Organic Letters
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The characteristic aspects of the UV-melting profiles for the
S−S dimer gave steeper increase in the absorbance against
temperature than the monomer, suggesting positive coopera-
tivity for the binding of four naphthyridine units in two NCD
moieties. TAs for the monomer were almost the same as that
for NCD and NCT8 of 0.013, suggesting the mode of the
binding is not affected by the modification as we speculated
from stoichiometry analysis. In contrast, those for S−S dimers
were 0.027 (n = 4), 0.019 (n = 5), and 0.027 °C−1 (n = 6),
showing about 1.5−2.1 times larger TA than that for NCD,
NCT8, and monomers. Z-NCTS showed the largest TA value
(0.031 °C−1) among molecules we investigated. These data
strongly supported that the dimerization of NCD−Cn−SH is
positively effective for the binding of four naphthyridine units
to the four guanine bases in the CGG/CGG DNA.
In conclusion, NCD−Cn−SH showed superior hydro-
philicity to NCT8 and Z-NCTS and efficient binding to the
CGG/CGG DNA upon spontaneous dimerization under
aerobic conditions. The oxidative dimerization was selectively
accelerated in the presence of the CGG repeat DNA. While
these results would be one of marked examples of DNA−
template organic synthesis,29−31 much more important aspects
of NCD−Cn−SH were disclosed by these studies. Thus, the
monomeric NCD−Cn−SH may have a chance to accumulate
on the CGG repeat DNA by the accelerated oxidation to the
S−S dimer leading to the formation of the complex with higher
thermal stability. These scenario would be attractive for
chemical biology studies on the Fragile X syndrome and
related diseases caused by CGG repeat expansion not only in
vitro but also in more diseases relevant cell models.
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ASSOCIATED CONTENT
* Supporting Information
■
S
The Supporting Information is available free of charge on the
Experimental section and additional figures, schemes, and
(21) Barasoain, M.; Barrenetxea, G.; Huerta, I.; Tel
Arrieta, I. Genes 2016, 7, 1−18.
́
ez, M.; Criado, B.;
AUTHOR INFORMATION
(22) Verkerk, A. J. M. H.; Pieretti, M.; Sutcliffe, J. S.; Fu, Y. H.; Kuhl,
D. P. A.; Pizzuti, A.; Reiner, O.; Richards, S.; Victoria, M. F.; Zhang, F.;
Eussen, B. E.; van Ommen, G. J. B.; Blonden, L. A. J.; Riggins, G. J.;
Chastain, J. L.; Kunst, C. B.; Galjaard, H.; Thomas Caskey, C.; Nelson,
D. L.; Oostra, B. A.; Warran, S. T. Cell 1991, 65, 905−914.
(23) Lipinski, C. A. J. Pharmacol. Toxicol. Methods 2000, 44, 235−
249.
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Corresponding Author
ORCID
Notes
(24) Dohta, Y.; Yamashita, T.; Horiike, S.; Nakamura, T.; Fukami, T.
Anal. Chem. 2007, 79, 8312−8315.
The authors declare no competing financial interest.
(25) Dohno, C.; Kohyama, I.; Kimura, M.; Hagihara, M.; Nakatani,
K. Angew. Chem., Int. Ed. 2013, 52, 9976−9979.
ACKNOWLEDGMENTS
■
(26) Matsumoto, S.; Hong, C.; Otabe, T.; Murata, A.; Nakatani, K.
Bioorg. Med. Chem. Lett. 2013, 23, 3539−3541.
This work was supported by JSPS KAKENHI Grant-in-Aid for
Specially Promoted Research (26000007) to K.N. and by
Young Scientist (B) (15K17885, 17K14516) to T.Y., performed
under the Research Program of “Dynamic Alliance for Open
Innovation Bridging Human, Environment and Materials” in
“Network Joint Research Center for Materials and Devices”.
The authors would like to thank Dr. Chikara Dohno and Mr.
Yihuan Lu for providing Z-NCTS.
(27) Pearson, D. A.; Blanchette, M.; Baker, M. L.; Guindon, C. A.
Tetrahedron Lett. 1989, 30, 2739−2742.
̂ ̆
(28) Tache, F.; Nascu-Briciu, R. D.; Sarbu, C.; Micale, F.;
Medvedovici, A. J. Pharm. Biomed. Anal. 2012, 57, 82−93.
(29) Sando, S.; Kool, E. T. J. Am. Chem. Soc. 2002, 124, 2096−2097.
(30) Li, X.; Liu, D. R. Angew. Chem., Int. Ed. 2004, 43, 4848−4870.
(31) Rzuczek, S. G.; Colgan, L. A.; Nakai, Y.; Cameron, M. D.;
Furling, D.; Yasuda, R.; Disney, M. D. Nat. Chem. Biol. 2016, 13, 188−
193.
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