Cyclic Disulfide C(8) Iminoporfiromycin
A R T I C L E S
anhydrous methanolic solution (1 mL) of 14 (8.7 mg, 0.023 mmol)
and triethylamine (11 µL, 0.08 mmol) was added a methanolic solution
(1 mL) of 27 (5.4 mg, 0.015 mmol). The reaction solution was stirred
at room temperature (2 d) and then the solvent was removed in vacuo.
Purification by PTLC (10% MeOH-CHCl3) afforded 12: yield, 4.8
mg (71%); HPLC tR 27.6 min; Rf 0.45 (10% MeOH-CHCl3); UV-
vis (CH3CN-H2O) λmax 225, 366 nm; 1H NMR (pyridine-d5, 300 MHz)
δ 1.85 (s, C(6)CH3), 2.71 (dd, J ) 3.9, 1.8 Hz, C(2)H), 3.08-3.25 (m,
C(1)H, C(2′)H, C(3′)HH′, C(6′)HH′), 3.30 (s, C(9a)OCH3), 3.42-3.61
(m, C(1′)H, C(3′)HH′, C(6′)HH′), 3.64 (br d, J ) 11.9 Hz, C(3)HH′),
4.05 (dd, J ) 11.4, 4.2 Hz, C(9)H), 4.46 (d, J ) 11.9 Hz, C(3)HH′),
5.26 (dd, J ) 11.4, 10.2 Hz, C(10)HH′), 5.77 (dd, J ) 10.2, 4.2 Hz,
C(10)HH′), 6.70 (br s, C(7)NH), the signals for the N(1a)H and C(10)-
OC(O)NH2 protons were not detected and are believed to be beneath
the solvent peaks; 13C NMR (pyridine-d5, 75 MHz) δ 8.3 (C(6)CH3),
34.0 (C(2)), 38.1 (C(1)), 38.8 (C(3′) or C(6′)), 47.7 (C(9)), 49.4 (C(9a)-
OCH3), 56.6 (C(2′)), 63.4 (C(10)), 63.5 (C(1′)), 106.9 (C(6)), 107.5
(C(9a)), 114.9 (C(8a)), 140.9 (C(7)), 148.9 (C(5a)), 153.1 (C(8)), 158.6
(C(10a)), 178.8 (C(5)), the signals for C(3) and either C(6′) or C(3′)
were not detected and are believed to overlap with the observed peaks;
MS (+ESI) m/z 450 [M+1]+.
Methanolysis of C(8) Iminoporfiromycin 6 To Give cis-(31) and
trans-(32) C(1) 1-Methoxy (8) Imino-2-methylaminomitosenes.
Compound 6 (4.8 mg, 0.01 mmol) was dissolved in a buffered
methanolic solution (0.1 M bis-Tris‚HCl, “pH” 5.5, 2 mL) and then
stirred at room temperature (21 h). The solvent was removed under
reduced pressure and the residue was purified using PTLC (10%
MeOH-CHCl3) to provide the desired compounds.
Compound 31: yield, 1.7 mg (37%); HPLC tR 31.8 min; Rf 0.26
(10% MeOH-CHCl3); UV-vis (CH3CN-H2O) λmax 255, 319 nm; 1H
NMR (pyridine-d5, 300 MHz) δ 2.00 (s, C(6)CH3), 2.48 (s, NHCH3),
3.16-3.34 (m, C(2′)H, C(3′)HH′, C(6′)HH′), 3.51 (s, C(1)OCH3), 3.52-
3.64 (m, C(1′)H, C(3′)HH′, C(6′)HH′), 3.73-3.82 (m, C(2)H), 4.09
(dd, J ) 11.7, 9.3 Hz, C(3)HH′), 4.92 (dd, J ) 11.7, 7.5 Hz, C(3)-
HH′), 5.01 (d, J ) 5.1 Hz, C(1)H), 5.76 (1/2ABq, J ) 12.9 Hz, C(10)-
HH′), 5.94 (1/2ABq, J ) 12.9 Hz, C(10)HH′), 6.61 (br s, C(7)NH),
the signals for the C(2)NH and C(10)OC(O)NH2 protons were not
detected and are believed to be beneath the solvent peaks; MS (+FAB)
m/z 464 [M+1]+; Mr (+FAB) 464.141 49 [M+1]+ (calcd for
C20H26N5O4S2, 464.142 62).
