Wijtmans et al.
for 2 h at -78 °C, the reaction mixture was warmed and
quenched with saturated aq NH4Cl. The THF layer was
separated and the aqueous layer extracted once with EtOAc.
The organic layers were dried (MgSO4), filtered, and concen-
trated. The crude product was purified by column chromatog-
raphy (1:1 hexanes:EtOAc) to afford a yellow solid (150 mg,
25%) of sufficient purity for further experiments. λmax (MeOH)
331 nm; mp 126-132 °C dec; 1H NMR (CDCl3 + drop of D2O,
300 MHz) δ 3.19 (br s, 2H, NCH2), 3.03 (br s, 3H, N-Me), 2.62
(br s, 2H, Ar-CH2), 2.33 (br s, 3H, 6-Me), 2.06 (br s, 3H, 4-Me),
1.96 (s, 2H, CH2); after standing overnight in CDCl3 and D2O
110.2, 77.6, 77.2, 40.9, 24.3, 20.1, 3.9; HRMS for C11H15N3 [M
+ Na] 212.1158, found 212.1177. Anal. Calcd for C11H15N3: C
69.81, H 7.99, N 22.20. Found: C 69.92, H 8.10, N 22.38.
2-[N-Acetyl-N-(1-pent-3-ynyl)amino]-4,6-dimethylpyr-
imidine (20). Amine 19 (3.0 g, 15.87 mmol) and DMAP (387
mg, 3.2 mmol) were heated overnight in Ac2O (30 mL) at ca.
100 °C. The reaction mixture was cooled and the solvent was
removed in vacuo. The residue was dissolved in EtOAc and
washed with saturated aq NaHCO3 solution and brine to
remove the bulk of DMAP. The organic layer was dried
(MgSO4), concentrated in vacuo, and dried under high vacuum
to yield a brown-orange solid (3.33 g, 91%) of sufficient purity
for further experiments. An analytical sample was obtained
by column chromatography (2:1 hexanes:EtOAc) followed by
recrystallization from hexanes to afford white crystals. Mp 63
°C; 1H NMR (CDCl3, 300 MHz) δ 6.78 (s, 1H, ArH), 4.12 (t,
2H, NCH2, J ) 7.6 Hz), 2.44 (m, 2H, CH2CtC), 2.42 (s, 6H,
Ar-CH3), 2.31 (s, 3H, COCH3), 1.65 (t, 3H, CtCCH3, J ) 2.5
Hz); 13C NMR (CDCl3, 75 MHz) δ 172.5, 168.5, 161.5, 116.7,
77.6, 77.2, 46.3, 25.9, 24.6, 19.3, 4.1; HRMS for C13H17N3O [M
+ Na] 254.1264, found 254.1274. Anal. Calcd for C13H17N3O:
C 67.51, H 7.41, N 18.17. Found: C 67.13, H 7.35, N 18.06.
1-Acetyl-4,6-dimethyl-2,3-dihydro-1H-pyrrolo[2,3-b]pyr-
idine (21). Acetamide 20 (4.0 g, 17.3 mmol) was heated at
reflux in diphenyl ether (50 mL) for 10 h. The solution was
cooled and ether (25 mL) was added. The resulting solution
was extracted with aq 1 M HCl (3 × 25 mL). The aqueous
layers were combined and carefully neutralized with solid
NaHCO3 until the pH was slightly basic. The suspension was
extracted 3× with CH2Cl2. MgSO4 and activated charcoal were
added to the combined organic layers and the mixture was
stirred for 10 min. After filtration, the filtrate was concentrated
under reduced pressure and dried under high vacuum. The
residue was recrystallized from hexanes/EtOAc to afford
orange crystals (2.69 g, 82%). Mp 105 °C; 1H NMR (CDCl3,
300 MHz) δ 6.53 (s, 1H, Ar-H), 4.07 (t, 2H, NCH2, J ) 8.7
Hz), 2.86 (t, 2H, CH2, J ) 8.7 Hz), 2.65 (s, 3H, COMe), 2.36 (s,
3H, 6-Me), 2.15 (s, 3H, 4-Me); 13C NMR (CDCl3, 75 MHz) δ
170.7, 155.7 (two overlapping C), 144.5, 121.7, 118.8, 45.9, 25.1,
24.4, 23.1, 18.6. HRMS for C11H14N2O [M + H] 191.1179, found
191.1176. Anal. Calcd for C11H14N2O: C 69.45, H 7.42, N 14.73.
Found: C 69.43, H 7.45, N 14.80.
