Journal of Medicinal Chemistry
Article
3.75−3.70 (m, 0.3H), 3.64 (br m, 1H), 3.51−3.49 (m, 1H), 3.36−3.30
(m, 0.3H), 3.26−3.15 (m, 0.7H), 2.91−2.85 (m, 0.3H), 2.84−2.72 (m,
0.7H), 2.68−2.50 (m, 3H), 2.35−2.21 (m, 1H), 2.21−2.15 (m, 0.3H),
2.05−1.89 (m, 5H), 1.84−1.79 (m, 0.7H), 1.75−1.70 (m, 1H), 1.66−
1.60 (m, 1H), 1.54−1.45 (m, 0.7H), 1.45−1.40 (m, 0.3H), 1.19−1.16
(m, 3H), 1.03−1.00 (m, 1H), 0.96 (d, J = 6.0 Hz, 2.1H), 0.88 (s, 9H),
0.74 (d, J = 6.0 Hz, 0.9H) ppm. 13C NMR (100 MHz, CDCl3, mixture
of rotamers): δ 177.8, 177.6, 175.9, 173.4, 173.4, 173.3, 172.7, 155.1,
155.1, 154.6, 144.4, 144.4, 144.2, 144.2, 144.2, 144.0, 143.9, 141.4,
141.4, 141.4, 141.3, 141.3, 128.0, 128.0, 127.8, 127.8, 127.5, 127.2,
127.1, 125.5, 125.4, 125.4, 125.3, 121.0, 121.0, 120.0, 120.0, 80.0, 80.0,
79.2, 78.7, 77.4, 76.2, 76.0, 75.6, 75.5, 71.8, 70.8, 70.4, 68.0, 67.9, 67.9,
67.7, 67.5, 59.7, 59.6, 47.3, 47.3, 47.1, 46.6, 46.0, 45.9, 45.4, 40.7, 39.7,
39.4, 39.2, 38.1, 38.0, 37.8, 37.6, 37.0, 34.8, 34.7, 32.9, 32.9, 32.3, 31.7,
31.3, 31.1, 30.2, 30.0, 30.0, 29.8, 29.4, 29.2, 28.7, 26.1, 26.0, 25.8, 25.4,
25.2, 25.1, 24.6, 23.4, 22.8, 20.8, 20.8, 20.6, 20.5, 16.6, 16.0, 14.3, 14.2
ppm. HRMS (ESI) m/z calcd for C38H50N2O7SNa (M + Na)+
701.3231, found 701.3253.
General Procedure D: Synthesis of Cyclic Precursors 36a−d. To a
solution of Fmoc protected tripeptide 62a−c (28.1 mg, 0.042 mmol) in
MeCN (1.2 mL) was added diethylamine (0.6 mL) at room
temperature. After being stirred at the same temperature for 30 min,
the reaction mixture was evaporated in vacuo, then azeotroped with
toluene and CH2Cl2 two times, respectively, and dried under reduced
pressure for 1 h to give the free amine tripeptide, which was used in
the next coupling reaction without further purification.
1.55 (m, 2.3H), 1.50−1.45 (m, 0.7H), 1.35−1.17 (m, 13H), 0.97−0.91
(m, 6H), 0.91−0.82 (m, 14.1H), 0.76 (d, J = 6.4 Hz, 0.9H) ppm. 13C
NMR (100 MHz, CDCl3, mixture of rotamers): δ 178.8, 178.3, 173.0,
172.7, 172.3, 172.2, 171.9, 171.6, 171.6, 171.4, 170.8, 169.7, 158.6,
154.9, 154.6, 144.6, 144.3, 144.0, 143.9, 141.4, 141.4, 141.3, 131.8,
130.5, 130.5, 130.4, 128.4, 128.3, 127.8, 127.7, 127.1, 125.5, 125.4,
125.4, 125.3, 120.0, 120.0, 118.8, 113.9, 79.4, 78.7, 77.4, 76.1, 75.7,
75.2, 75.0, 68.0, 67.7, 66.1, 65.5, 64.6, 60.5, 59.8, 59.6, 55.3, 53.6, 50.4,
49.8, 49.3, 47.3, 47.2, 47.1, 46.6, 45.9, 45.4, 38.1, 37.9, 37.0, 36.6, 34.8,
34.7, 34.5, 33.7, 33.5, 33.3, 32.0, 31.7, 31.3, 31.0, 31.0, 30.9, 30.6, 30.1,
29.8, 26.1, 25.6, 25.4, 25.1, 24.6, 24.0, 23.7, 23.5, 22.8, 20.8, 20.7, 20.6,
16.2, 15.9, 15.0, 14.9, 14.4, 14.3, 11.7, 10.7 ppm. HRMS (ESI) m/z
calcd for C63H87N5O11SNa (M + Na)+ 1144.6015, found 1144.6041.
