Journal of Medicinal Chemistry
Brief Article
and the reaction stirred at RT for 2 h. This mixture was then
concentrated to dryness and the residue dissolved in a minimal
amount of CH2Cl2, and then 2 mL each of ethyl ether and hexanes was
added to precipitate the acid. This was filtered, washed with hexanes,
and then dried under vacuum to provide 5 (67.3 mg, 86%) as an off-
white powder. 1H NMR (CD3OD) δ 8.71 (d, J = 8.0 Hz, 1H), 8.29 (d,
J = 1.6 Hz, 1H), 7.99 (d, J = 2.0 Hz, 1H), 7.63 (d, J = 8.4 Hz, 2H),
7.37 (d, J = 8.9 Hz, 1H), 7.26 (d, J = 8.0 Hz, 2H), 7.20 (dd, J = 2.0, 8.9
Hz, 1H), 4.97−5.15 (m, 2H), 4.38−4.53 (m, 1H), 2.35 (s, 3H), 1.58−
1.79 (m, 3H), 0.94 (dd, J = 5.9, 19.5 Hz, 6H). 13C NMR (CD3OD) δ
21.39, 21.69, 23.35, 26.11, 41.51, 50.53, 52.35, 103.00, 104.59, 110.56,
112.39, 116.26, 120.93, 128.39, 128.54, 130.51, 135.49, 136.26, 137.95,
achieve parity. While this is possible, radioactive NT is
commercially available and far more convenient to obtain.29
Empirically, however, we observe that every compound so far
identified that inhibits 3b in the FLIPR assay also competes
with NT in the binding assay, suggesting that the difference in
magnitude of effect does not prevent the detection of NTS2
active compounds.
As noted above, we do not know that 5 is competing directly
with 3b for its binding site, this is only a working assumption.
There is, however, empirical evidence that supports the
assumption that the binding sites for 3b and NT are, at least
partially, overlapping. The most important observation is that
NT, 3a, 3b, and 5 all rely heavily upon a free carboxylic acid
group for binding to NTS2 (and NTS1). In studies of the
NTS1 receptor, the ionic interaction established by the binding
of this group to an arginine residue in the receptor, formed the
principle ligand to receptor stabilizing interaction.30 Along with
this, a partially overlapping scenario has been postulated for NT
and 3a binding sites based on evidence obtained from
molecular modeling and point mutation studies at the NTS1
receptor.31 Although not conclusive, these observations do offer
support to the notion that these compounds all share partially
overlapping binding sites.
142.01, 142.09, 144.94, 168.73, 175.58. 19F NMR (CD3OD) δ −74.02.
25
D
MS (ESI): 552.7 (M − H)−; [α]
(C25H26F3N3O6S): C, H, N.
−17.1 (c 0.62, CH3OH). Anal.
Methyl (5-Nitro-1H-indol-1-yl)acetate (8). Into a 250 mL RBF
with a magnetic stir bar are placed 5-nitroindole (7, 4.864 g, 0.030
mol) and K2CO3 (4.561 g, 0.033 mol) and 90 mL of acetone. The
methyl bromoacetate (5.048 g, 0.033 mol, 3.10 mL) was added over a
minute via syringe and then stirred 4 days at RT. The reaction was
then concentrated, poured into water, and extracted with EtOAc (2×),
and the combined organics were washed (H2O, brine) and dried
(Na2SO4) and concentrated to give a yellow oil. This was
chromatographed on an ISCO silica gel column (80 g) using a 0−
60% EtOAc/hexanes gradient and then crystallized from ethyl acetate
1
to give the desired product as a yellow solid (4.38 g, 65% yield). H
NMR (CDCl3) δ 8.60 (d, J = 2.1 Hz, 1 H), 8.14 (dd, J = 2.2, 9.1 Hz, 1
H), 7.26 (d, J = 9.1 Hz, 1 H), 7.25 (d, J = 3.3 Hz, 1 H), 6.75 (d, J = 3.2
Hz, 1 H), 4.92 (s, 2 H), 3.78 (s, 3 H).
SUMMARY
■
The work presented herein provides additional evidence that
3b can be used as an agonist in the NTS2 FLIPR assay to
identify novel NTS2 active compounds. Because NT is an
antagonist of 3b, novel NT-like antagonist compounds can be
identified. To our knowledge, 5 is the first nonpeptide
compound that behaves like, and is more active than, the
endogenous ligand in this functional assay. This work
compliments our discovery of compound 4, providing an
additional nonpeptide compound whose in vitro properties
align with those of compounds that are known to be active in
models of pain. Together, 4 and 5 should be useful in
additional studies related to the biology of the NT receptors.
We are evaluating these compounds in animal models of pain
to establish the relevance of this assay with respect to
identification of potential NTS2-based analgesics. Additional
SAR studies with 5 are in progress and will be reported in the
near future.
(5-Nitro-1H-indol-1-yl)acetic Acid (9). To a solution of 8 (10.10
g, 0.045 mol) in 50 mL of 1,4-dioxane was added 50 mL of 1 N LiOH,
and this was stirred overnight at RT. The reaction was concentrated to
remove dioxane and then diluted with 100 mL of H2O and acidified to
pH 2. This was then extracted with 100 mL of ethyl acetate (3×), and
the combined organic layers were dried over Na2SO4. Concentration
1
gave 9 (8.72 g, 88%) as a white solid. H NMR (DMSO-d6) δ 13.13
(br s, 1H), 8.58 (d, J = 2.3 Hz, 1 H), 8.03 (dd, J = 2.3, 9.0 Hz, 1 H),
7.66−7.58 (m, 2 H), 6.76 (d, J = 3.2 Hz, 1 H), 5.16 (s, 2 H). MS
(ESI): 219.3 (M − H)−.
tert-Butyl N-[(5-Nitro-1H-indol-1-yl)acetyl]-L-leucinate (10).
