Effect of Spermine Conjugation on Acridine
J ournal of Medicinal Chemistry, 2002, Vol. 45, No. 23 5107
7.27-7.37 (m, 5H, H-Ar). 13C NMR (68 MHz, CDCl3, mixture
of conformational isomers): δ 21.99 and 22.72 (NCH2CH2CH2-
CH2CHOH), 32.62 and 33.54 (NCH2CH2CH2CH2CHOH), 45.71
and 46.17 (NCH2), 66.85 and 67.08 (OCH2C6H5), 81.14 and
81.91 (OHCHN), 127.81, 128.02, 128.22, 128.46 and 128.59
(CH-Ar), 136.31 and 136.42 (OCH2CC5H5), 153.51 and 154.35
(CdO). MS-CI (m/z) calcd for C13H18NO3 (M + H), 236.29;
found, 236.10.
P r oced u r e for N1,N4,N9-Tr i-ter t-bu toxyca r bon ylsp er -
m in e Syn th esis (20). Compound 20 was made as previously
described;49 44%; Rf 0.38 (CH2Cl2/MeOH/NH4OH 70/10/1 and
visualized using ninhydrin). 1H NMR (400 MHz, CDCl3): δ
1.28-1.48 (m, 31H, 3(CH3)3C, H-6, H-7), 1.59-1.66 (m, 4H,
H-2, H-11), 2.74 (m, 2H, H-12), 3.00-3.45 (m, 12H, H-1, H-3,
H-5, H-8, H-10, NH2). 13C NMR (100 MHz, CDCl3): δ 25.42
and 26.02 (C-6, C-7), 28.09 and 28.93 (3(CH3)3C, C-2), 30.15
and 32.30 (C-11), 37.36 and 37.71 (C-1), 38.35 and 39.35 (C-
12), 43.54 and 44.42 (C-3, C-10), 46.43 and 46.82 (C-5, C-8),
78.96 and 79.74 ((CH3)3C), 155.52 and 156.21 (CdO).
2H, H-17), 3.16-3.64 (m, 14H, H-2, H-4, H-6, H-9, H-11, H-13,
H-15). MS-FAB (m/z) calcd for C33H66N5O8 (M + H), 660.91;
found, 660.30.
Da t a for N1,N5,N10,N14-Tet r a -ter t-b u t oxyca r b on yl-
1,5,10,14,19-p en ta a za n on a d eca n e (25). Compound 25 was
prepared from 22; colorless oil; 32%; Rf, 0.10 (c). 1H NMR (500
MHz, CDCl3): δ 1.25-1.88 (m, 48H, 4(CH3)3C, H-3, H-7, H-8,
H-12, H-16, H-17), 2.17 (br s, 2H, NH2), 2.90 (m, 2H, H-18),
3.10-3.42 (m, 14H, H-2, H-4, H-6, H-9, H-11, H-13, H-15). MS-
FAB (m/z) calcd for C34H68N5O8 (M + H), 674.94; found, 674.30.
Da t a for N1,N5,N10,N14-Tet r a -ter t-b u t oxyca r b on yl-
1,5,10,14,20-p en ta a za eicosa n e (26). Compound 26 was pre-
1
pared from 23; colorless oil; 34%; Rf 0.10. H NMR (500 MHz,
CDCl3): δ 1.24-1.85 (m, 50H, 4(CH3)3C, H-3, H-7, H-8, H-12,
H-16, H-17, H-18), 3.02-3.35 (m, 16H, H-2, H-4, H-6, H-9,
H-11, H-13, H-15, H-19), 8.13 (br s, 2H, NH2). MS-FAB (m/z)
calcd for C35H70N5O8 (M + H), 688.96; found, 688.30.
Gen er a l P r oced u r e of Acyla tion . To a solution of 24-
26 (1 equiv) in DMF (3 mL) was added acridine-9-carboxylic
acid (1 equiv). After it was dissolved, N,N′-dicyclohexylcarbo-
diimide (1.2 equiv) and then N1-hydroxybenzotriazole (cata-
lytical amount, 0.01 equiv) were added. The reaction mixture
was stirred at room temperature for 48 h. The precipitate was
then removed by filtration. The solvents were evaporated
under reduced pressure, and the residue was purified by
column chromatography in MeOH/NH4OH 95/5. TLC was
performed in CH2Cl2/MeOH 95/5 and visualized using nin-
hydrin (a). The removal of Boc groups was achieved overnight
using a 0.9 M solution of HCl gas in AcOEt. TLC was
performed in isopropylamine/MeOH/CHCl3 2/4/4 and visual-
ized using ninhydrin (b).
