5102 J ournal of Medicinal Chemistry, 1998, Vol. 41, No. 25
Ogawa et al.
dissolved in a mixture of concentrated HCl (3 mL) and MeOH
(7 mL) at room temperature under argon atmosphere. After
the mixture was stirred at room temperature for 24 h, the
resulting crystals were collected by filtration to give 19 (306
mg, 91%): mp 170-172 °C; LRMS (FAB) m/z 259 (MH+, 42%);
1H NMR (MeOH-d4) 8.40 (d, 1 H, H-6, J 5,6 ) 8.0 Hz), 6.45 (d,
1 H, H-1′, J 1′,2′ ) 6.0 Hz), 6.23 (d, 1 H, H-5, J 5,6 ) 8.0 Hz), 4.68
(dd, 1 H, H-3′, J 2′,3′ ) 6.2, J 3′,4′ ) 3.4 Hz), 4.30 (dd, 1 H, H-2′,
J 1′,2′ ) 6.0, J 2′,3′ ) 6.2 Hz), 4.23 (ddd, 1 H, H-4′, J 3′,4′ ) 3.4,
J 4′,5′a ) 2.6, J 4′,5′b ) 2.8 Hz), 3.88 (dd, 1 H, H-5′a, J 4′,5′b ) 2.6,
J gem ) 12.3 Hz), 3.75 (dd, 1 H, H-5′b, J 4′,5′b ) 2.8, J gem ) 12.3
Hz). Anal. (C9H14N4O6‚2HCl) C, H, N.
2,2′-O-An h yd r o-1-[5′-O-(4,4′-d im et h oxyt r it yl)-â-D-a r a -
bin ofu r a n osyl]u r a cil (1b). A mixture of 2,2′-O-anhydrou-
ridine (11.3 g, 50.0 mmol) and DMTrCl (19.5 g, 57.6 mmol) in
pyridine (450 mL) was stirred at room temperature for 12 h
under argon atmosphere. The solvent was removed in vacuo,
and the residue was dissolved in AcOEt (500 mL), washed with
H2O (100 mL × 2) and brine (100 mL), dried (Na2SO4), and
concentrated in vacuo. The residue was purified by silica gel
column chromatography (CHCl3:MeOH ) 8:1) to give 1b (25.1
g, 95% as a white foam): 1H NMR (CDCl3) 7.32-6.74 (m, 14
H, H-6, Ph), 6.14 (d, 1 H, H-1′, J 1′,2′ ) 5.8 Hz), 5.95 (d, 1 H,
J 5,6 ) 7.4 Hz), 5.27 (dd, 1 H, H-2′, J 1′,2′ ) 5.6, J 2′,3′ ) 5.6 Hz),
5.05 (d, 1 H, 3′-OH, J 3′,OH ) 4.0 Hz), 4.47 (m, 1 H, H-4′), 4.38
(m, 1 H, H-3′), 3.75 (s, 6 H, OMe), 3.08 (dd, 1 H, H-5′a, J 4′,5′a
) 5.1, J gem ) 10.4 Hz), 2.96 (dd, 1 H, H-5′b, J 4′,5′b ) 7.0, J gem
) 10.3 Hz).
(dd, 1 H, H-3, J 2′,3′ ) 5.4, J 3′,4′ ) 3.0 Hz), 3.95 (ddd, 1 H, H-4′,
J 3′,4′ ) 3.0, J 4′,5′a ) 2.7, J 4′,5′b ) 2.6 Hz), 3.70 (s, 6 H, OMe),
3.62 (ddd, 1 H, H-2′, J 1′,2′ ) 6.8, J 2′,NH ) 9.2, J 2′,3′ ) 5.4 Hz),
3.43 (s, 3 H, 2′-NOMe), 3.38 (dd, 1 H, H-5′a, J 4′,5′a ) 2.7, J gem
) 10.1 Hz), 3.26 (dd, 1 H, H-5′b, J 4′,5′b ) 2.6, J gem ) 10.1 Hz),
0.82 (s, 9 H, t-Bu), 0.00, -0.02 (each s, each 3 H, Me).
