Page 7 of 11
Bioconjugate Chemistry
DCM for 3 times. Combined organic material was dried over organic material was extracted with DCM for 3 times. Com-
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anhydrous Na2SO4 and concentrated. Combined organic phase
was purified with silica-gel flash column chromatography
(EA:Hexane = 1:6 — ethyl acetate 15%) to afford IA-E (0.52
mg, 43.8% yield) as a yellow solid; 1H NMR (400 MHz, CDCl3)
δ 10.0 (d, J = 7.2 Hz, 1H), 8.70 (s, 1H), 7.91 (d, J = 7.6 Hz, 2H),
7.82 (s, 1H), 7.79 (d, J = 8.0 Hz, 2H), 7.23 (d, J = 7.2 Hz, 1H),
4.40 (q, J = 7.2 Hz, 2H), 1.41 (t, J = 7.2 Hz, 3H); 13C NMR (100
MHz, CDCl3), δ 184.0, 162.8, 141.9, 137.7, 133.3, 132.6, 129.3,
128.9, 125.3, 124.7, 124.0, 122.6, 122.0, 121.2, 117.1, 110.9,
108.9, 60.6, 14.4; HRMS (ESI) m/z calcd for C20H14F6NO3
[M+H]+: 430.0878; found: 430.0872.
bined organic material was dried over anhydrous Na2SO4 and
concentrated. Crude product was purified with silica-gel flash
column chromatography (EA:Hexane = 1:4 — ethyl acetate
25%) to afford KIz 3 (48.7 mg, 96.0% yield) as a yellow solid;
1H NMR (400 MHz, CDCl3) δ 10.05 (d, J = 7.6 Hz, 1H), 8.14
(s, 1H), 7.95 (d, J = 8.0 Hz, 2H), 7.79 (d, J = 8.0 Hz, 2H), 7.55
(s, 1H), 7.53 (d, J = 3.6 Hz, 2H), 7.49 (d, J = 3.2 Hz, 2H), 7.39
(d, J = 7.2 Hz, 1H), 7.14 (dd, J = 7.4 Hz, 2.4 Hz, 1H); 13C NMR
(100 MHz, CDCl3) δ 183.7, 143.1, 134.4, 133.3, 133.2, 132.9,
129.3, 129.2, 128.1, 127.5, 126.6, 125.8, 125.5, 125.4, 125.1,
124.7, 122.9, 122.0, 120.9, 115.7, 110.1; HRMS (ESI) m/z calcd
for C23H14F6NO [M+H]+: 434.0980; found: 434.0979.
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IA-B. To a solution IA-E (517.9 mg, 1.2 mmol) in methanol
(10 mL) was added KOH (5.39 g, 96.0 mmol). The reaction
mixture was stirred at room temperature for overnight. Reaction
mixture was acidified with 6 N HCl and resulting solid was col-
lected by filtration, washed with water and dried in drying oven
to afford IA-A as a brown solid. Resulting product was used in
the next step without further purification. To a slurry of result-
ing IA-A in DMF (10 mL) was added sodium bicarbonate
(302.4 mg, 3.6 mmol) and NBS (320.3 mg, 1.8 mmol) was
added to the reaction mixture portionwise at 0 °C. The reaction
mixture was stirred at ambient temperature for 12 hrs. Resulting
crude product was washed with water and organic material was
extracted with DCM for 3 times. Combined organic material
was dried over anhydrous Na2SO4 and concentrated. Crude
product was purified with silica-gel flash column chromatog-
raphy (EA:Hexane = 1:8 — ethyl acetate 12%) to afford IA-B
(434.1 mg, 82.9% yield) as a yellow solid; 1H NMR (400 MHz,
CDCl3) δ 9.95 (d, J = 7.2 Hz, 1H), 7.90 (s, 2H), 7.87 (s, 1H),
7.78 (d, J = 8.0 Hz, 2H), 7.40 (s, 1H), 7.13 (dd, J = 7.2 Hz, 2.0
Hz, 1H); 13C NMR (100 MHz, CDCl3) δ 183.1, 142.4, 135.0,
133.1, 129.2, 127.6, 126.6, 125.6, 125.5, 124.4, 123.0, 121.7,
115.4, 110.4, 93.0; LRMS (ESI) m/z calcd for C17H9BrF6NO
[M+H]+: 435.97; found: 436.05.
KIz 5. To a solution of IA-B (51.4 mg, 0.11 mmol) in
DMF:H2O = 2:1 mixture was added 4-(dimethylamino)phenyl
boronic acid (78.0 mg, 0.47 mmol), tetrakis(triphenyl phos-
phine)palladium(0) (231.0 mg, 20.0 mol%) and sodium car-
bonate (50 mg, 0.47 mmol). Resulting reaction mixture was
stirred at 100 °C for additional 12 hrs. After the reaction com-
pletion, monitored with TLC, the resulting crude product was
washed with water and organic material was extracted with
DCM for 3 times. Combined organic material was dried over
anhydrous Na2SO4 and concentrated. Crude product was puri-
fied with silica-gel flash column chromatography (EA:Hexane
= 1:4 — ethyl acetate 25%) to afford KIz 5 (51.5 mg, 91.6%
yield) as an orange solid; 1H NMR (400 MHz, CDCl3) δ 10.01
(d, J = 7.6 Hz, 1H), 8.12 (s, 1H), 7.94 (d, J = 8.0 Hz, 2H), 7.78
(d, J = 8.0 Hz, 2H), 7.41 (d, J = 5.0 Hz, 2H), 7.40 (s, 1H), 7.09
(d, J = 7.6 Hz, 1H), 6.84 (d, J = 7.6 Hz, 2H), 3.02 (s, 6H); 13
C
NMR (100 MHz, CDCl3) δ 183.4, 149.8, 143.3, 134.3, 132.9,
132.6, 129.2, 129.1, 128.8, 125.9, 125.7, 125.5, 125.1, 124.7,
122.6, 122.4, 122.0, 121.5, 121.4, 121.0, 116.0, 115.9, 112.9,
109.7, 40.6; LRMS (ESI) m/z calcd for C25H19F6N2O [M+H]+:
477.13; found: 477.35.
