DFT Pharmacophore as a Vector for Hydroxamates
J ournal of Medicinal Chemistry, 1999, Vol. 42, No. 15 2885
MA). Nalgene metabolic cages, rat jackets, and fluid swivels
were obtained from Harvard Bioscience (South Natick, MA).
Intramedic polyethylene tubing PE 50 was obtained from
Fisher Scientific (Pittsburgh, PA). Cebus apella monkeys were
purchased from World Wide Primates (Miami, FL). Ultrapure
salts were obtained from J ohnson Matthey Electronics (Roys-
ton, U.K.). Imferon, an iron dextran solution, was obtained
from Fisons (Bedford, MA).
was purified by silica gel flash column chromatography using
24% EtOAc/petroleum ether providing 13.16 g (73%) of 7 as
an oil: NMR δ 1.49 (s, 18 H), 3.57-3.64 (m, 12 H), 4.84 (s, 4
H), 7.30-7.42 (m, 10 H). Anal. (C30H44N2O8) C, H, N.
N1,N8-Bis(ter t-b u t oxyca r b on yl)-N1,N8-d ih yd r oxy-3,6-
d ioxa -1,8-octa n ed ia m in e (8). Degassed CH3OH (400 mL)
was added to 7 (10.2 g, 18.1 mmol), and 10% Pd-C (1.44 g)
was carefully introduced. The mixture was stirred under H2
at 1 atm for 7.5 h. Solids were filtered using Celite, which was
washed with CH3OH (400 mL). Solvent was removed in vacuo.
Purification of the concentrate on a Sephadex LH-20 column,
eluting with 5% EtOH/toluene, produced 3.67 g (53%) of 8 as
a colorless oil: NMR δ 1.50 (s, 18 H), 3.63 (s, 4 H), 3.70 (s, 8
H), 7.70 (s, 2 H). Anal. (C16H32N2O8) C, H, N.
N1,N8-Dih yd r oxy-3,6-d ioxa -1,8-oct a n ed ia m in e Dih y-
d r och lor id e (9). Methanolic HCl (3 N, from concentrated HCl,
100 mL) was added to 8 (3.66 g, 9.62 mmol) at 0 °C, and the
reaction mixture was stirred at room temperature for 1 day.
Solvent was removed under high vacuum. The residue was
dissolved in EtOH and concentrated. Toluene was added and
removed in vacuo to give 2.34 g (96%) of 9 as a hygroscopic
white solid: NMR (D2O) δ 3.47-3.52 (m, 4 H), 3.75 (s, 4 H),
3.85-3.90 (m, 4 H). Anal. (C6H18Cl2N2O4) C, H, N.
N1,N8-Bis(ben zyloxy)-3,6-d ioxa -1,8-octa n ed ia m in e (10).
A solution of 7 (6.00 g, 10.7 mmol) in CH3OH (144 mL) and
concentrated HCl (56 mL) was stirred at room temperature
for 20 h. The mixture was concentrated to dryness, H2O (50
mL) was added to the residue, the pH was adjusted to 9 with
saturated Na2CO3, and the aqueous layer was extracted with
EtOAc (3 × 100 mL). The combined organic extracts were
washed with H2O (2 × 50 mL), and the solvent was removed
in vacuo. Silica gel flash chromatography (1:1 cyclohexane/
EtOAc) afforded 3.25 g (84%) of 10 as a colorless oil: NMR δ
3.09 (t, 4 H, J ) 5.1), 3.58 (s, 4 H), 3.60 (t, 4 H, J ) 5.1), 4.70
(s, 4 H), 5.93 (br s, 2 H), 7.26-7.37 (m, 10 H). Anal.
(C20H28N2O4) C, H, N.