2′-(N-Ben zyloxya m in o)-3′-O-(ter t-bu tyld im eth ylsilyl)-
2′-deoxy-5′-O-(4,4′-dim eth oxytr ityl)cytidin e (17). This com-
pound was prepared as described for the synthesis of 16. From
13 (2.50 g, 3.26 mmol), 17 (2.19 g, 88% as a white foam) was
obtained: LRMS (FAB) m/z 765 (MH+, 1%); HRMS (FAB) calcd
for C43H53N4O7Si 765.3683, found 765.3686; 1H NMR (CDCl3)
7.86 (d, 1 H, H-6, J 5,6 ) 7.8 Hz), 7.39-6.81 (m, 18 H, Ph), 6.19-
6.15 (m, 2 H, H-1′, 2′-NH), 5.34 (d, 1 H, H-6, J 5,6 ) 7.8 Hz),
4.76, 4.68 (each d, each 1 H, benzylic, each J ) 11.7 Hz), 4.38
(dd, 1 H, H-3′, J 2′,3′ ) 4.9, J 3′,4′ ) 4.9 Hz), 4.07 (m, 1 H, H-2′),
3.79 (s, 6 H, OMe), 3.59-3.52 (m, 2 H, H-4′, H-5′a), 3.25 (dd,
1 H, H-5′b, J 4′,5′b ) 2.9, J gem ) 10.7 Hz), 0.80 (s, 9 H, t-Bu),
0.01, -0.09 (each s, each 3 H, Me).
3′-O -(t er t -B u t y ld im e t h y ls ily l)-2′-d e o x y -5′-O -(4,4′-
dim eth oxytr ityl)-2′-(N-m eth oxyam in o)cytidin e (18). This
compound was prepared as described for the synthesis of 16.
From 14 (740 mg, 1.07 mmol), 18 (567 mg, 77% as a white
foam) was obtained: LRMS (FAB) m/z 689 (MH+, 0.2%);
HRMS (FAB) calcd for C37H49N4O7Si 689.3370, found 689.3367;
1H NMR (CDCl3) 7.91 (d, 1 H, H-6, J 5,6 ) 7.0 Hz), 7.36-6.78
(m, 13 H, Ph), 6.10-6.08 (m, 2 H, H-1′, 2′-NH), 5.31 (d, 1 H,
H-5, J 5,6 ) 7.0 Hz), 4.37 (m, 1 H, H-3′), 4.03 (m, 1 H, H-2′),
3.75 (s, 6 H, OMe), 3.56 (m 1 H, H-4′), 3.51 (m, 1 H, H-5′),
3.49 (s, 3 H, 2′-NOMe), 3.24 (dd, 1 H, H-5′a, J 4′,5′a ) 2.8, J gem
) 12.3 Hz), 0.78 (s, 9 H, t-Bu), 0.00, -0.01 (each s, each 3 H,
Me).
2′-(N-Ben zyloxya m in o)-2′-d eoxy-5′-O-(4,4′-d im et h ox-
ytr ityl)cytid in e (20). A mixture of 17 (2.00 g, 2.62 mmol)
and TBAF (1 M in THF, 2.88 mL, 2.88 mmol) in THF (25 mL)
was stirred at room temperature for 3 h. The solvent was
removed in vacuo, and the residue was dissolved in AcOEt (150
mL), washed with H2O (50 mL × 5) and brine (50 mL), dried
(Na2SO4), and concentrated in vacuo. The residue was purified
by silica gel column chromatography (CHCl3:MeOH ) 15:1)
to give 20 (1.70 g, quantitative as a white foam): LRMS (FAB)
m/z 651 (MH+, 1%); HRMS (FAB) calcd for C37H39N4O7
651.2818, found 651.2817; 1H NMR (CDCl3) 7.81 (d, 1 H, H-6,
J 5,6 ) 7.8 Hz), 7.38-6.81 (m, 18 H, Ph), 7.05 (br s, 1 H, 2′-
NH), 5.93 (d, 1 H, H-1′, J 1′,2′ ) 5.9 Hz), 5.43 (d, 1 H, H-5, J 5,6
) 7.8 Hz), 4.75, 4.69 (each d, each 1 H, benzylic, each J )
11.7 Hz), 4.33 (m, 1 H, H-3′), 4.17 (m, 1 H, H-2′), 3.79 (s, 6 H,
OMe), 3.67 (br s, 1 H, 3′-OH), 3.48 (m, 1 H, H-4′), 3.41 (dd,
1H, H-5′a, J 4′,5′a ) 2.0, J gem ) 10.7 Hz), 3.28 (dd, 1 H, H-5′b,
J 4′,5′b ) 4.9, J gem ) 10.7 Hz).