Da t a for N1-(Acr id in -9-ylca r b on yl)-1,5,9,14,18-p en t a -
a za octa d eca n e P en ta h yd r och lor id e (8). Boc-protected 27
was prepared from 24 (yellow oil; 64%; Rf 0.26 (a)). Deprotec-
tion gave 8 in 93% yield. Yellow solid; Rf 0.06 (b). FTIR 2300-
3700 (NH+), 1636 (CdN + CdO). 1H NMR (500 MHz, D2O):
δ 1.79-1.83 (m, 4H, H-h, H-i), 2.11 (m, 2H, H-b), 2.15-2.29
(m, 4H, H-e, H-l), 3.10-3.37 (m, 14H, H-c, H-d, H-f, H-g, H-j,
H-k, H-m), 3.83 (t, 2H, J ) 7 Hz, H-a), 7.97 (t, 2H, J ) 7 Hz,
H-3, 6), 8.27-8.31 (m, 4H, H-2, 7 and H-4, 5), 8.38 (d, 2H, J )
9 Hz, H-1, 8). 13C NMR (125 MHz, D2O): δ 23.11, 23.16 (C-e,
C-h, C-i), 24.13 (C-l), 25.88 (C-b), 36.93 (C-m), 37.83 (C-a),
44.88, 44.93, 45.03 (C-d, C-f, C-k), 46.01 (C-c), 47.23 and 47.39
(C-g, C-j), 120.62 (C-1, 8), 122.70 (C-12, 13), 126.47 (C-4, 5),
129.73 (C-3, 6), 138.07 (C-2, 7), 140.57 (C-11, 14), 150.32 (C-
9), 166.83 (CdO). HRMS (LSIMS) (m/z) calcd for C27H41N6O
(M + H), 465.3342; found, 465.3347. Anal. (C27H40N6O‚5HCl‚
3H2O) calcd: C, 46.44; H, 7.36; N, 12.04. Found: C, 45.96; H,
7.63; N, 12.06.
Da ta for N1-(Acr id in -9-ylca r bon yl)-1,6,10,15,19-p en ta -
a za n on a d eca n e P en ta h yd r och lor id e (9). Boc-protected 28
was prepared from 25 (yellow oil; 54%; Rf 0.23 (a)). Deprotec-
tion gave 9 in 96% yield. Yellow solid; Rf 0.07 (b). FTIR 2300-
3700 (NH+), 1638 (CdN + CdO). 1H NMR (500 MHz, D2O):
δ 1.80-1.85 (m, 4H, H-i, H-j), 1.91-1.96 (m, 4H, H-b, H-c),
2.10-2.20 (m, 4H, H-f, H-m), 3.10-3.23 (m, 14H, H-d, H-e,
H-g, H-h, H-k, H-l, H-n), 3.78 (m, 2H, H-a), 7.97 (t, 2H, J ) 7
Hz, H-3, 6), 8.27-8.30 (m, 4H, H-2, 7 and H-4, 5), 8.38 (d, 2H,
J ) 9 Hz, H-1, 8). 13C NMR (125 MHz, D2O): δ 23.10, 23.16
(C-f, C-i, C-j), 23.79 (C-c), 24.13 (C-m), 25.94 (C-b), 36.94 (C-
n), 40.18 (C-a), 44.86, 44.90, 44.93 (C-e, C-g, C-l), 47.40 and
47.42 (C-h, C-k), 47.78 (C-d), 120.32 (C-1, 8), 122.65 (C-12, 13),
126.54 (C-4, 5), 129.76 (C-3, 6), 138.26 (C-2, 7), 140.26 (C-11,
14), 150.91 (C-9), 166.41 (CdO). HRMS (LSIMS) (m/z) calcd
for C28H43N6O (M + H), 479.3498; found, 479.3507. Anal.
(C28H42N6O‚5HCl‚H2O) calcd: C, 49.73; H, 7.30; N, 12.43.
Found: C, 50.02; H, 7.57; N, 12.34.
Da ta for N1-(Acr id in -9-ylca r bon yl)-1,7,11,16,20-p en ta -
a za eicosa n e P en t a h yd r och lor id e (10). Boc-protected 29
was prepared from 26 (yellow oil; 67%; Rf 0.26 (a)). Deprotec-
tion gave 10 in 84% yield. Yellow solid; Rf 0.10 (b). FTIR 2300-
3700 (NH+), 1638 (CdN + CdO). 1H NMR (500 MHz, D2O):
δ 1.59 (m, 2H, H-c), 1.82-1.89 (m, 8H, H-b, H-d, H-j, H-k),
2.10-2.20 (m, 4H, H-g, H-n), 3.12-3.22 (m, 14H, H-e, H-f, H-h,
Gen er a l Meth od of Red u ctive Am in a tion . Compound
17, 18, or 19 (1 equiv) was dissolved with 20 (1.4 equiv) in
anhydrous MeOH (10 mL), and the solution was stirred on
molecular sieves 4 Å under N2 at 25 °C. Sodium cyanoboro-
hydride (1.7 equiv) and a catalytic amount of glacial acetic acid
(0.1 mL) were then added, and the reaction mixture was
stirred at 25 °C for 24 (for 17), 48 (for 18), or 72 h (for 19).