N1,N8-Bis(2-a cetoxyben zoyl)-N1,N8-bis(ben zyloxy)-3,6-
d ioxa -1,8-octa n ed ia m in e (11). A solution of acetylsalicyloyl
chloride (1.10 g, 5.54 mmol) in CH2Cl2 (7 mL) was added
dropwise under Ar to a solution of 10 (0.91 g, 2.52 mmol) and
DIEA (0.72 g, 5.57 mmol) in CH2Cl2 (30 mL). The mixture was
stirred at room temperature under Ar for 4 h, and CH2Cl2 (100
mL) was added. The organic layer was washed with 10% citric
acid (3 × 30 mL), saturated NaHCO3 (3 × 30 mL), H2O (2 ×
30 mL), and brine (30 mL), and the solvent was removed in
vacuo. Silica gel flash chromatography (5% then 10% acetone
in CH2Cl2) gave 1.54 g (89%) of 11 as a colorless oil: NMR δ
2.24 (s, 6 H), 3.62 (s, 4 H), 3.71 (m, 4 H), 3.84 (br s, 4 H), 4.69
(br s, 4 H), 6.95-7.29 (m, 14 H), 7.37-7.46 (m, 4 H). Anal.
(C38H40N2O10) C, H, N.
(S)-4,5-Dih yd r o-N-h yd r oxy-2-(3-h yd r oxy-2-p yr id in yl)-
N-(p h en ylm eth yl)-4-th ia zoleca r boxa m id e (4). BOP re-
agent (6.13 g, 13.9 mmol) was added to a solution of 1 (3.16 g,
14.1 mmol) and N-benzylhydroxylamine hydrochloride (2.01
g, 12.6 mmol) in DMF (130 mL). Diisopropylethylamine (DIEA;
7.0 mL, 40 mmol) in DMF (17 mL) was added dropwise at 0
°C to the reaction solution, which was stirred as it warmed to
room temperature for 1 day. Solvents were removed under
high vacuum, and the residue was treated with 0.4 M citric
acid (200 mL) and extracted with EtOAc (3 × 100 mL). The
organic extracts were washed with 100 mL: 1:1 saturated
NaHCO3/brine (2×), H2O (3×), and brine, and solvent was
removed by rotary evaporation. Purification of the residue on
a Sephadex LH-20 column, eluting with 4% EtOH/toluene,
produced 1.72 g (41%) of 4 as a yellow solid: mp 171-173 °C;
[R]25 -16.4° (c 0.52, CH3OH). Anal. (C16H15N3O3S) C, H, N.
D
(()-4. Reaction of 1 (7.03 g, 31.4 mmol) and N-benzylhy-
droxylamine hydrochloride (4.55 g, 28.5 mmol) under the above
conditions and recrystallization from aqueous EtOH gave 4.83
g (51%) of (()-4 as light-green needles: mp 175-177 °C; [R]21
D
-0.39° (c 0.52, CH3OH); NMR (CD3OD) δ 3.47 (dd, 1 H, J )
11, 9), 3.59-3.71 (m, 1 H), 4.84 (d, 1 H, J ) 2, second N-CH2-
Ph under OH), 6.01 (t, 1 H, J ) 9), 7.26-7.42 (m, 7 H), 8.13
(t, 1 H, J ) 3).
(S,S)-N1,N8-Bis[4,5-d ih yd r o-2-(3-h yd r oxy-2-p yr id in yl)-
4-t h ia zo y l]-N 1,N 8-d ih y d r o x y -3,6-d io x a -1,8-o c t a n e d i-
a m in e (5). BOP reagent (8.59 g, 19.4 mmol) was added to a
solution of 1 (4.26 g, 19.0 mmol) and 9 (2.23 g, 8.81 mmol) in
DMF (130 mL). DIEA (9.6 mL, 55 mmol) in DMF (23 mL) was
added dropwise at 0 °C to the reaction solution, which was
stirred as it warmed to room temperature for 1 day. Solvents
were removed under high vacuum, and the residue was treated
with 0.5 M citric acid (150 mL) and brine (50 mL) and was
extracted with EtOAc (4 × 100 mL). The organic extracts were
washed with 100 mL: 1:1 saturated NaHCO3/brine (2×), H2O
(4×), and brine; solvent was removed by rotary evaporation.