2′-(N-Ben zyloxya m in o)-2′-N,3′-O-ca r bon yl-2′-d eoxy-5′-
O-(4,4′-d im eth oxytr ityl)u r id in e (6). Compound 6 was pre-
pared as described for the synthesis of 4 (method B). From
1b (5.29 g, 10.0 mmol), 6 (4.89 g, 72% as a white foam) was
obtained: 1H NMR (CDCl3) 9.03 (br s, 1 H, 3-NH), 7.44-6.78
(m, 19 H, H-6, Ph), 5.44 (d, 1 H, H-1′, J 1′,2′ ) 8.0 Hz), 5.08-
5.02 (m, 4 H, H-5, H-3′, benzylic), 4.31 (dd, 1 H, H-2′, J 1′,2′
)
8.1, J 2′,3′ ) 1.7 Hz), 4.18 (dd, 1 H, H-4′, J 3′,4′ ) 9.4, J 4′,5′ ) 4.7
Hz), 3.78 (s, 6 H, OMe), 3.42 (dd, 1 H, H-5′a, J 4′,5′a ) 5.2, J gem
) 10.5 Hz), 3.38 (dd, 1 H, H-5′b, J 4′,5′b ) 4.1, J gem ) 10.5 Hz).
2′-N,3′-O-Ca r bon yl-2′-d eoxy-5′-O-(4,4′-d im eth oxytr ityl)-
2′-(N-m eth oxya m in o)u r id in e (7). Compound 7 was pre-
pared as described for the synthesis of 4 (method B). From
1b (1.06 g, 2.01 mmol), 7 (924 mg, 77% as a white foam) was
obtained: 1H NMR (CDCl3) 8.76 (br s, 1 H, 3-NH), 7.52 (d, 1
H, H-6, J 5,6 ) 8.1 Hz), 7.37-6.82 (m, 13 H, Ph), 6.06 (d, 1 H,
H-1′, J 1′,2′ ) 1.3 Hz), 5.50 (d, 1 H, H-5, J 5,6 ) 8.1 Hz), 5.32 (dd,
1 H, H-3′, J 2′,3′ ) 8.3, J 3′,4′ ) 5.7 Hz), 4.53 (dd, 1 H, H-2′, J 1′,2′
) 1.3, J 2′,3′ ) 8.3 Hz), 4.30 (ddd, 1 H, H-4′, J 3′,4′ ) 5.7, J 4′,5′a
)
3.4, J 4′,5′b ) 4.4 Hz), 3.96 (s, 3 H, 2′-NOMe), 3.79 (s, 6 H, OMe),
3.55 (dd, 1 H, H-5′a, J 4′,5′a ) 3.4, J gem ) 10.7 Hz), 3.51 (dd, 1
H, H-5′b, J 4′,5′b ) 4.4, J gem ) 10.7 Hz).
2′-(N-Ben zyloxya m in o)-3′-O-(ter t-bu tyld im eth ylsilyl)-
2′-d eoxy-5′-O-(4,4′-d im et h oxyt r it yl)u r id in e (13). Com-
pound 13 was prepared as described for the synthesis of 10.
From 6 (2.71 g, 4.00 mmol), 13 (2.66 g, 87% as a white foam)
was obtained: LRMS (FAB) m/z 766 (MH+, 3%); HRMS (FAB)
calcd for C43H52N3O8Si 766.3523, found 766.3535; 1H NMR
(CDCl3) 8.30 (br s, 1 H, 3-NH), 7.60 (d, 1 H, H-6, J 5,6 ) 8.2
Hz), 7.33-6.78 (m, 18 H, Ph), 6.05 (d, 1 H, 2′-NH, J 2′,NH ) 9.4
Hz), 5.90 (d, 1 H, H-1′, J 1′,2′ ) 7.1 Hz), 5.31 (dd, 1 H, H-5, J )
2.0, 8.1 Hz), 4.64, 4.61 (each d, each 1 H, benzylic, each J )
11.7 Hz), 4.32 (dd, 1 H, H-3′, J 2′,3′ ) 5.3, J 3′,4′ ) 2.7 Hz), 3.97
(m, 1 H, H-4′), 3.75 (s, 6 H, OMe), 3.57 (m, 1 H, H-2′), 3.43
(dd, 1 H, H-5′a, J 4′,5′a ) 2.8, J gem ) 10.9 Hz), 3.27 (dd, 1 H,
H-5′b, J 4′,5′b ) 2.6, J gem ) 10.9 Hz), 0.79 (s, 9 H, t-Bu), -0.04,
-0.09 (each s, each 3 H, Me).