Into a 100 mL RBF with stir bar containing 9 (2.202 g, 0.010 mol),
(S)-(L)-leucine tert-butyl ester HCl salt (2.461 g, 0.011 mol), and
HBTU (4.172g, 0.011 mol) was added CH2Cl2 (50 mL) and then
Et3N (3.036 g, 0.030 mol, 4.18 mL), and this was stirred at RT
overnight. The reaction mixture was then concentrated and chromato-
graphed on an 80 g ISCO silica gel column using a 10−60% gradient
of EtOAc in hexanes to give 10 (4.07 g) as a yellow oil which
crystallized when dried under vacuum to give a yellow−orange solid
1
EXPERIMENTAL SECTION
(3.859 g, 99%). H NMR (CDCl3) δ 8.59 (d, J = 2.2 Hz, 1 H), 8.13
■
(dd, J = 2.2, 9.0 Hz, 1 H), 7.35 (d, J = 9.0 Hz, 1 H), 7.31 (d, J = 3.3
Hz, 1 H), 6.80 (dd, J = 0.5, 3.2 Hz, 1 H), 5.96 (d, J = 8.3 Hz, 1 H),
4.88 (s, 2 H), 4.50 (dt, J = 5.2, 8.5 Hz, 1 H), 1.59−1.42 (m, 2 H), 1.40
(s, 9 H), 0.85 (dd, J = 3.3, 6.2 Hz, 6 H). MS (ESI): 360.5 (M + H)+.
tert-Butyl N-[(5-Amino-1H-indol-1-yl)acetyl]-L-leucinate (11).
10 (3.894 g, 0.010 mol) was dissolved in ethanol (200 mL) and
reduced using a Parr apparatus with 10% Pd/C (400 mg) under 40
psig of H2. The reaction mixture was filtered through Celite, the cake
was washed with EtOH, and the filtrate was concentrated under
vacuum. Drying under HVAC gave 11 (3.620 g, 100%) as a red oil.
[NOTE: This material darkens with exposure to air.] 1H NMR
(CDCl3) δ 7.09 (d, J = 8.6 Hz, 1 H), 7.01 (d, J = 3.1 Hz, 1 H), 6.96 (d,
J = 2.1 Hz, 1 H), 6.72 (dd, J = 2.2, 8.6 Hz, 1 H), 6.44 (d, J = 2.7 Hz, 1
H), 5.62 (d, J = 8.5 Hz, 1 H), 4.74 (s, 2 H), 4.45 (dt, J = 5.1, 8.7 Hz, 1
H), 1.50−1.41 (m, 2 H), 1.36 (s, 9 H), 1.31−1.20 (m, 1 H), 0.81 (dd,
J = 6.4, 7.8 Hz, 6 H). MS (ESI): 358.5 (M − H)−, 360.3 (M + H)+.
tert-Butyl N-({5-[(4-Methylphenylsulfonyl)amino]-1H-indol-
1-yl}acetyl)-L-leucinate (12). 11 (3.595 g, 0.010 mol) was dissolved
in CH2Cl2 (50 mL) in a 250 mL RBF equipped with a stir bar. DMAP
(1.344 g, 0.011 mol) was added, followed by a solution of tosyl
chloride (2.002 g, 0.011 mol) in CH2Cl2 (20 mL). The reaction was
Reactions were conducted under a nitrogen atmosphere using oven-
dried glassware as required. All solvents and chemicals used were
reagent grade. 5-Nitroindole (7) was purchased from Combi-blocks,
Inc. Flash column chromatography was carried out using a Teledyne
ISCO Combiflash Rf system and Redisep Rf gold prepacked HP silica
columns. Flow rates are automatically determined by column size.
Fractions were collected as “peaks only” over 30 min. The purity of
target compounds was determined to be ≥95% by combustion
analysis. NMR spectra were recorded on a Bruker Avance DPX-300
(300 MHz). Low-resolution mass spectra were obtained using a
Waters Alliance HT/Micromass ZQ system (ESI) in both positive and
negative mode. Optical rotations were measured on an Auto Pol III
polarimeter at the sodium D line. Thin layer chromatography (TLC)
was performed on EMD precoated silica gel 60 F254 plates, and spots
were visualized with UV light and I2 or phosphomolybdic acid stain.
CHO-k1 cells were from the American Type Culture Collection, and
[
125I]NT was from PerkinElmer. Calcium 5 dye was from Molecular
Devices. Cell culture reagents were from Life Technologies.
N-{[5-{[(4-Methylphenyl)sulfonyl]amino}-3-(trifluoroacetyl)-
1H-indol-1-yl]acetyl}-L-leucine (5). 14 (78.0 mg, 0.14 mmol) was
dissolved in dry CH2Cl2 (2 mL), and to this was added TFA (2 mL)
7475
dx.doi.org/10.1021/jm500857r | J. Med. Chem. 2014, 57, 7472−7477