Wybutosine and Hydroxywybutosine
FULL PAPER
From the data, furthermore, it is evident that the amount
of modifications, measured in RNA isolated from cell cul-
ture and whole plants, are quite different. Twelve of 18 ob-
served modifications are more abundant in cells kept in cul-
adenine scaffold that bears an isoprenoid side chain at the
N6 nitrogen. Additionally, they are modified with different
C5 and C6 carbohydrates at various positions on the purine
scaffold or they carry a methylthio group at the 2-position
of the purine rings.[26] Therefore their structure is essentially
the same as that of the tRNA modifications i6A, io6A, and
ms2io6A. Due to the common appearance of the cytokinin
nucleobases and their corresponding nucleosides to the
tRNA nucleosides, it is suggested that both substrate classes
share the same biosynthetic enzymes, which are indeed
known to have a broad substrate specificity.[27] As cytokinins
are very important signal transducers during development
and differentiation of plants, a higher level of the corre-
sponding biosynthetic enzymes in developing plants could
lead to an increased level of i6A modifications in their
tRNAs.
ture than in plants. One modification, m2 G, is nearly un-
2
changed, and five modifications are more abundantly pres-
ent in plants. These five modifications can all be found in or
at the 3’-position adjacent to the anticodon and are there-
fore directly involved in the recognition of the anticodon
loop by the ribosome. It is also interesting that three of the
five modifications belong to the family of the i6A modifica-
tions; the others are m2A and t6A.
Our results for methyl RNA modifications are in good
agreement with previously published observations for tobac-
co plants, in which the methylation patterns were compared
between intact tobacco plants and the corresponding tobac-
co cell-culture samples. In this study, the authors also detect-
ed more methylated RNA nucleosides (m5C, m1G, m2G,
m2 G, m7G, m5U) in the cell-culture material than in whole
Conclusion
2
tobacco plants.[21] This difference was attributed to the un-
equal differentiation status of the plant cells in culture and
of the cells isolated from real plants. Since plant cells in cul-
ture experience the same environmental conditions and
have to be ready for development into different plant
organs, they all seem to express a similar set of proteins,
which gives a more uniform mRNA and tRNA composition
and hence also of the present modifications. In contrast,
cells in intact plants are already differentiated and therefore
their sets of proteins, mRNAs and tRNAs, are modified ac-
cording to their specific needs. This close connection of
tRNA composition and differentiation status has already
been shown for wheat and mimosa tissues.[22] Another factor
is the general difference in the culture conditions. Since cells
in cell culture can uptake nutrients from the culture
medium, they are, in contrast to real plants, not forced to
perform photosynthesis to grow.[23] Photosynthesis takes
place in chloroplasts, and these organelles have their own
DNA and ribosomes, and they produce their own set of
chloroplast tRNAs. These chloroplast tRNAs are known to
have fewer modification sites[24] and display an overall re-
duced modification content.[25] Therefore, they more resem-
ble prokaryotic tRNAs[24] and their reduced amount in cell-
culture total tRNA sets might dilute the number of modifi-
cations. The higher amount of m2A in plants can also be ex-
plained by this model. The modification m2A is prevalent in
procaryotic organisms but was also found in plants.[19] Since
photosynthesis in real plants generates higher levels of
chloroplasts and chloroplast tRNA is basically a prokaryotic
RNA, it is the higher tRNA level from the chloroplasts that
makes this modification more abundant in tRNAs isolated
from real plants.
In summary, we have developed a short and convenient syn-
thesis of the hypermodified nucleosides wybutosine and hy-
droxywybutosine. The procedures allowed us to synthesize
these molecules as isotope-labeled analogues as well, which
were needed for the quantification of tRNA modifications
of the plant species A. thaliana.
These data reveal different modification levels in cell-cul-
ture samples as opposed to whole plants. Our data show
that yW and OHyW are clearly detectable in tRNA from
plants, which indicates that they are more broadly present in
tRNAs than thought so far. The data show in addition a
larger modification content in plants than in plant cell cul-
tures. In agreement with a recent study, we believe that cul-
ture conditions, differentiation status, and the requirement
for specific needs within tissues of higher organisms have a
strong impact on the formation and distribution of tRNA
modifications within a cell.[18] In this study, the protein pro-
duction level and hence the translational efficiency was cor-
related to the tRNA modification level within different tis-
sues of mouse and pig. This provides support for the as-
sumption that the tRNA modification level adapts to envi-
ronmental conditions and to the metabolomic requirement
of the cells.
Experimental Section
(aS)-a-[(Methoxycarbonyl)amino]-4,6-dimethyl-9-oxo-3-(2’,3’,5’-tri-O-
acetyl-b-d-ribofuranosyl)-4,9-dihydro-3H-imidazoACTHNUGTRNEUNG[1,2-a]purine-7-butano-
ic acid methyl ester (12): Compound 8 (509 mg, 0.867 mmol) was put into
a dry and argon-flushed 10 mL Schlenk flask, dissolved in anhydrous
THF (2.5 mL), and cooled to À788C. Freshly titrated iPrMgCl (477 mL,
0.954 mmol, 2m in THF, 1.1 equiv) was added dropwise, and the reaction
mixture was stirred at À788C for 30 min. A solution of CuCN·2LiCl
(434 mL, 0.434 mmol, 1m in THF, 0.5 equiv) was added dropwise and the
solution was allowed to warm to À608C within 15 min, at which point 9
(131 mg, 0.433 mmol, 0.5 equiv), dissolved in anhydrous THF (1 mL),
was slowly added. The reaction mixture was slowly warmed to À258C
and stirred at this temperature for 16 h. The reaction was allowed to
The higher level of modifications of the i6A family in
whole plant samples can be attributed to a class of cytoki-
nins in plants that act as phytohormones. These cytokinins
are involved in growth and differentiation and therefore in-
fluence various processes like cell division, photosynthesis,
aging, and metabolism. One class of such cytokinins have an
Chem. Eur. J. 2013, 19, 4244 – 4248
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