2′-Deoxy-5′-O-(4,4′-d im eth oxytr ityl)-2′-(N-m eth oxya m i-
n o)cytid in e (21). This compound was prepared as described
for the synthesis of 20. From 18 (527 mg, 0.764 mmol), 21
(419 mg, 95% as a white foam) was obtained: LRMS (FAB)
m/z 575 (MH+, 2%); HRMS (FAB) calcd for C31H35N4O7
575.2505, found 575.2510; 1H NMR (CDCl3) 7.85 (d, 1 H, H-6,
J 5,6 ) 7.1 Hz), 7.39-6.84 (m, 13 H, Ph), 7.01 (s, 1 H, 2′-NH),
5.93 (d, 1 H, H-1′, J 1′,2′ ) 5.8 Hz), 5.44 (d, 1 H, H-5, J 5,6 ) 7.1
Hz), 4.35 (m, 1 H, H-3′), 4.32 (m, 1 H, H-2′), 3.92 (br s, 1 H,
3′-OH), 3.80 (s, 6 H, OMe), 3.66 (m, 1 H, H-4′), 3.58 (s, 3 H,
2′-NOMe), 3.45 (dd, 1 H, H-5′a, J 4′,5′a ) 2.6, J gem ) 10.7 Hz),
3.35 (dd, 1 H, H-5′b, J 4′,5′b ) 4.2, J gem ) 10.7 Hz).
2′-(N-Ben zyloxya m in o)-2′-d eoxycytid in e Dih yd r och lo-
r id e (22). A mixture of 20 (1.60 g, 2.46 mmol) in concentrated
HCl (2 mL) and EtOH (18 mL) was stirred at room tempera-
ture for 10 min. The solvent was removed in vacuo, and the
residue was dissolved in H2O (100 mL), washed with CHCl3
(30 mL × 5), and concentrated in vacuo to give 22 (840 mg,
98% as a white crystalline solid): mp 210 °C dec; LRMS (FAB)
m/z 349 (MH+, 49%); HRMS (FAB) calcd for C16H21N4O5
3′-O -(t er t -B u t y ld im e t h y ls ily l)-2′-d e o x y -5′-O -(4,4′-
dim eth oxytr ityl)-2′-(N-m eth oxyam in o)u r idin e (14). Com-
pound 14 was prepared as described for the synthesis of 10.
From 7 (850 mg, 1.41 mmol), 14 (828 mg, 85% as a white foam)
was obtained: LRMS m/z 690 (MH+, 1%); HRMS calcd for
1
1
C
37H48N3O8 690.3210, found 690.3192; H NMR (CDCl3) 8.08
349.1510, found 349.1524; H NMR (MeOH-d4) 8.32 (d, 1 H,
(br s, 1 H, 3-NH), 7.69 (d, 1 H, H-6, J 5,6 ) 8.1 Hz), 7.29-6.73
(m, 13 H, Ph), 5.96 (d, 1 H, 2′-NH, J 2′,NH ) 9.2 Hz), 5.88 (d, 1
H, H-1′, J 1′,2′ ) 6.8 Hz), 5.27 (d, 1 H, H-5, J 5,6 ) 8.1 Hz), 4.35
H-6, J 5,6 ) 7.9 Hz), 7.40 (s, 5 H, Ph), 6.47 (d, 1 H, H-1′, J 1′,2′ )
7.0 Hz), 6.13 (d, 1 H, H-6, J 5,6 ) 7.9 Hz), 5.12, 5.07 (each d,
each 1 H, benzylic, each J ) 9.2 Hz), 4.64 (dd, 1 H, H-3′, J 2′,3′