Synthesis of Novel Nucleo-β-Amino Acids and Nucleobase-Functionalized β-Peptides
FULL PAPER
to afford 3 (4.05 g, 79%) as a colorless solid. M.p. 81Ϫ83 °C. Rf ϭ
0.19 (n-hexane/ethyl acetate, 4:1). IR (solid): ν˜ ϭ 3365, 2977, 1727,
1678, 1514, 1440, 1274, 1247, 1219, 1161, 1123, 1024, 732, 683
cmϪ1. 1H NMR (300 MHz, CDCl3, 25 °C): δ ϭ 1.43 (s, 9 H, tBu),
1.97Ϫ2.07 [m, 1 H, C(γ)-H], 2.07Ϫ2.24 [m, 1 H, C(γ)-H], 2.64 [d,
171.2 (CH2CO2Bzl) ppm. MS (ESI): m/z (%) ϭ 573.4 (82) [M ϩ
Na]ϩ, 1123.3 (100) [2 M ϩ Na]ϩ, 1673.4 (13) [3 M ϩ Na]ϩ.
C29H34N4O7 (550.2): calcd. 550.2428; found 550.2427 (HRMS).
Benzyl (R)-β-(tert-Butoxycarbonylamino)-δ-[N6-(benzyloxycarbonyl)-
adenin-9-yl]pentanoate (9):
A mixture of bromide 3 (2.56 g,
3
3JH,H ϭ 5 Hz, 2 H, C(α)-H], 3.40 [t, JH,H ϭ 7 Hz, 2 H, C(δ)-H],
6.63 mmol), (N6-benzyloxycarbonyl)adenine (5.00 g, 18.6 mmol),
K2CO3 (2.57 g, 18.6 mmol), and TBAI (254 mg, 688 µmol) in dry
DMF (82 mL) was stirred under nitrogen at room temperature for
46 h. Then, the solvent was removed under reduced pressure, water
(200 mL) was added, and the crude compound was extracted with
ethyl acetate (6 ϫ 100 mL). The combined organic phases were
dried (MgSO4) and the solvent was removed under reduced press-
ure. Purification by column chromatography (silica gel, ethyl acet-
ate) afforded 9 (2.13 g, 56%) as a colorless solid. M.p. 75Ϫ79 °C.
Rf ϭ 0.59 (ethyl acetate/methanol, 9:1). IR (solid): ν˜ ϭ 3340, 2979,
1740, 1698, 1616, 1581, 1455, 1243, 1155, 987, 734 cmϪ1. 1H NMR
(300 MHz, CDCl3, 25 °C): δ ϭ 1.44 (s, 9 H, tBu), 2.03Ϫ2.12 [m, 2
H, C(γ)-H], 2.59 [m, 2 H, C(α)-H], 3.87Ϫ4.00 [m, 1 H, C(β)-H],
4.10Ϫ4.19 [m, 1 H, C(δ)-H], 4.24Ϫ4.33 [m, 1 H, C(δ)-H], 5.08 (s,
2 H, CH2Ph), 5.28 (s, 2 H, CH2Ph), 5.31 (s, br., 1 H, NHBoc),
7.26Ϫ7.40 (m, 10 H, 2 Ph), 8.03 [s, br., 1 H, C(2)-H, C(8)-H], 8.74
[s, 1 H, C(2)-H, C(8)-H], 9.30 (s, br., 1 H, NHCO2Bzl) ppm. 13C
NMR (75 MHz, CDCl3, 25 °C): δ ϭ 28.1 [C(CH3)3], 34.3 [C(γ)],
38.9 [C(α)], 41.1 [C(δ)], 44.8 [C(β)], 66.4 (CH2Ph), 67.4 (CH2Ph),
79.7 [C(CH3)3], 121.8 [C(5)], 128.1Ϫ128.4 (Ph), 135.1 (Cipso, Ph),
135.3 (Cipso, Ph), 143.3 [C(8)], 149.3 [C(6)], 151.0, 151.2, 152.4
[C(2)], 155.3 [C(4)], 170.9 (CH2CO2Bzl) ppm. MS (ESI): m/z (%) ϭ
597.3 (100) [M ϩ Na]ϩ, 1171.6 (43) [2 M ϩ Na]ϩ. C30H34N6O6
(575.3): calcd. 575.2618; found 575.2635 (HRMS).
4.07Ϫ4.09 [m, 1 H, C(β)-H], 5.05 (s, br., 1 H, NH), 5.13 (s, 2 H,
CH2Ph), 7.33Ϫ7.39 (m, 5 H, Ph) ppm. 13C NMR (75 MHz, CDCl3,
25 °C): δ ϭ 28.1 [C(CH3)3], 29.3 [C(δ)], 37.2 [C(γ)], 38.4 [C(α)],
46.4 [C(β)], 66.4 (CH2Ph), 79.8 [C(CH3)3], 128.1Ϫ128.4 (Ph), 135.8
(Cipso, Ph), 155.7 (NHCO2), 171.3 (CO2Bzl) ppm. MS (ESI): m/z
(%) ϭ 408.4/410.1 (100/98) [M ϩ Na]ϩ. C17H24BrNO4·Na (408.1):
calcd. 408.0786; found 408.0789 (HRMS).