Cyclic Precursor 36d. Yield 22.0 mg, 71%; [α]20 −66.0 (c 0.05,
D
CH2Cl2). 1H NMR (400 MHz, CDCl3, mixture of rotamers): δ 7.77−
7.74 (m, 2H), 7.65−7.60 (m, 2H), 7.39 (dd, J = 7.6, 7.2 Hz, 2H), 7.30
(dd, J = 7.2, 6.8 Hz, 2H), 7.10−7.07 (m, 2H), 6.78−6.75 (m, 2H),
5.92−5.81 (m, 1H), 5.39−5.35 (m, 1H), 5.31−5.21 (m, 2H), 5.18−
5.11 (m, 1H), 4.93−4.81 (m, 2H), 4.62−4.53 (m, 2H), 4.46−4.21 (m,
5H), 3.81−3.69 (m, 4H), 3.69−3.60 (m, 1H), 3.58−3.49 (m, 1H),
3.22−3.18 (m, 1H), 3.03−2.88 (m, 4H), 2.82−2.76 (m, 3H), 2.71−
2.57 (m, 4H), 2.34−2.21 (m, 4H), 2.11−1.79 (m, 8H), 1.71 (br m,
1H), 1.64−1.58 (m, 1H), 1.34−1.18 (m, 5H), 0.97−0.78 (m, 21H)
ppm. 13C NMR (100 MHz, CDCl3, mixture of rotamers): δ 175.1,
174.6, 173.2, 172.9, 172.7, 172.6, 172.3, 172.2, 172.0, 172.0, 171.9,
171.9, 171.8, 171.6, 171.5, 171.4, 170.8, 169.7, 158.7, 158.6, 155.1,
155.0, 154.5, 144.5, 144.4, 144.3, 144.2, 144.1, 144.0, 143.9, 141.4,
141.4, 141.3, 131.8, 130.5, 128.5, 128.3, 128.0, 127.8, 127.1, 125.5,
125.4, 125.4, 125.3, 120.0, 118.8, 114.0, 113.9, 79.7, 78.8, 77.4, 76.2,
75.9, 75.6, 71.8, 70.9, 70.3, 67.9, 67.8, 67.6, 66.1, 65.5, 60.5, 59.8, 59.7,
59.7, 55.3, 50.4, 49.9, 47.3, 47.3, 47.2, 47.1, 46.6, 45.8, 45.2, 45.0, 40.8,
39.8, 39.6, 38.1, 37.8, 37.7, 37.3, 37.3, 34.8, 34.7, 33.5, 33.4, 32.1, 31.7,
31.4, 31.0, 31.0, 30.7, 30.6, 30.1, 30.1, 29.8, 26.1, 25.7, 25.4, 25.2, 25.1,
24.6, 23.4, 22.8, 20.7, 20.6, 16.8, 16.4, 15.9, 14.4, 14.4, 14.3, 13.9, 11.8,
11.6, 10.7 ppm. HRMS (ESI) m/z calcd for C62H85N5O11SNa (M +
Na)+ 1130.5859, found 1130.5905.
The above crude free amine tripeptide was dissolved in CH2Cl2
(THF for 2b) (2 mL). To this solution were added acid 2 (0.028
mmol), corresponding coupling reagent (0.056 mmol) (PyAOP for
2a,c,d and DEPBT for 2b), and DIEA (0.014 mL, 0.083 mmol) at
room temperature. After being stirred at the same temperature for 15−
24 h, the reaction mixture was concentrated in vacuo and purified by
preparative TLC plate (developed by acetone/hexane (2:3, v/v)) to
give the precursor 36a−d as a colorless oil.
