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decrease the aromatic ring count (#Ar) and could increase the
solubility while lowering the PPB.30 It would also lower the
lipophilicity31 of our chemical series and increase the fraction of
sp3-hydridized carbons (Fsp3), which could potentially improve
the solubility.32 A reduction in lipophilicity, as assessed by the
measured logP or calculated logP (clogP) values, can lead to
improvements in cellular permeability and aqueous solubility33,34
while also decreasing PPB35 and minimizing any potential second-
ary pharmacology associated with our molecules.36,37
Aryl-piperazines and aryl-piperidines are proven biaryl isoster-
es.38 With this consideration in mind, we initiated a campaign to
replace the terminal arene of 2 with a range of substituted pipera-
zines and piperidines. The analogs were synthesized via the Buch-
wald–Hartwig amination reaction39 and an aryl-bromide tertiary
sulfonamide advanced intermediate.40 The analogs were tested in
a time-resolved fluorescence biochemical assay that monitored
the ability of the human RORc-LBD to bind to a co-activator pep-
tide derived from steroid receptor co-activator-1 (SRC1).41 Com-
pounds that disrupted the recruitment of the SRC1 co-activator
peptide were RORc inverse agonists.20
piperazine group (14) led to a molecule with additional RORc
potency (EC50 = 57 nM) and an equivalent clogP value to 12. The
methyl carbamate analog (15) was a less potent RORc inverse ago-
nist than 14, and homologation of the amide functional group out-
side of the ring (16) also resulted in a loss of potency. In summary,
the exploration of the heterocyclic aliphatic N-linked rings identi-
fied the amide functionality in 14 as an optimal combination of
RORc inverse agonist potency and decreased lipophilicity relative
to the starting molecule (2). The notable drawback in this endeavor
was the lack of improvement in aqueous solubility values for most
analogs. Thus, we turned our attention to the N-alkyl substituent in
an effort to make further reductions in lipophilicity and potential
improvements in aqueous solubility.
As discussed earlier in the analysis of the X-ray co-structure of 1
with the RORc-LBD, the N-isobutyl group of the ligand resided in a
shallow lipophilic pocket but did not appear to make any specific
interactions with the protein. With this consideration in mind,
we sought to explore a variety of N-alkyl groups that could main-
tain or increase the potency of analogs, relative to 14, while also
lowering the lipophilicity. The N-alkyl analogs were synthesized
by either (1) alkylation of a secondary sulfonamide advanced inter-
mediate or (2) introduction of the bulkier N-alkyl groups early in
the synthesis then carrying the molecules through several standard
transformations to reveal the final compounds.40 Introduction of
the N-cyclobutyl group (Table 2, Compound 17) led to an approx-
imate two-fold improvement in the RORc inverse agonist potency
(EC50 = 30 nM) while also decreasing the clogP value 0.2 log units
Replacement of the terminal arene on 2 with an N-methanesul-
fonyl-piperazine (3) demonstrated that the change was tolerated,
with only a 10-fold loss in RORc inverse agonist potency while also
reducing the clogP42 value by 1.6 log units (Table 1). Homologation
of the sulfonamide functional group one atom outside of the ring
(4) provided
a molecule that was equipotent (RORc SRC1
EC50 = 20 nM) to 2 and less lipophilic. Removal of the sulfonamide
nitrogen in 4 provided sulfone analog 5 which was of similar
potency (RORc SRC1 EC50 = 42 nM). The collective results of ana-
logs 3–5 demonstrated that the orientation and distance of the sul-
fone moiety in relation to Arg367 could be important for potency,
but the sulfonamide N–H was not making any essential hydrogen
bonding interactions with the hydrophilic region of the ligand
binding pocket. To further explore the position of the sulfone moi-
ety, a 1,1-dioxothiomorpholine analog (6) was synthesized because
it had an improved clogP value versus the exocyclic sulfone analog
(5) (clogP = 2.3 and 3.7, respectively). Compound 6 was approxi-
mately 20-fold less potent than 5, further illustrating the impor-
tance of the appropriately positioned sulfonyl group to interact