Benzyl (R)-β-(tert-Butoxycarbonylamino)-δ-hydroxypentanoate (7):
A 1 solution of borane in THF (51.6 mL, 51.6 mmol) was added
dropwise over 40 min to a solution of Boc--β-homoaspartic acid
5-benzyl ester (6) (2.90 g, 8.60 mmol) in dry THF (10 mL) at Ϫ5
°C under nitrogen and stirring continued at Ϫ5 °C for 5 h. Then,
the reaction was quenched by slowly adding methanol/acetic acid
(9:1, 20 mL). The solvents were removed under reduced pressure.
The residue was dissolved in ethyl acetate (300 mL) and washed
with 1 aq. HCl (2 ϫ 150 mL), sat. NaHCO3 (2 ϫ 150 mL), and
brine (1 ϫ 150 mL). The organic phase was dried (MgSO4), and
the solvent was removed under reduced pressure. The crude com-
pound was purified by column chromatography (silica gel, n-hex-
ane/ethyl acetate, 1:1) to afford 7 (2.03 g, 73%) as a colorless solid.
Rf ϭ 0.17 (n-hexane/ethyl acetate, 1:1). IR (solid): ν˜ ϭ 3390, 3335,
2986, 1728, 1668, 1517, 1449, 1274, 1245, 1219, 1161, 1123, 1027,
1
729 cmϪ1. H NMR (300 MHz, CDCl3, 25 °C): δ ϭ 1.41 (s, 9 H,
tBu), 1.48Ϫ1.60 [m, 1 H, C(γ)-H], 1.72Ϫ1.81 [m, 1 H, C(γ)-H],
Benzyl (R)-β-(tert-Butoxycarbonylamino)-δ-[N3-(benzoyl)thymin-1-
yl]pentanoate (10): A mixture of bromide 3 (2.10 g, 5.44 mmol), 3-
benzoylthymine (2.77 g, 12.0 mmol), K2CO3 (1.66 g, 12.0 mmol),
and TBAI (201 mg, 544 µmol) in dry DMF (66 mL) under nitrogen
was stirred at room temperature for 70 h. The solvent was removed
under reduced pressure, water (200 mL) was added, and the crude
compound was extracted with ethyl acetate (6 ϫ 100 mL). The
combined organic phases were dried (MgSO4) and the solvent was
removed under reduced pressure. Compound 10 was obtained as a
colorless solid (2.69 g, 92%) after column chromatography (silica
gel, n-hexane/ethyl acetate, 2:1, to ethyl acetate, 100% gradient).
M.p. 125Ϫ126 °C. Rf ϭ 0.67 (ethyl acetate/methanol, 9:1). IR
(solid): ν˜ ϭ 3337, 2980, 2931, 1733, 1697, 1673, 1640, 1520, 1437,
2.55 [dd, 2JH,H ϭ 16, 3JH,H ϭ 5 Hz, 1 H, C(α)-H], 2.67 [dd, 2JH,H ϭ
3
16, JH,H ϭ 5 Hz, 1 H, C(α)-H], 3.47 (s, br., 1 H, OH), 3.58Ϫ3.67
[m, 2 H, C(δ)-H], 4.02Ϫ4.04 [m, 1 H, C(β)-H], 5.15 (s, 2 H,
CH2Ph), 5.40 (s, br., 1 H, NH), 7.28Ϫ7.37 (m, 5 H, Ph) ppm. 13C
NMR (75 MHz, CDCl3, 25 °C): δ ϭ 28.1 [C(CH3)3], 37.3 [C(γ)],
38.9 [C(α)], 43.9 [C(β)], 58.4 [C(δ)], 66.3 (CH2Ph), 79.7 [C(CH3)3],
128.2Ϫ128.4 (Ph), 135.3 (Cipso
, Ph), 156.5 (NHCO2), 171.4
(CO2Bzl) ppm. MS (ESI): m/z (%) ϭ 346.1 (20) [M ϩ Na]ϩ, 669.2
(100) [2 M ϩ Na]ϩ. C17H25NO5·Na (346.2): calcd. 346.1630; found
346.1636 (HRMS).