Compound IC-E. Reaction mixture of 4-(trifluoromethyl)pyr-
idine (348.0 µL, 3.00 mmol) and 2-bromoacetophenone (0.63
mg, 3.15 mmol) in DMF (7.0 mL) was stirred at 100 °C for
overnight. After reaction completion, ethyl acrylate (160.0 µL,
0.50 mmol), copper (II) acetate monohydrate (0.89 g, 1.50
mmol) and sodium acetate (0.74 g, 9.00 mmol) was added to
the reaction mixture. Resulting reaction mixture was stirred at
100 °C for additional 16 hrs. After the reaction completion,
monitored with TLC, the copper acetate was removed by filtra-
tion through celite pad and the resulting filtrate was concen-
trated in vacuo. Resulting crude product was washed with water
and organic material was extracted with DCM for 3 times. Com-
bined organic material was dried over anhydrous Na2SO4 and
concentrated. Combined organic phase was purified with silica-
gel flash column chromatography (EA:Hexane = 1:6 — ethyl
acetate 15%) to afford IC-E (0.48 g, 88.9% yield) as a yellow
solid; 1H NMR (400 MHz, CDCl3) δ 9.88 (d, J = 7.6 Hz, 1H),
8.59 (s, 1H), 7.78 (s, 1H), 7.74 (d, J = 6.8 Hz, 2H), 7.53 (t, J =
7.4 Hz, 1H), 7.44 (d, J = 7.6 Hz, 2H), 7.10 (dd, J = 7.4 Hz, 2.0
KIz 1. To a solution of IA-B (50.4 mg, 0.11 mmol) in
DMF:H2O = 2:1 mixture was added 4-trifulorophenyl boronic
acid (88.0 mg, 0.46 mmol), tetrakis(triphenyl phosphine)palla-
dium(0) (231.0 mg, 20.0 mol%) and sodium carbonate (49.0 mg,
0.46 mmol). Resulting reaction mixture was stirred at 100 °C
for additional 12 hrs. After the reaction completion, monitored
with TLC, the resulting crude product was washed with water
and organic material was extracted with DCM for 3 times. Com-
bined organic material was dried over anhydrous Na2SO4 and
concentrated. Crude product was purified with silica-gel flash
column chromatography (EA:Hexane = 1:4 — ethyl acetate
25%) to afford KIz 1 (50.0 mg, 86.7% yield) as a yellow solid;
1H NMR (400 MHz, CDCl3) δ 10.07 (d, J = 7.6 Hz, 1H), 8.11
(s, 1H), 7.95 (d, J = 8.8 Hz, 2H), 7.80 (d, J = 8.8 Hz, 2H), 7.74
(d, J = 8.4 Hz, 2H), 7.66 (s, 1H), 7.64 (s, 1H), 7.52 (s, 1H), 7.18
(dd, J = 7.4 Hz, 2 Hz, 1H); 13C NMR (100 MHz, CDCl3) δ 183.9,
142.9, 137.1, 134.4, 133.4, 133.1, 129.5, 129.2, 128.3, 127.3,
127.0, 126.2, 126.0, 125.6, 125.1, 124.5, 123.2, 122.8, 122.4,
121.8, 119.2, 115.3, 110.4; LRMS (ESI) m/z calcd for
C24H13F9NO [M+H]+: 502.08; found: 502.10.
Hz, 1H), 4.35 (q, J = 7.1 Hz, 2H), 1.37 (t, J = 7.0 Hz, 3H); 13
C
NMR (100 MHz, CDCl3) δ 185.3, 163.0, 138.8, 137.2, 131.7,
129.2, 128.8, 128.5, 128.3, 128.2, 128.0, 124.2, 123.2, 121.5,
117.0, 110.4, 108.5, 60.5, 14.5; LRMS (ESI) m/z calcd for
C19H15F3NO3 [M+H]+: 362.09; found: 362.10.
KIz 3. To a solution of IA-B (51.2 mg, 0.11 mmol) in
DMF:H2O = 2:1 mixture was added phenyl boronic acid (57.0
mg, 0.46 mmol), tetrakis(triphenyl phosphine)palladium(0)
(231 mg, 20.0 mol%) and sodium carbonate (49.0 mg, 0.46
mmol). Resulting reaction mixture was stirred at 100 °C for ad-
ditional 12 hrs. After the reaction completion, monitored with
TLC, the resulting crude product was washed with water and
IC-B. To a solution IC-E (481.9 mg, 1.3 mmol) in methanol
(10 mL) was added KOH (519.0 mg, 10.0 mmol). The reaction
mixture was stirred at room temperature for 4 hrs. Reaction
mixture was acidified with 6 N HCl and resulting solid was col-
lected by filtration, washed with water and dried in drying oven
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