The mixture was then filtered and concentrated under reduced
pressure. The residue was then chromatographed in CH2Cl2/
MeOH/NH4OH 100/10/1. TLC was performed in CH2Cl2/
MeOH/NH4OH 100/10/1 and visualized using ninhydrin.
Da ta for N1,N5,N10-Tr i-ter t-bu toxyca r bon yl-N18-ben zyl-
oxyca r bon yl-1,5,10,14,18-p en ta a za octa d eca n e (21). Com-
1
pound 21 was prepared from 17; yellow oil; 54%; Rf 0.34. H
NMR (400 MHz, CDCl3): δ 1.44-1.45 (m, 31H, 3(CH3)3C, H-7,
H-8), 1.69 (m, 6H, H-3, H-12, H-16), 2.07 (br s, 1H, NH), 2.56-
2.69 (m, 4H, H-13, H-15), 3.13-3.48 (m, 12H, H-2, H-4, H-6,
H-9, H-11, H-17), 5.09 (s, 2H, OCH2C6H5), 7.30-7.36 (m, 5H,
H-Ar). MS-FAB (m/z) calcd for C36H64N5O8 (M + H), 694.93;
found, 694.30.
Da ta for N1,N5,N10-Tr i-ter t-bu toxyca r bon yl-N19-ben zyl-
oxyca r bon yl-1,5,10,14,19-p en ta a za n on a d eca n e (22). Com-
pound 22 was prepared from 18; colorless oil; 40%; Rf 0.36.
1H NMR (500 MHz, CDCl3): δ 1.44-2.00 (m, 40H, 3(CH3)3C,
H-3, H-7, H-8, H-12, H-16, H-17, NH), 2.56-2.89 (m, 4H, H-13,
H-15), 3.10-3.33 (m, 12H, H-2, H-4, H-6, H-9, H-11, H-18),
5.09 (s, 2H, OCH2C6H5), 7.30-7.33 (m, 5H, H-Ar). MS-FAB
(m/z) calcd for C37H66N5O8 (M + H), 708.95; found, 708.30.
Da ta for N1,N5,N10-Tr i-ter t-bu toxyca r bon yl-N20-ben zyl-
oxyca r b on yl-1,5,10,14,20-p en t a a za eicosa n e (23). Com-
1
pound 23 was prepared from 19; yellow oil; 29%; Rf 0.16. H
NMR (500 MHz, CDCl3): δ 1.23-2.06 (m, 42H, 3(CH3)3C, H-3,
H-7, H-8, H-12, H-16, H-17, H-18, NH), 2.78-2.92 (m, 4H,
H-13, H-15), 3.10-3.58 (m, 12H, H-2, H-4, H-6, H-9, H-11,
H-19), 5.09 (s, 2H, OCH2C6H5), 7.30-7.36 (m, 5H, H-Ar).
Gen er a l P r oced u r e of Tetr a Boc P en ta m in e F or m a -
tion . To a solution of 21, 22, or 23 (1 equiv) in dimethylform-
amide (DMF, 5 mL), di-tert-butyl dicarbonate (1.2 equiv)
dissolved in 1 mL of DMF was added at 0 °C under N2. The
reaction mixture was stirred at room temperature for 1 h.
Concentrated NH4OH (1 mL) was added, and the reaction
mixture was stirred for 20 min. The solvents were evaporated
under reduced pressure at 40 °C. Pearlman’s catalyst (1 equiv)
was then added to the residue dissolved in 3 mL of MeOH.
The mixture was stirred for 4 h under an atmosphere of H2 at
25 °C. The mixture was filtered, washed with MeOH, and
concentrated under reduced pressure. The residue was purified
by column chromatography in CH2Cl2/MeOH/NH4OH 100/10/
1. TLC was performed in CH2Cl2/MeOH/NH4OH 100/10/1 and
visualized using ninhydrin.
Da t a for N1,N5,N10,N14-Tet r a -ter t-b u t oxyca r b on yl-
1,5,10,14,18-p en ta a za octa d eca n e (24). Compound 24 was
prepared from 21; colorless oil; 63%; Rf 0.10. 1H NMR (400
MHz, CDCl3): 1.44-1.45 (m, 40H, 4(CH3)3C, H-7, H-8), 1.66-
1.75 (m, 6H, H-3, H-12, H-16), 1.99 (br s, 2H, NH2), 2.85 (m,