4.88 (dd, J ) 11.5, 7.5 Hz, C(3)HH′), 5.84 (1/2ABq, J ) 13.2 Hz,
C(10)HH′), 6.11 (1/2ABq, J ) 13.2 Hz, C(10)HH′), 6.57 (br s, C(7)-
NH), the signals for the C(1)H, C(2)NH and C(10)OC(O)NH2 protons
were not detected and are believed to be beneath the solvent peaks;
MS (+FAB) m/z 428 [M+1]+; Mr (+FAB) 428.230 34 [M+1]+ (calcd
for C22H30N5O4, 428.229 78).
Compound 34:35 yield, 0.9 mg (45%); HPLC tR 27.9 min; Rf 0.29
(10% MeOH-CHCl3); UV-vis (CH3CN-H2O) λmax 251, 315 nm; 1H
NMR (pyridine-d5, 300 MHz) δ 1.17-1.48 (m, C(4′)HH′, C(5′)HH′,
C(3′)HH′, C(6′)HH′), 1.52-1.56 (m, C(4′)HH′), 1.62-1.66 (m, C(5′)-
HH′), 1.95-1.99 (m, C(3′)HH′), 2.10 (s, C(6)CH3), 2.42 (s, NHCH3),
2.42-2.45 (m, C(6′)HH′), 2.93 (ddd, J ) 12.3, 12.3, 3.0 Hz, C(2′)H),
3.23-3.30 (m, C(1′)H), 3.55 (s, C(1)OCH3), 3.86 (d, J ) 5.1 Hz,
C(2)H), 4.51 (d, J ) 12.9 Hz, C(3)HH′), 4.63 (dd, J ) 12.9, 5.1 Hz,
C(3)HH′), 5.05 (s, C(1)H), 5.90 (1/2ABq, J ) 12.6 Hz, C(10)HH′),
5.98 (1/2ABq, J ) 12.6 Hz, C(10)HH′), 6.45 (br s, C(7)NH), the signals
for the C(2)NH and C(10)OC(O)NH2 protons were not detected and
are believed to be beneath the solvent peaks; MS (+FAB) m/z 428
[M+1]+; Mr (+FAB) 428.229 56 [M+1]+ (calcd for C22H30N5O4,
428.229 78).
General Procedure for the Solvolysis of Porfiromycins (Kinetic
Studies). To a buffered methanolic solution (0.1 M Tris‚HCl, “pH”
7.4; 0.1 M bis-Tris‚HCl, “pH” 5.5) (final volume 1.5 mL) maintained
at 25 °C containing the porfiromycin (10-60 µL of 4 mM methanolic
solution, final concentration 0.03-0.17 mM) was added a methanolic
solution (5-50 µL) of the nucleophile of choice (stock solution: 4-20
mM, final nucleophile concentration 0.015-3.0 mM). The reaction was
monitored by UV-visible spectroscopy (200-600 nm), and typically
followed for greater than two half-lives. The “pH” of the solution was
determined at the conclusion of the reaction and found to be within (
0.1 pH units of the original solution. The reaction products (31 + 32,
33 + 34) were identified by co-injection with authentic samples using
HPLC and cospotting with authentic samples using TLC. The λmax of
porfiromycin (∼365 nm) was plotted versus time and found to decrease
in a first-order decay (exponential decay) process. The nonlinear
regression analysis to fit the observed exponential decay by SigmaPlot
Program (SigmaPlot, 2001) yielded pseudo-first-order rate constants
(kobs) and half-lives (t1/2). The reactions were done in duplicate and the
results averaged.
General Procedure for Alkaline Agarose Gel Electrophoresis.50
The agarose gels were prepared by adding 1.2 g of agarose to 100 mL
of an aqueous 100 mM NaCl and 2 mM EDTA solution (pH 8.0). The
suspension was heated in a microwave oven until all of the agarose
was dissolved (1 min). The gel was poured and was allowed to cool
and solidify at room temperature (1 h). The gel was soaked in an
aqueous alkaline running buffer solution (50 mL) containing 40 mM
NaOH and 1 mM EDTA (1 h) and then the comb was removed. The
buffer solution was refreshed prior to electrophoresis.