Cyclic Precursor 36b. Yield 22.0 mg, 72%; [α]20 −99.3 (c 0.14,
D
CH2Cl2). 1H NMR (400 MHz, CDCl3, mixture of rotamers): δ 7.77−
7.74 (m, 2H), 7.64−7.62 (m, 1.7H), 7.56 (d, J = 7.6 Hz, 0.3H), 7.39
(dd, J = 7.6, 7.4 Hz, 2H), 7.32−7.26 (m, 2H), 7.09 (d, J = 8.0 Hz, 2H),
6.76 (d, J = 8.0 Hz, 2H), 6.63 (d, J = 8.0 Hz, 0.3H), 6.49 (br m, 0.3H),
6.34−6.27 (m, 1H), 6.20−6.12 (m, 0.3H), 5.92−5.83 (m, 0.7H),
5.54−5.47 (m, 0.3H), 5.42−5.35 (m, 0.7H), 5.31−5.17 (m, 2.7H),
5.11−5.06 (m, 0.3H), 4.94−4.85 (m, 1.7H), 4.62−4.50 (m, 2H),
4.47−4.35 (m, 2.3H), 4.27 (t, J = 7.2 Hz, 1H), 4.20−4.16 (m, 1.4H),
3.74 (s, 3H), 3.72−3.64 (m, 1.3H), 3.60−3.54 (m, 1H), 3.26−3.07 (m,
1H), 3.02−2.90 (m, 4H), 2.83−2.77 (m, 2H), 2.77−2.60 (m, 4H),
2.50−2.46 (m, 0.7H), 2.39−2.19 (m, 4H), 2.18−1.90 (m, 6.3H),
1.87−1.78 (m, 1H), 1.73 (br m, 1H), 1.61 (br m, 0.7H), 1.55−1.49
(m, 1H), 1.42−1.38 (m, 1H), 1.27−1.21 (m, 3H), 1.00−0.84 (m,
19.1H), 0.68 (d, J = 6.4 Hz, 0.9H) ppm. 13C NMR (100 MHz, CDCl3,
mixture of rotamers): δ 172.7, 172.1, 172.0, 171.9, 171.6, 171.6, 170.8,
158.7, 154.8, 154.4, 144.3, 144.2, 144.1, 143.9, 141.4, 141.3, 131.8,
131.4, 130.5, 130.4, 128.2, 128.2, 127.8, 127.8, 127.2, 127.1, 127.1,
126.4, 125.5, 125.4, 125.3, 120.1, 118.8, 114.0, 79.6, 79.1, 77.4, 75.9,
75.7, 67.9, 67.7, 66.1, 65.5, 60.6, 59.6, 59.4, 55.3, 50.4, 49.8, 49.2, 47.3,
47.1, 46.6, 38.7, 38.2, 37.9, 37.2, 37.1, 36.8, 34.8, 34.5, 33.7, 33.4, 32.1,
31.7, 31.5, 31.1, 31.0, 30.7, 30.2, 29.8, 29.6, 29.5, 28.8, 26.1, 25.1, 24.6,
23.5, 22.8, 21.1, 20.7, 16.2, 15.9, 14.5, 14.4, 14.3, 11.8, 10.7 ppm.
HRMS (ESI) m/z calcd for C61H83N5O11SNa (M + Na)+ 1116.5702,
found 1116.5742.
General Procedure E: Synthesis of 1a−d. To a solution of cyclic
precursor 36 (11.6 μmol) in THF (1.0 mL) were added Pd(PPh3)4
(2.7 mg, 2.32 μmol) and N-methylaniline (6.3 μL, 58.0 μmol) at room
temperature under argon. This reaction was protected with aluminum
foil. After being stirred at the same temperature for 1 h, the reaction
mixture was concentrated in vacuo and purified by preparative TLC
plate (developed with MeOH/CH2Cl2 1:9, v/v) to give the free acid
cyclic precursor.
