Article
Serendipity and the Search for Short N‑-‑I Halogen Bonds
Eric Bosch*
Department of Chemistry, Missouri State University, Springfield, Missouri 65804, United States
ABSTRACT: The X-ray structure of the complex formed between N,N-
dimethylaminopyridine (DMAP) and 1,2-bis(iodoethynyl)benzene is reported.
The N---I halogen bond lengths are 2.654 and 2.662 Å, approximately 75% of the
sum of the van der Waals radii. On the basis of literature precedent and electrostatic
potential calculations, a series of fluorosubstituted iodophenylacetylenes were
prepared and individually complexed with dimethylaminopyridine in a search for
shorter halogen bonds. A N---I halogen bond distance of 2.680 Å was observed in
the DMAP complex with 3,5-difluoro(iodoethynyl)benzene, and halogen bond
distances of 2.622, 2.676, 2.700, and 2.705 Å were observed in the complex of 4-
fluoro(iodoethynyl)benzene with DMAP. These N---I bond distances range from
74.3 to 76.6% of the sum of the van der Waals radii.
A portion of these crystals were redissolved in dichloromethane and
placed on a short silica column, and the 1,2-bis(iodoethynyl)benzene
was eluted with a 10:1 mixture of hexanes and ethylacetate as an
almost colorless oil. 1H NMR δ (300 Mz, CDCl3) 7.42 (dd, J = 3.4, 5.8
Hz, 2H), 7.26 (dd, J = 3.4, 5.8 Hz, 2H). 13C NMR δ 132.50, 128.33,
126.75, 92.35, 69.67, 11.13.
INTRODUCTION
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Despite the fact that halogen bonding can be traced back to
1863,1 the interaction has only become recognized as a valuable
tool in crystal engineering over the past two decades.2,3 In this
article we describe the crystal structure of a halogen bonded
complex that we did not intend to form and then describe how
this led to an exploration of other extremely short N---I halogen
bonds. The specific application of iodoalkynes as halogen bond
donors is best known from the elegant synthetic application to
the solid-state formation of polyacetylenes based on halogen
bonding ordering of dialkynes in the solid state.4 We were
interested in preparing a series of bis-iodoalkynes for a crystal
engineering study and used the synthetic procedure published
by Meng, et al.5 We were surprised when NMR analysis of the
crude crystalline product isolated on preparation of 1,2-
bis(iodoethynyl)benzene indicated that this product was in
fact a 2:1 complex with N,N-dimethylaminopyridine. In this
paper we report the molecular structure of that complex and
the beautiful interlocked three-dimensional crystal packing.
This will be followed by the preliminary results of the search for
even stronger N---I halogen bonds using fluorinated
iodoethynylbenzenes.
Complex between N,N-Dimethylaminopyridine and 1,2-Bis-
(iodoethynyl)benzene, A. The complex was intentionally formed in
quantitative yield when the purified bis-iodoalkyne was mixed with 2
equiv of N,N-dimethylaminopyridine in dichloromethane solution.
Synthesis of 4-Fluoro-1-(iodoethynyl)benzene, 2. 4-Fluoropheny-
lacetylene (125 mg, 1.05 mmol) was reacted with iodine (315 mg, 1.24
mmol) in the presence of N,N-dimethylamino pyridine (156 mg, 1.28
mmol) in dichloromethane (3 mL) at room temperature.5 After 16 h
the reaction was treated with aqueous ammonium thiosulfate which
bleached the orange/brown color. The organic layer was diluted with
dichloromethane (10 mL), separated, and dried over sodium sulfate.
The solution was filtered, and the solvent was removed under vacuo.
The crude product was purified by flash chromatography with hexanes
as eluant yielding a colorless oil (182 mg, 71 %). 1H NMR δ (300 Mz,
CDCl3) 7.41 (mdd, J = 5.6, 9.2 Hz, 2H), 7.00 (mt, J = 9.2 Hz, 2H);
13C NMR δ 162.74 (d, JFC = 249.1 Hz), 134.24 (d, JFC = 8.8 Hz),
119.44 (d, JFC = 3.6 Hz), 115.54 (d, JFC = 21.0 Hz), 92.96, 6.06 (C−I);
19F NMR δ −109.66.
Complex between N,N-Dimethylaminopyridine and 4-Fluoro-1-
(iodoethynyl)benzene, B. N,N-Dimethylaminopyridine and 4-fluoro-
1-(iodoethynyl)benzene (0.01 mmol each) were added to a small
screw cap vial and dissolved with the minimum amount of
dichloromethane without heating. The dichloromethane was allowed
to slowly evaporate over several days to form a homogeneous mass of
blocklike crystals. 1H NMR δ (300 Mz, CDCl3) 8.22 (d, J = 5.1 Hz,
2H, dmap), 7.43 (m, 2H), 7.01 (m, 2H), 6.50 (d, J = 5.1 Hz, 2H,
dmap), 3.01 (s, 6H, dmap).
EXPERIMENTAL SECTION
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Synthesis. Synthesis of 1,2-Bis(iodoethynyl)benzene, 1. 1,2-
Bis(ethynyl)benzene (0.280 g) was reacted with iodine (1.36 g) in
the presence of N,N-dimethylamino pyridine (0.564 g) in dichloro-
methane (8 mL) at 40 °C for 24 h.5 The dark brown reaction mixture
was diluted with more dichloromethane (10 mL) and treated with
aqueous ammonium thiosulfate until the color bleached. The organic
layer was separated and dried over sodium sulfate. The solution was
filtered and the solvent was removed under a vacuum. The crude
product was diluted in 3 mL of dichloromethane and 2 equiv of N,N-
dimethylamino pyridine was added. The mixture was heated to form a
clear brown solution. After two days, large colorless blocklike crystals
of a 1:2 complex had formed. 1H NMR δ (300 Mz) CDCl3) 8.20 (d, J
= 6.6 Hz, 4 H, dmap), 7.41 (dd, J = 3.0, 5.7 Hz, 2H), 7.26 (dd, J = 3.0,
5.7 Hz, 2H), 6.49 (d, J = 6.6 Hz, 4H, dmap), 3.00 (s, 12H, dmap).
Synthesis of 3,5-Fluoro-1-(iodoethynyl)benzene, 3. 3,5-Difluor-
ophenylacetylene (210 mg, 1.52 mmol) was reacted with iodine (445
mg, 1.75 mmol) in the presence of N,N-dimethylamino pyridine (209
mg, 1.71 mmol) in dichloromethane (5 mL) at room temperature.5
Received: August 14, 2013
Revised: November 26, 2013
Published: December 2, 2013
© 2013 American Chemical Society
126
dx.doi.org/10.1021/cg401243h | Cryst. Growth Des. 2014, 14, 126−130