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S. Gawaskar et al. / Bioorg. Med. Chem. Lett. 25 (2015) 5748–5751
Table 1
Table 1 displays the affinity of benzo[7]annulenamines 7 and 8
to the PCP binding site of the NMDA receptor as well as to r1 and
r2 receptors. At a test compound concentration of 1 lM, neither
Receptor affinities of the benzo[7]annulenamines 8 with NO2 moiety compared with
the affinities of the corresponding lead compounds 7 without NO2 moiety and some
reference compounds
the unsubstituted compounds 7 nor the nitro derivatives 8 were
able to compete with the radioligand [3H](+)-MK-801 indicating
high selectivity over the PCP binding site.
NHR1
NHR1
O2N
H
The NO2 derivatives 8 show two-digit nanomolar affinities
8
7
toward both r1 and r2 receptors. The
r affinities of 8 are consid-
erably higher than the affinities of the unsubstituted derivatives 7
indicating a strong contribution of the NO2 moiety to the interac-
tions with r1 and r2 receptors. However, the NO2 derivatives 8
are still selective for GluN2B containing NMDA receptors over both
r1 and r2 receptors, due to their very high GluN2B affinity. The
most potent GluN2B ligand 8c (Ki = 1.6 nM) is 11-fold and 7-fold
selective for GluN2B-containing NMDA receptors over r1 and r2
receptors, respectively. Interestingly, reduction of the phenyl-
propyl to the phenylethyl side chain in 7b and 8b leads to
increased selectivity over r2 receptors, while maintaining high
Compd
R1
Ki SEM [nM] (n = 3)
GluN2B
PCP
r1
r2
7a26
7b26
7c26
7d26
8a
8b
8c
8d
CH2Ph
57 5.7
20 7.4
16 3.5
17 1.5
7.6 0.7
3.3 1.0
1.6 0.9
3.8 2.1
10 0.7
13 2.0
—
16%
0%
0%
107
22 6.7
150
203
198
(CH2)2Ph
(CH2)3Ph
(CH2)4Ph
CH2Ph
(CH2)2Ph
(CH2)3Ph
(CH2)4Ph
27 12
55 7.4
16 2.0
44 25
11 3.9
11 5.2
98 34
—
2%
6%
8%
3%
3%
—
216
21 5.8
20 5.1
18 5.0
24 0.9
125 24
—
Ifenprodil (1)
Eliprodil (4)
Dexoxadrol
Haloperidol
Di-o-tolylguanidine
GluN2B affinity (GluN2B/r2 = 10 (7b) and 13 (8b)).
—
In order to understand the high GluN2B affinity of the NO2
derivatives 8, the most potent GluN2B ligand 8c and its unsubsti-
tuted analog 7c were docked into the Ro 25-6981 binding site of
the NMDA receptor. The binding poses of the ligands 7c and 8c
are displayed in Figure 3A and B, respectively. The docking studies
reveal that both ligands 7c and 8c form the same central H-bond
between the protonated amino moiety and the carbonyl O-atom
of Gln110 (GluN2B subunit) as ifenprodil. The phenylpropyl resi-
due rests in the hydrophobic pocket formed by lipophilic amino
acid residues such as Phe114 (GluN2B), Pro78 (GluN2B) and
Tyr109 (GluN1b). The phenylpiperidine part of ifenprodil occupies
the same lipophilic pocket in the crystal structure.
32 7.4
—
—
—
—
—
—
6.3 1.6
89 29
78 2.3
57 18
Note: For compounds with low affinity only the inhibition of the radioligand
binding (in%) at a test compound concentration of 1 M is given.
l
of GluN1a and GluN2B subunits.27 After induction of the produc-
tion of the NMDA receptor subunits by addition of dexamethasone,
the cells were grown, harvested, worked-up and the membrane
preparations were standardized. [3H]-labeled ifenprodil ([3H]1)
was employed as radioligand.
The GluN2B affinity of benzo[7]annulenamines without NO2
moiety (7) and with NO2 moiety in 2-position (8) is summarized
in Table 1. The Ki(GluN2B) values of the secondary amines 8 with
a 2-NO2 group are lower than 10 nM, indicating a higher GluN2B
affinity than the reference compound ifenprodil (Ki = 10 nM).