4,6-Dimethyl-2,3-dihydro-1H-pyrrolo[2,3-b]pyridine (22).
Acetamide 21 (2.69 g, 14.1 mmol) was dissolved in MeOH (100
mL). Solid NaOH (2.27 g, 56.6 mmol) was added and the
mixture was heated at reflux overnight. Solid NH4Cl (3.03 g,
56.5 mmol) was added to neutralize the solution and then
MeOH was removed by evaporation. The resulting solids were
extracted with CH2Cl2 (3×). The combined organic extracts
were concentrated in vacuo and dried under high vacuum. The
product was obtained as an orange solid in quantitative yield
with satisfactory purity. Further purification could be achieved
by recrystallization from EtOAc, although the resulting orange
crystals retained traces of CH3COOH. Mp 150 °C; 1H NMR
(CDCl3, 300 MHz) δ 6.05 (s, 1H, Ar-H), 4.56 (br s, 1H, NH),
3.54 (t, 2H, NCH2, J ) 8.4 Hz), 2.91 (t, 2H, CH2, J ) 8.3 Hz),
2.28 (s, 3H, 6-Me), 2.09 (s, 3H, 4-Me); 13C NMR (CDCl3, 75
MHz) δ 164.4, 154.3, 142.4, 117.2, 114.2, 44.2, 26.2, 23.6, 18.2;
HRMS for C9H12N2 [M + H] 149.1073, found 149.1077. Anal.
Calcd for C9H12N2: C 72.94, H 8.16, N 18.90. Found: C 72.37,
H 8.13, N 18.81.
5-Bromo-4,6-dimethyl-2,3-dihydro-1H-pyrrolo[2,3-b]-
pyridine (23). This compound was prepared from amine 22
(0.92 g, 6.2 mmol), CH2Cl2 (25 mL), and 1,3-dibromo-5,5-
dimethylhydantoin (0.86 g, 3.1 mmol) following the same
procedure as for 13. After being quenched with Na2S2O3 and
KOH, the mixture was extracted with CH2Cl2 (3×). The
organic layers were dried (MgSO4), concentrated in vacuo, and
dried under high vacuum to yield a yellow solid. This solid
consisted of ∼90% product and ∼10% remaining starting
material (by NMR, 83% corrected yield). This compound proved
difficult to purify due to its extremely low solubility in any
1
under argon, the peaks sharpened; H NMR (CDCl3 + D2O,
300 MHz) δ 3.19 (t, 2H, NCH2, J ) 5.6 Hz), 3.03 (s, 3H, N-Me),
2.62 (t, 2H, Ar-CH2, J ) 6.6 Hz), 2.33 (s, 3H, 6-Me), 2.06 (s,
3H, 4-Me), 1.96 (p, 2H, CH2, J ) 6.4 Hz); 13C NMR (CDCl3 +
D2O, 75 MHz) δ 151.3, 140.1, 138.5, 132.4, 114.6, 50.1, 37.4,
24.9, 22.1, 18.9, 11.5; HRMS for C11H16N2O [M + H] 193.1335,
found 193.1345. The material was recrystallized from hot
hexanes to give a light brown solid, although the following
elemental analysis of this material actually suggested that the
purity was diminished after this. Anal. Calcd for C11H16N2O:
C 68.72, H 8.39, N 14.57. Found: C 67.78, H 8.41, N 13.92.