with the RORc ligand binding pocket. It was also noted that com-
pounds 2–6 all contained multiple sulfonamide/sulfone functional
groups, and all of the compounds had low aqueous solubility val-
and increasing the aqueous solubility (37
tert-butyl isomer (18) resulted in a compound that was equipotent
to 17, yet less soluble (61 M) and more lipophilic. Replacement of
the iso-butyl group with a 3-oxetane ring (19) led to a substantial
loss of RORc potency (EC50 = 4.9 M) with improvements in solu-
bility (189 M) and lipophilicity. Introduction of the n-propyl,
lM). Synthesis of the
l
l
l
i-propyl, and c-propyl N-alkyl groups (compounds 20–22) were
all well tolerated (EC50 = 70, 37, 100 nM, respectively), and most
also provided notable improvements in lipophilicity and aqueous
solubility. The ethyl (23) and 2,2,2-trifluoroethyl (24) analogs also
possessed favorable RORc inverse agonist potencies (EC50 = 94 and
13 nM, respectively) while also displaying improved solubility and
lipophilicity profiles over 14. Polar functional groups such as
methoxyethyl (25) and N,N-dimethylaminoethyl (26) were poorly
tolerated in the lipophilic pocket of the RORc protein as were the
methyl (27) and methylenecyano (28) moieties. The results of
compounds 19 and 25–28 illustrated the tight SAR in the shallow
lipophilic pocket of the protein occupied by the isobutyl group
on 1 (ergo 14), as aliphatic or halogenated aliphatic moieties of a
certain size were the only tolerated N-alkyl substituents. The SAR
of the benzylic sulfonamide group on the right-hand side of the
molecule was also explored with a variety of aliphatic and hetero-
aromatic sulfonamide replacements. Ultimately, there were no
notable improvements over the parent benzylic sulfonamide group
(data not shown).
We analyzed the potent RORc inverse agonist compounds iden-
tified with the SRC1 co-activator recruitment assay in a panel of
HEK293 cell Gal4-ROR construct reporter assays. We profiled three
known isoforms of human ROR (RORc, RORb, and RORa) by moni-
toring the suppression of their basal transcriptional activity in the
absence of any exogenous agonist.41 In order to assess the NR cel-
lular selectivity of the potent RORc inverse agonists, we also tested
these compounds in cellular reporter assays of human farnesoid X
ues (61 l
M at pH 7.4).43 To explore the relationship of sulfones/
sulfonamides and solubility, we focused on other functional groups
in an effort to maintain the potency of 2 while improving the aque-
ous solubility of subsequent analogs. The morpholine analog (7)
was modestly potent in the RORc SRC1 co-activator peptide
recruitment assay (EC50 = 0.21 lM), and it was also more potent
than the corresponding 1,1-dioxothiomorpholine analog (6). This
result indicated that the sulfone or sulfonamide group might not
be the optimal functional group on the aliphatic heterocyclic ring
in the hydrophilic region of the RORc ligand binding pocket. Conse-
quently, we also explored a variety of functional groups. Com-
pound 8 was less potent in the SRC1 co-activator assay, relative
to 7, whereas
9 demonstrated improvements in potency
(EC50 = 0.10 M) and aqueous solubility. Methylation of the hydro-
l
xyl group on 9 resulted in the retention of RORc inverse agonist
potency and a reduction in aqueous solubility (Compound 10,
EC50 = 0.16 lM). Introduction of a nitrile moiety at the 4-position
of the piperidine (11) provided a further improvement in RORc
inverse agonist potency, as did the introduction of a primary amide
(12). Compound 12 was quite promising since it was less lipophilic
than 2, yet it had similar activity in the RORc SRC1 co-activator
peptide recruitment assay (EC50 = 70 nM). We explored other vari-
ants of this functional group such as the tertiary amide analog (13),
which was approximately 10-fold less active than 12. The N-acyl
receptor (FXR), liver X receptor (LXR)-a, LXRb, and pregnane X
receptor (PXR) in both agonist mode (no agonist ligand added)
and antagonist mode (using T0901317 as an exogenous ligand).41
In our NR cellular assays, we found 2 was a modestly potent
RORc inverse agonist (RORc cell EC50 = 0.45
lM) with only four-
fold selectivity over the other NRs in our assay panel (Table 3,