To the solution of free acid cyclic precursor in MeCN (1.5 mL) was
added N,N-diethylamine (0.75 mL). After being stirred at room
temperature for 30 min, the reaction mixture was evaporated in vacuo,
azeotroped with toluene (three times) and CH2Cl2 (two times), and
then dried under reduced pressure for 1 h to give the unmasked
precursor as a foam solid. Then the unmasked precursor was dissolved
in CH2Cl2 (DMF for 36b) (20 mL). To this solution were added
DIEA (20.0 μL, 0.116 mmol) and corresponding coupling reagent
(34.8 μmol) at 0 °C (PyAOP for 36a,c,d and DEPBT for 36b). After
being stirred at 0 °C for 30 min, the reaction was allowed to warm up
to room temperature and stirred for additional 15 h. Then the reaction
was concentrated in vacuo and purified by semipreparative reversed-
phase HPLC (Phenomenex Ultracarb, ODS 250 mm × 10 mm, 5 μm,
3.0 mL/min, UV detection at 200/220 nm) using an isocratic system
of 80% aqueous MeCN for 30 min, 80−100% MeCN for 30−40 min,
and 100% MeCN for 40−60 min to afford 1a−d.
Cyclic Precursor 36c. Yield 28.3 mg, 90%; [α]20 −130.0 (c 0.10,
D
CH2Cl2). 1H NMR (400 MHz, CDCl3, mixture of rotamers): δ 7.76−
7.73 (m, 2H), 7.65−7.59 (m, 2H), 7.40−7.36 (m, 2H), 7.31−7.26 (m,
2H), 7.10−7.08 (m, 2H), 6.85 (d, J = 8.4 Hz, 0.3H), 6.77−6.74 (m,
2H), 6.65 (d, J = 8.0 Hz, 0.7H), 5.92−5.82 (m, 1H), 5.37 (dddd, J =
6.8, 6.8, 6.8, 6.8 Hz, 1H), 5.31−5.20 (m, 2H), 5.20−5.14 (m, 1H),
4.93−4.87 (m, 1.7H), 4.81 (d, J = 10.8 Hz, 0.3H), 4.62−4.51 (m, 3H),
4.46−4.41 (m, 2H), 4.33−4.24 (m, 3H), 3.74 (s, 3H), 3.68−3.62 (m,
1.3H), 3.60−3.48 (m, 1.7H), 3.18 (ddd, J = 18.8, 10.8, 8.8 Hz, 1H),
3.03−2.95 (m, 4H), 2.82−2.73 (m, 2H), 2.68 (s, 2.1H), 2.65 (s, 0.9H),
2.43−2.17 (m, 4H), 2.15−1.86 (m, 5H), 1.85−1.75 (m, 2H), 1.70−
Apratoxin S7 (1b). Yield 2.3 mg, 25% in 3 steps; [α]20 −106.2 (c
D
1
0.024, CH2Cl2); tR = 17.5 min. H NMR (600 MHz, CDCl3, mixture
of rotamers, major and minor (6/4)): δ 7.14 (d, J = 8.4 Hz, 1.2H),
7.10 (d, J = 8.4 Hz, 0.8H), 6.80 (d, J = 8.4 Hz, 0.8H), 6.79 (d, J = 8.4
Hz, 1.2H), 6.17 (d, J = 9.0 Hz, 0.4H), 5.78 (d, J = 10.2 Hz, 0.6H), 5.26
(d, J = 11.4 Hz, 0.6H), 5.20−5.16 (m, 0.4H), 5.15 (ddd, J = 15.0, 10.2,
4.8 Hz, 0.6H), 4.96 (dd, J = 12.6, 2.4 Hz, 0.6H), 4.89 (d, J = 11.4 Hz,
0.4H), 4.87 (dd, J = 12.6, 2.4 Hz, 0.4H), 4.64 (q, J = 6.6 Hz, 0.4H),
4.60 (d, J = 10.8 Hz, 0.6H), 4.38−4.31 (m, 1.2H), 4.24−4.19 (m, 1H),
4.11−4.08 (m, 0.4H), 4.05 (br m, 0.4H), 4.00−3.95 (m, 0.6H), 3.90
3025
dx.doi.org/10.1021/jm4019965 | J. Med. Chem. 2014, 57, 3011−3029