Hex-4-ynoic Acid (16). This compound was prepared
according to the literature from hex-5-ynoic acid, mp 100 °C.
NMR data have been reported.40
tert-Butyl Pent-3-ynylcarbamate (17). Acid 16 (7.7 g, 6.9
mmol) was dissolved in t-BuOH (100 mL). Diphenylphosphoryl
azide (16.3 mL, 7.6 mmol) and Et3N (9.57 mL, 6.9 mmol) were
added and the reaction mixture was heated at reflux for 30 h.
The solvent was evaporated and the residue dissolved in
EtOAc. This solution was extracted with 1 N aq HCl, water,
saturated aq NaHCO3, and brine. The organic layer was dried
(MgSO4) and concentrated in vacuo. This afforded 9.97 g (79%)
of a crude yellow oil that was sufficiently pure for the next
1
step. H NMR (CDCl3, 300 MHz) δ 4.82 (br s, 1H, NH), 3.20
(m, 2H, NCH2), 2.30 (m, 2H, CtCCH2), 1.76 (t, 3H, CtCMe,
J ) 2.5 Hz), 1.45 (s, 9H, t-Bu); 13C NMR (CDCl3, 75 MHz) δ
155.8, 79.3, 77.2, 76.3, 39.7, 28.4, 20.2, 3.5. HRMS for
C10H17NO2 [M + Na] 206.1151, found 206.1154.
Pent-3-ynylamine Hydrochloride (18). Crude BOC-
protected amine 17 (16.34 g, 8.9 mmol) was dissolved in
ethereal 2 M HCl (50 mL). The solution was stirred for 24 h,
during which a precipitate was formed. The crystals were
filtered off, washed with ether, and dried. This afforded the
ammonium salt (7.46 g, 70%) as white crystals. 1H NMR (D2O,
300 MHz) δ 3.07 (t, 2H, NCH2, J ) 6.5 Hz), 2.51 (m, 2H,
CH2≡C), 1.73 (t, 3H, Me, J ) 2.1 Hz); 13C NMR (D2O, 75 MHz)
δ 80.8, 74.1, 38.9, 17.3, 2.8. NMR data were in agreement with
a literature report.26
4,6-Dimethylpyrimidin-2-yl Trifluoromethanesulfonate
(25). This compound was prepared according to the literature
procedure31 from 4,6-dimethylpyrimidin-2-ol. It was obtained
as a brown oil that was >95% pure. NMR data have been
reported.31
4,6-Dimethyl-2-(1-pent-3-ynylamino)pyrimidine (19).
Triflate 25 (19.18 g, 74.9 mmol), hydrochloride 18 (7.46 g, 62.4
mmol), and Et3N (34.7 mL, 250 mmol) were stirred in freshly
distilled DMF (150 mL) at room temperature for 1 d. Water
was added to decompose the remaining triflate and the
mixture was extracted with ether (3×) and water. To the
organic layers were added MgSO4 and activated charcoal and
the mixture was stirred for 10 min. After filtration, the filtrate
was concentrated and dried under high vacuum to afford a
light brown solid of good purity (10.98 g, 93%). The product
was recrystallized from water/acetone to afford white crystals
(6.78 g, 57%). Mp 64 °C; 1H NMR (CDCl3, 300 MHz) δ 6.22 (s,
1H, ArH), 5.35 (br s, 1H, NH), 3.58 (q, 2H, NCH2, J ) 6.5 Hz),
2.42 (m, 2H, CH2CtC), 2.27 (s, 6H, Ar-CH3), 1.77 (t, 3H, Ct
CCH3, J ) 2.6 Hz); 13C NMR (CDCl3, 75 MHz) δ 167.8, 162.5,
(40) Carling, R. W.; Clark, J. S.; Holmes, A. B.; Sartor, D. J. Chem.
Soc., Perkin Trans. 1 1992, 95.
9222 J. Org. Chem., Vol. 69, No. 26, 2004