Benzyl (R)-β-(tert-Butoxycarbonylamino)-δ-[N4-(benzyloxycarbonyl)-
cytosin-1-yl]pentanoate (8): A suspension of bromide 3 (1.16 g,
3.00 mmol), N4-(benzyloxycarbonyl)cytosine (2.46 g, 10.0 mmol),
K2CO3 (1.04 g, 7.53 mmol), and TBAI (111 mg, 301 µmol) in dry
DMF (50 mL) was stirred at room temperature for 11 days under
argon. Insoluble material was filtered off and washed with DMF
and ethyl acetate. The filtrate and the washing solutions were
pooled. After absorption on silica gel the crude product was puri-
fied by chromatography (silica gel, ethyl acetate/n-hexane, 3:1 to
5:1) to afford 8 (730 mg, 44%) as a colorless solid. M.p. 55 °C. Rf ϭ
0.26 (ethyl acetate/n-hexane, 3:1). [α]2D0 ϭ ϩ21.9 (c ϭ 0.24, MeOH).
IR (KBr): ν˜ ϭ 3366, 2976, 1738, 1694, 1627, 1503, 1366, 1214,
1
1341, 1247, 1203, 1148, 1055 cmϪ1. H NMR (300 MHz, CDCl3,
25 °C): δ ϭ 1.42 (s, 9 H, tBu), 1.91 [s, 3 H, C(5)-CH3], 1.80Ϫ1.93
3
[m, 2 H, C(γ)-H], 2.55 [d, JH,H ϭ 7 Hz, 2 H, C(α)-H], 3.52Ϫ3.67
[m, 1 H, C(δ)-H], 3.83Ϫ4.01 [m, 2 H, C(β)-H, C(δ)-H], 5.09 (m, 2
H, CH2Ph), 5.18 (m, 1 H, NH), 7.20 [m, 1 H, C(6)-H], 7.28Ϫ7.37
(m, 5 H, Ph), 7.46 (m, 2 H, Phm), 7.61 (m, 1 H, Php), 7.91 (m, 2
H, Pho) ppm. 13C NMR (75 MHz, CDCl3, 25 °C): δ ϭ 12.3 [C(5)-
CH3], 28.3 [C(CH3)3], 33.5 [C(γ)], 39.4 [C(α)], 45.1 [C(β)], 46.4
[C(δ)], 66.6 (CH2Ph), 79.8 [C(CH3)3], 110.5 [C(5)], 128.3Ϫ128.6
(Ph), 129.1 (2 C, COPh), 130.4 (2 C, COPh), 131.6 (COPh), 134.9
(COPh), 135.5 (Cipso, CH2Ph), 140.9 [C(6)], 149.8 (NHCO2), 155.5
[C(4)], 163.2 [C(2)], 169.1 (NHCOPh), 171.0 (CO2Bzl) ppm. MS
(ESI): m/z (%) ϭ 558.2 (40) [M ϩ Na]ϩ, 1093.3 (100) [2 M ϩ Na]ϩ.
C29H33N3O7·Na (558.2): calcd. 558.2216; found 558.2210 (HRMS).
1055, 788, 746, 697 cmϪ1 1H NMR (300 MHz, CDCl3, 25 °C):
.
δ ϭ 1.41 (s, 9 H, tBu), 1.83Ϫ2.06 [m, 2 H, C(γ)-H], 2.57 [d, 3JH,H ϭ
5 Hz, 2 H, C(α)-H], 3.58Ϫ3.76 [m, 1 H, C(δ)-H], 3.84Ϫ4.01 [m, 1
H, C(β)-H], 4.03Ϫ4.17 [m, 1 H, C(δ)-H], 5.08 (s, 2 H, CH2Ph), 5.20
(s, 2 H, CH2Ph), 5.27 (d, 3JH,H ϭ 10 Hz, 1 H, NH), 7.12Ϫ7.22 [m,
1 H, C(5)-H], 7.26Ϫ7.31 (m, 10 H, 2 Ph), 7.83Ϫ7.85 [m, 1 H, C(6)-
H] ppm. 13C NMR (125 MHz, CDCl3, 25 °C): δ ϭ 28.3 [C(CH3)3],
Benzyl (R)-β-(tert-Butoxycarbonylamino)-δ-(2-amino-6-chloropurin-
9-yl)pentanoate (11): Bromide 3 (3.77 g, 9.76 mmol) was added to a
suspension of 2-amino-6-chloropurine (2.48 g, 14.6 mmol), K2CO3
33.2 [C(γ)], 39.4 [C(α)], 45.0 [C(β)], 48.5 [C(δ)], 66.5 (CH2Ph), 67.8 (2.02 g, 14.6 mmol), and TBAI (361 mg, 977 µmol) in dry DMF
(CH2Ph), 79.7 [C(CH3)3], 94.7 [C(5)], 128.1Ϫ128.6 (Ph), 135.1 (100 mL). The mixture was stirred at room temperature for 6 days
(Cipso, Ph), 135.5 (Cipso, Ph), 149.4 [C(6)], 152.4, 155.6, 162.4, 162.5, under argon. After removal of the solvent the residue was absorbed
Eur. J. Org. Chem. 2003, 3555Ϫ3561
2003 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
3559