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are deaminated products of tyrosine and tryptophan (data not
aspartic acid via exchanging individual biosynthetic machin-
ery. Additionally, their selection and incorporation into PKS
assembly can be performed by the AT domains of SpnD and
AntD, which overcome the current limitation of extender unit
selection. This versatile extender unit synthetic pathway
broadens the specificity of the AT domain and paves the way
for introducing additional amino acids and synthetic aromatics
with diverse structural diversity and chemical reactivity into
the polyketide carbon scaffold.
shown), sequence analysis with the well-studied CCR CinF
revealed that their binding pockets have the potential for en-
largement (Figure S5). By replacing the selectivity-conferring
residues (V163 and V362, numbers corresponding to CinF)
with smaller residues such as glycines, these CCRs may be
able to accept bulky aromatic substrates. Currently, several
structures of broad-selective CCRs have been made availa-
ble.3i,27 Based on the protein structures, directed evolution at
these sites could highly effective in expand CCR’s selectivity
scope. It is believed, the strategy disclosed here can be readily
tailored to convert other amino acids including tyrosine, histi-
dine and aspartic acid into CoA-linked extender units. Extend-
er units derived from amino acids, particularly those with ar-
omatic moieties and active groups will greatly expand their
chemical diversity, and facilitate polyketide structural engi-
neering.
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ASSOCIATED CONTENT
Supporting Information. Experimental details and characteriza-
tion data. This material is available free of charge via the Internet
AUTHOR INFORMATION
Corresponding Author
Broad Selectivity of the AT Domain and Potential to In-
troduce Structural Diversity into the Polyketide Scaffold.
With ATs serving as a gatekeeper for extender unit selection,
they are other critical factors for structural engineering. Cur-
rently introducing aromatic groups into polyketide scaffolds
through extender unit selection is not yet possible, mostly be-
cause ATs lack aromatic-selectivity.28 In this study, we charac-
terized the first example of an AT domain (SpnD-AT) that can
effectively select an aromatic extender unit to introduce a ben-
zyl group into the SPN scaffold. Through in vivo study we
further validated that the AT domain of AntD is also compe-
tent in accepting benzylmalonyl-CoA (3). These discoveries
overcome the current limitation of AT selection to now in-
clude aromatics.
Author Contributions
§These authors contributed equally.
Funding Sources
This work was supported by NSFC grants (31322002,
31270119, and 31400052), Program of NCET (NCET-12-0423),
the State Key Laboratory of Materials-Oriented Chemical Engi-
neering (KL13-19), and China Postdoctoral Science Foundation
(2014M560620 and 2014M552077).
ACKNOWLEDGMENT
We thank Prof. William Fenical at Scripps Research Institute
for provision of the strain CNQ431; Prof. Ikuro Abe and Dr. Li-
han Zhang at Tokyo University for gifting CoA substrates; Prof.
Yizheng Zhang at Shichuan University for provision of the plas-
mid pCIBhis; Prof. Chao Peng at National Center for Protein Sci-
ence Shanghai for performing the Mass analysis and Prof. Kui
Hong at Wuhan University for provision of the ENC fermentation
condition.
Previously, we demonstrated AntD can accept various types
and lengths of substituted extender units.13 Most of these sub-
strates are bulkier than extender units derived from amino
acids, suggesting AntD-AT is able to select other amino acid-
derived extender units. By coupling the versatile extender unit
synthetic strategy and AT swapping, a complete pathway to
introduce amino acid varieties into polyketide carbon scaffolds
can likely be constructed. In addition, besides aromatic groups
from amino acids, these biosynthetic proteins can also be tai-
lored to introduce synthetic aromatics into the polyketide scaf-
fold. CoA ligases converting cinnamate analogues into their
CoA forms are available.5e,20 These genes can be co-expressed
with selectivity-improved CCRs to constitute an artificial
pathway for converting synthetic cinnamates into CoA-linked
extender units. With the selection of SpnD-AT or AntE-AT,
introduction of synthetic cinnamate varieties into polyketide
scaffold is potentially feasible. Currently, elucidation of the
SpnE-AT structure is underway. With structural-based direct
evolution, it is believed this selectivity can be engineered to
allow for more diverse aromatic groups.
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CONCLUSION:
In summary, we have characterized the formation and selec-
tion of the aromatic extender unit benzylmalonyl-CoA (3)
from the biosynthesis of splenocin and enterocin. The synthe-
sis of this extender unit is distinct from the previous known
CoA-linked extender units. By employing
a deamina-
tion/reductive carboxylation strategy, phenylalanine is con-
verted into the CoA-linked extender unit. More significantly,
this pathway is concise and highly versatile which can be ap-
plied to a few amino acids including tyrosine, histidine and
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