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excluding spontaneous, non-enzymatic side reactions (Fig-
ure S3a,b–8a,b,S9). To ensure that the observed enzymatic
conversion was not caused by trace amounts of another
protein that was purified along with AmbDH3, we generated
a specific mutant in which the active site histidine was
replaced with an alanine residue. No conversion was obtained
if 19 or 20 were incubated with this mutant, thus showing that
AmbDH3 was indeed responsible for dehydration (Fig-
ure S10). Finally, we aimed to show that the cyclization
activity of AmbDH3 is an intrinsic feature of the domain and
not just an artifact from applying this particular kind of
substrate. Therefore, we incubated the competent substrate
19 with the recombinant domain BorDH3 from the borrelidin
PKS. We had shown before that this domain accepts 2-d,3-d-
configured precursors and transforms them stereoselectively
into E-configured enoates with broad substrate specificity.[9a,b]
BorDH3 performed the expected dehydration to the E-
configured enoate 20, but no further cyclization to tetrahy-
drofuran rings like 21 or 22 was observed (Figure S11).
In order to unambiguously prove the configurational
assignment of the products and furthermore explore the
potential of AmbDH3 for synthetic purposes, we repeated all
of the assays with substrates 15, 16, 19, and 20 on a semi-
preparative scale (> 8 mg substrate in each case) and
analyzed the outcome by NMR spectroscopy (Figure 2 and
Figure S12–15). In all cases, we observed similar results to the
assays analyzed by HPLC–MS. AmbDH3 formed products 17
and 21 from substrates 16 and 20, respectively, with con-
versions of 18 and 87% (determined from the NMR spectra).
Incubation of AmbDH3 with 8.0 mg of the precursor 20,
followed by extractive workup gave virtually pure product 21.
This result is a promising starting point for the further
development of AmbDH3 as a useful chemoenzymatic tool
for the stereoselective synthesis of tetrahydropyran rings.
Known PS domains show relevant protein sequence
homology to DH domains, but fall into a distinct phylogenetic
clade.[2b] Furthermore, the DH-characteristic active-site motif
His-Ser-Asp is mutated to His-Ser-His/Asn, in agreement
with the fact that an acidic residue located close to C-3 of the
a,b-unsaturated PS precursor would be counterproductive for
the proposed conjugate addition mechanism. We aligned the
AmbDH3 amino acid sequence against a collection of PS
domains and DH domains from both cis- and trans-AT PKSs
and found that AmbDH3 bears the DH-characteristic His-
Ser-Asp active-site motif (Figure S19). Phylogenetic analysis
also revealed that AmbDH3 falls into a clade with typical DH
domains from cis-AT PKS systems (Figure S20).
Figure 1. a) Structures of the synthetic substrate and product surro-
gates 14–22 that were applied in the assays. HPLC–MS analyses are
shown for the AmbDH3 overnight incubations with 15 (b) and 16 (d),
as well as with compounds 19 (e) and 20 (g). The individual traces for
the synthetic reference compounds 15–22 are combined in panels (c)
and (f) for clarity (for unprocessed data, see Figure S5–9).
the nature of E-configured olefin 16 as a competent inter-
mediate, we also individually incubated this compound with
the AmbDH3 domain. We observed the formation of only
one product, which also co-eluted with the 2d,3D-configured
pyran 17 (Figure 1d and Figure S5). Usually, DH-catalyzed
reactions exist in an equilibrium between the hydrated and
dehydrated forms. Interestingly, in our case no 3-hydroxy
thioester like 15 was obtained, thus suggesting that the
position of the equilibrium was located far on the side of the
unsaturated (16) and cyclized (17) forms.[9]
The presence of detectable quantities of starting material
15, intermediate 16, and product 17 (amounts decreasing in
this order) following long-term incubation of AmbDH3 with
compound 15 points towards low specificity of the domain for
the applied substrate, particularly in the cyclization step. By
contrast, incubation of 2-d,3-d,6-d,7-d-configured compound
19 with AmbDH3 gave only minor amounts of the starting
material 19 and the a,b-unsaturated intermediate 20, but high
quantities of tetrahydropyran 21 (Figure 1e,f and Figure S7).
Incubation of intermediate 20 gave nearly complete con-
version into compound 21 and no rehydration to 19 (Fig-
ure 1g and Figure S8). On the basis of the differences in
conversion, we concluded that the natural intermediates of
the pathway must be 2-d,6-d-7, (2E)-6-d-8, 2-d,6-d-9 and
8-d-12 (Scheme 2).
In summary, we describe the unprecedented discovery of
a PKS domain that shows two catalytic activities: as
a dehydratase and as a cyclase that performs oxa-conjugate
1,4-addition. Our work is the first characterization of a pyran-
forming cyclase from a cis-AT PKS system and the first report
of a PKS domain with this kind of dual activity.[2b] Stereose-
lective synthesis of surrogate substrates allowed us to inter-
rogate the AmbDH3 domain with realistic precursor, inter-
mediate, and product analogues. As a result, we were able to
show that both sub-steps naturally proceed from 2-d,6-d-7
with high stereoselectivity, thereby leading to the intermedi-
ate (2E),6-d-8 and finally to the tetrahydropyran product
To definitely assign the cyclase activity to AmbDH3, we
performed a series of control experiments. Enzyme-free
overnight incubations of the synthetic surrogates 14–16 and
19–22 under assay conditions showed no conversion, thus
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Angew. Chem. Int. Ed. 2014, 53, 14240 –14244