Purification of the residue on a Sephadex LH-20 column,
eluting with 4% EtOH/toluene, furnished 0.59 g (11%) of 5 as
a pale-green foam: [R]22 -8.7° (c 0.28, CH3OH); NMR (CD3-
D
OD) δ 3.45-3.98 (m, 16 H), 6.00 (t, 2 H, J ) 9), 7.38 (d, 4 H,
J ) 3), 8.09-8.15 (m, 2 H). Anal. (C24H28N6O8S2) C, H, N.
N1,N8-Bis(2-h ydr oxyben zoyl)-N1,N8-dih ydr oxy-3,6-dioxa-
1,8-octa n ed ia m in e (6). To a solution of 12 (455 mg, 0.76
mmol) in CH3OH (30 mL) was added 10% Pd-C (160 mg). The
mixture was stirred under H2 (1 atm) at room temperature
for 1 h. The catalyst was filtered, and the solvent was removed
in vacuo. Purification of the residue on a Sephadex LH-20
column, eluting with 4% EtOH/toluene, followed by lyophiliza-
tion gave 254 mg (81%) of 6 as a pale-yellow oil: NMR (CD3-
OD) δ 3.57 (s, 4 H), 3.73 (m, 4 H), 3.81 (m, 4 H), 6.86 (m, 4 H),
7.27 (m, 2 H), 7.44 (m, 2 H). Anal. (C20H24N2O8) C, H, N.
N1,N8-Bis(ben zyloxy)-N1,N8-bis(ter t-bu toxyca r bon yl)-
3,6-d ioxa -1,8-octa n ed ia m in e (7). NaH (60%, 3.46 g, 86.5
mmol) was added to N-(tert-butoxycarbonyl)-O-benzylhydroxy-
lamine (15.08 g, 67.5 mmol) in DMF (160 mL) at 0 °C. The
reaction mixture was stirred for 40 min at room temperature,
and 1,2-bis(2-chloroethoxy)ethane (5.0 mL, 32 mmol) was
introduced by syringe. After the flask was heated for 21 h at
53 °C, it was cooled in ice water; the reaction was quenched
with H2O (20 mL). Solvents were removed in vacuo, and the
residue was treated with dilute brine (200 mL) and EtOAc (250
mL). The aqueous portion was further extracted with EtOAc
(2 × 100 mL). The organic extracts were washed with H2O (2
× 100 mL) and brine (100 mL). After solvent removal, the solid
N1,N8-Bis(ben zyloxy)-N1,N8-bis(2-h yd r oxyben zoyl)-3,6-
d ioxa -1,8-octa n ed ia m in e (12). Sodium methoxide (0.5 M,
18.0 mL, 9.0 mmol) was added at 0 °C to a solution of 11 (1.45
g, 2.12 mmol) in CH3OH (50 mL). The mixture was stirred at
0 °C for 1 h. A solution of concentrated HCl (0.8 mL) in EtOH
(19.2 mL) was added, and the solvent was removed in vacuo.
Water (100 mL) was added to the residue, and the aqueous
layer was extracted with Et2O (4 × 80 mL). The combined
organic extracts were washed with H2O (2 × 50 mL) and brine
(50 mL), and the solvent was removed by rotary evaporation.
Silica gel flash chromatography (5% acetone in CH2Cl2) yielded
1.15 g (91%) of 12 as a colorless oil: NMR δ 3.61 (s, 4 H), 3.73
(t, 4 H, J ) 5.3), 3.89 (t, 4 H, J ) 5.3), 4.76 (s, 4 H), 6.80 (m,
2 H), 6.95 (m, 2 H), 7.18-7.38 (m, 12 H), 7.83 (m, 2 H). Anal.
(C34H36N2O8) C, H, N.
Ca n n u la tion of Bile Du ct in Ra ts. The cannulation has
been described previously.8,11,12 Briefly, male Sprague-Dawley
rats averaging 400 g were housed in Nalgene plastic metabolic
cages during the experimental period and given free access to
water. The animals were anesthetized using sodium pento-
barbital (55 mg/kg) given ip. The bile duct was cannulated
using 22-gauge polyethylene tubing. The cannula was inserted
into the duct about 1 cm from the duodenum and tied in place.