidine (3b)
Found C 67.98; H 5.68; N 26.40%.
Solvent of crystallization ethyl acetate/methanol. Yield 80%. mp
122e125 ꢃC. IR (KBr) nmax: 3402 (NH), 1657 (eCaNe), 1551 & 1456
4.2.6. N-(Pyridin-3-ylmethyl)-pyrazine-2-carboxamidine (3f)
Solvent of crystallization ethyl acetate/methanol. Yield 81%. mp
135e136 ꢃC. IR (KBr) nmax: 3437 & 3334 (NH), 1655 (eCaNe), 1599,
(Ar) cmꢁ1 1H NMR (500 MHz; D2O)
. d (ppm): 2.359e2.388 (t, 4H,
J ¼ 7 Hz, 2 ꢀ CH2), 2.669e2.698 (t, 2H, J ¼ 7 Hz, CH2), 3.224e3.231
1574 & 1476 (Ar) cmꢁ1. 1H NMR (500 MHz; D2O)
d (ppm): 4.474 (s,
(d, 2H, J ¼ 3.5 Hz, eCH2e), 3.657 (bs, 4H, 2 ꢀ CH2), 7.652e7.664 (t,
2H, py), 8.617e8.628 (t, 2H, py). 13C NMR (125 MHz, DMSO-d6)
d:
2H, CH2), 7.348e7.374 (q, 1H, J ¼ 5 Hz, 10 Hz, Ar), 7.789e7.804 (d,
1H, J ¼ 7.5 Hz, Ar), 8.348e8.358 (t, 1H, Ar), 8.456e8.459 (d, 1H,
J ¼ 1.5 Hz, Ar), 8.605e8.636 (m, 2H, Ar), 9.031e9.033 (d, 1H,
43.66 (morp), 53.13 (morp), 58.77 (morp), 66.14 (morp), 121.18 (py),
143.42 (py),149.65 (py) and 164.67 (amidine). GCeMS m/z 234 (Mþ,
J ¼ 1.0 Hz, Ar). 13C NMR (125 MHz, DMSO-d6)
d: 43.21 (CH2), 123.34
+
0.65%), 100 (
, 100%), 78 (
, 12.59%). Anal. Calcd.
+
N
O
N CH2
(py), 135.22 (py), 136.82 (py), 142.54 (py), 143.04 (py), 145.36 (pyra),
147.03 (pyra), 147.49 (pyra), 148.95 (pyra) and 164.32 (amidine).
for C12H18N4O C 61.53; H 7.69; N 23.93%. Found C 61.55; H 7.67; N
23.95%.
NH
C
N
+
GCeMS m/z 213 (Mþ, 8%), 135 (
, 7%), 106
NH CH2
N
4.2.3. N-(2-Morpholin-4-yl-ethyl)-pyrazine-2-carboxamidine (3c)
Solvent of crystallization ethyl acetate/methanol. Yield 83%. mp
135e137 ꢃC. IR (KBr) nmax: 3432 & 3331 (NH), 1646 (eCaNe), 1595
.
+
N
N
+
+
N
(
, 11%), 105 (
NH
, 5%), 79 (
, 5%), 78
C
& 1469 (Ar) cmꢁ1. 1H NMR (500 MHz; D2O)
d (ppm): 2.559 (s, 4H,
C
N
N
N
N
2 ꢀ CH2), 2.683 (s, 2H, CH2), 3.401 (s, 2H, CH2), 3.689 (s, 4H,
2 ꢀ CH2), 8.601e8.630 (d, 2H, J ¼ 14.5 Hz, Ar), 8.998 (s, 1H, Ar). 13
C
+
(
, 25%). Anal. Calcd. for C11H11N5 C 61.97; H 5.16; N 32.86%.
NMR (125 MHz, DMSO-d6) d: 36.82 (morp), 54.05 (morp), 59.57
N
(morp), 66.65 (morp), 143.09 (pyra), 143.27 (pyra), 145.16 (pyra),
Found C 61.70; H 5.18; N 32.89%.
147.31 (pyra) and 164.22 (amidine). GCeMS m/z 236 (M þ 1, 0.5%),
.
+
4.2.7. N-(2-Piperazin-1-yl-ethyl)-pyridine-2-carboxamidine (3g)
Yield79%.Semisolid.IR(KBr)nmax:3391(NH),1647(eCaNe),1586
+
113 (
, 20%), 100 (
, 100%) Anal. Calcd.
O
N CH2
O
N C CH2
& 1464 (Ar) cmꢁ1. 1H NMR (500 MHz; D2O)
d (ppm): 2.461e2.475 (d,
H
for C11H17N5O C 56.17; H 7.23; N 29.78%. Found C 57.20; H 7.25; N
29.95%.
1H, J ¼ 7 Hz, one H of CH2), 2.535 (bs, 4H, 2 ꢀ CH2), 2.706e2.732 (t,1H,
J ¼ 6.5 Hz, one H of CH2), 2.812 (bs, 4H, 2 ꢀ CH2), 3.526e3.570 (q, 2H,