Compared to the unsubstituted benzo[7]annulenamines 7, the
GluN2B affinity of the NO2 derivatives 8 is 5 to 10-fold higher.
The unsubstituted amines 7 show a strong dependence of the
GluN2B affinity on the length of the amino substituent.26
Whereas the benzylamine 7a with the shortest side chain
displays the lowest GluN2B affinity (Ki = 57 nM), the phenyl-
propylamine 7c has the highest GluN2B affinity (Ki = 16 nM).
The same trend is observed for the NO2 derivatives 8, but at a
considerably higher level of affinity: the lowest affinity was found
for the benzylamine 8a (Ki = 7.6 nM), the highest affinity for the
phenylpropylamine 8c (Ki = 1.6 nM). The same trend within both
series of ligands supports the hypothesis that a distance of four
bond lengths (three CH2 moieties) between the amino moiety
and the terminal phenyl ring is optimal for this type of GluN2B
ligands.
In the crystal structure the phenolic OH group of ifenprodil
forms an H-bond with carboxylate of Glu236 (GluN2B). The miss-
ing substituent at 2-position of 7c precludes the formation of this
H-bond interaction with Glu236. The lack of this anchoring sub-
stituent led in addition to the depicted binding pose to inverted
binding poses, i.e., binding poses with the benzo[7]annulene sys-
tem occupying the above mentioned lipophilic binding pocket.
The energetically most favored pose is depicted in Figure 3A. The
comparable GluN2B affinity of 7c (Ki = 16 nM) with ifenprodil
(Ki = 10 nM) suggests that the lipophilic nature of ligand 7c is able
to compensate the loss of enthalpic contribution to binding.
An additional H-bond interaction with the phenolic OH group of
ifenprodil and a bound H2O molecule is found in the X-ray crystal
structure of the dimeric receptor containing ifenprodil. The dock-
ing studies of the 2-NO2 derivative 8c led also to polar interactions
between this H2O molecule and the 2-NO2 moiety (Fig. 3B). This
H2O molecule is bound to the receptor by a network of H-bonds
with the backbone amino acids Leu205 (GluN2B), Met207
(GluN2B) and Tyr175 (GluN2B). It is assumed that the polar inter-
actions between the NO2 moiety and the bound H2O molecule in
the receptor binding pocket are responsible for the high GluN2B
affinity of the NO2 derivatives 8 compared to the unsubstituted
derivative 7. Additionally, the NO2 group anchors the ligand 8c in
a particular pose as shown in Figure 3B and leads to a preferential
orientation over an inverted pose, in contrast to the observation for
7c.
The lead compounds 1–3 contain an OH moiety at the benzene
ring, which increases the electron density of the benzene ring and
is able to act as H-bond donor. Since the NO2 moiety represents an
electron withdrawing substituent, which can only function as H-
bond acceptor, the high GluN2B affinity of the NO2 derivatives 8
was completely unexpected.
In order to learn more about the selectivity, the affinity of the
2-nitro derivatives 8 at the PCP binding site of the NMDA receptor
In conclusion, conformational restriction of the potent GluN2B
ligand Ro 25-6981 and removal of the polar OH moieties led to
and at
was considered, since it represents an alternative binding site at
the NMDA receptor.28–30 The affinity toward the
receptors was
r1 and r2 receptors were determined. The PCP binding site
the unsubstituted benzo[7]annulen-7-amines
7 with GluN2B
affinities in the range 16–57 nM. This result showed that the polar
substituents of Ro 25-6981 are not essential for strong interaction
with GluN2B containing NMDA receptors. Introduction of an addi-
tional NO2 moiety in 2-position of the benzo[7]annulene scaffold
increased, however, the GluN2B affinity 5- to 10-fold compared
with the unsubstituted derivatives 7. The phenylpropylamines 7c
r
recorded, since ifenprodil interacts also with r1 and r2
receptors.31–33 In the radioligand binding assays the radioligands
[3H](+)-MK-801 (PCP binding), [3H](+)-pentazocine ( 1) and [3H]
r
di-tolylguanidine (r2), were used.