Compound 32: yield, 1.7 mg (37%); HPLC tR 29.7 min; Rf 0.27
(10% MeOH-CHCl3); UV-vis (CH3CN-H2O) λmax 255, 316 nm; 1H
NMR (pyridine-d5, 300 MHz) δ 1.99 (s, C(6)CH3), 2.47 (s, NHCH3),
3.17-3.38 (m, C(2′)H, C(3′)HH′, C(6′)HH′), 3.54 (s, C(1)OCH3), 3.55-
3.78 (m, C(1′)H, C(3′)HH′, C(6′)HH′), 3.92 (d, J ) 5.1 Hz, C(2)H),
4.53 (d, J ) 12.6 Hz, C(3)HH′), 4.64 (dd, J ) 12.6, 5.1 Hz, C(3)HH′),
5.11 (s, C(1)H), 5.75 (1/2ABq, J ) 12.9 Hz, C(10)HH′), 5.88 (1/2ABq,
J ) 12.9 Hz, C(10)HH′), 6.51 (br s, C(7)NH), the signals for the C(2)-
NH and C(10)OC(O)NH2 protons were not detected and are believed
to be beneath the solvent peaks; MS (+FAB) m/z 464 [M+1]+; Mr
(+FAB) 464.142 47 [M+1]+ (calcd for C20H26N5O4S2, 464.142 62).
Methanolysis of C(8) Iminoporfiromycin 13 To Give cis-(33) and
trans-(34) 1-Methoxy C(8) Imino-2-methylaminomitosenes.35 Com-
pound 13 (2.0 mg, 0.004 mmol) was dissolved in a buffered methanolic
solution (0.1 M bis-Tris‚HCl, “pH” 5.5, 1 mL) and then stirred at room
temperature (18 h). The solvent was removed under reduced pressure
and the residue was purified using PTLC (10% MeOH-CHCl3) to
provide the desired compounds.
Compound 33:35 yield, 0.6 mg (30%); HPLC tR 29.0 min; Rf 0.26
(10% MeOH-CHCl3); UV-vis (CH3CN-H2O) λmax 251, 315 nm; 1H
NMR (pyridine-d5, 300 MHz) δ 1.19-1.32 (m, C(4′)HH′, C(5′)HH′),
1.40-1.48 (m, C(3′)HH′, C(6′)HH′), 1.54-1.58 (m, C(4′)HH′), 1.64-
1.68 (m, C(5′)HH′), 1.96-2.02 (m, C(3′)HH′), 2.12 (s, C(6)CH3), 2.38
(s, NHCH3), 2.45-2.50 (m, C(6′)HH′), 2.93 (ddd, J ) 11.7, 11.7, 2.7
Hz, C(2′)H), 3.28 (ddd, J ) 11.7, 11.7, 2.7 Hz, C(1′)H), 3.51 (s, C(1)-
OCH3), 3.58-3.62 (m, C(2)H), 4.01 (dd, J ) 11.5, 9.0 Hz, C(3)HH′),
To an aqueous solution of ∼85 µL of H2O (sterile) and 2.5 µL of 1
M Tris‚HCl (pH 7.4) was added a solution of linearized pBR322 (5
µL, 5 µg) in 10 mM Tris solution containing 1 mM EDTA (pH 8.0).
After deaeration with Ar (15 min), porfiromycin (1-5 µL of 1-4 mM
DMSO solution, final concentration 0.01-0.2 mM) and a nucleophile
of choice (1-5 µL of 1-20 mM DMSO solution, final concentration
0.01-1.0 mM) were added and the resulting solution (final volume
100 µL) was incubated at room temperature (2 h). The solution was
washed with 1:1 PhOH/CHCl3 (100 µL) and CHCl3 (2 × 100 µL), and
precipitated (12.1 µL of 3 M NaOAc and 250 µL of EtOH, -70 °C
(10 min)). The mixture was centrifuged at 0 °C (15 min), and the EtOH
was decanted off and evaporated in vacuo. The remaining DNA was
dissolved in 25 µL of 10 mM Tris solution containing 1 mM EDTA
(pH 8.0). Agarose loading dye (5 µL) was added to the sample (5 µL)
and the samples were loaded onto the wells. The gel was run at 75
mA/25 V (30 min) and then at 145 mA/38 V (3-4 h). The gel was
then neutralized for 45 min in an aqueous 100 mM Tris pH 7.0 buffer
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J. AM. CHEM. SOC. VOL. 126, NO. 13, 2004 4291