Y. Xu, et al.
BBA-GeneralSubjects1865(2021)129740
was cultivated in YPD medium (pH 5.5) containing 10 g·L−1 yeast ex-
tract, 5 g·L−1 tryptone, 20 g·L−1 glucose, and 15 g·L−1 agar (only for
solid media).
2.3. General molecular biology methods
Restriction endonucleases, DNA polymerases, and ligases were
purchased from Thermo Fisher Scientific. Genomic DNA was prepared
as reported earlier [13]. High fidelity Taq DNA polymerase (KOD plus,
Toyobo) was used for DNA cloning, whereas genotype verification was
carried out by using ExTaq DNA polymerase (Takara). The PCR-am-
plified products were purified from the agarose gels using a GeneJet Gel
Extraction Kit (Thermo Scientific). Sangon Biotech (Shanghai, China)
performed the primers synthesis and DNA sequencing, while the syn-
thetic DNA was provided by Genewiz (Suzhou, China).
Fig. 1. The regiospecific oxidation of galactitol by the genera of Acetobacter and
Gluconobacter.
Galactitol can be simultaneously oxidized by PQQ-dependent membrane-bound
dehydrogenase(s) to D-tagatose and L-xylo-3-hexulose at the C-5 and C-3, re-
spectively.
membrane-bound dehydrogenases of A. suboxydans (nowadays as G.
suboxydans) [8–11] (Fig. S1b). However, an anomalous oxidation pat-
tern was observed five decades ago in the case of ω-deoxy sugar alco-
hols such as L-fucitol, a kind of 6-methyl substituted hexitol (Fig. S2a)
[8,12]. This reaction to ω-deoxy alcohols was considered as the ex-
tension to Bertrand-Hudson rule, in which the terminal methyl group
was simply as an elongated CH2OH group, i.e., the methyl group can be
seen as the substitution of H atom covalently linked to a carbon atom.
Thus the 6-deoxy-L-galactitol has the D-erythro configuration, and it's
corresponding –OH group can be oxidized to keto group by A. sub-
2.4. Biotransformations of galactitol with whole resting cells
The Acetobacter or Gluconobacter strains in Table 1 were first culti-
medium (15 g/L yeast extract, 3 g/L tryptone, supplemented with 50 g/
L glucose and 15 g/L calcium carbonate) for 60 h at 30 °C and 150 rpm.
The cells were harvested by centrifugation at 10,000 g for 10 min and
washed twice with sterilized potassium phosphate buffer (10 mM PBS,
pH 6.0). These cells were used for the biotransformation of galactitol
(40 g/L) in 20 mL reaction mixture at 30 °C, and 150 rpm with a final
cell density of OD600 5.0 (1 mL 1 OD600 is approximate 0.32 mg dry cell
weight, thus 20 mL OD600 is equal to 32 mg DCW). Samples were taken
regularly for HPLC analysis. The conversion rate of the product was
calculated as the ratio of product to the substrate, while the production
rate was calculated as the amounts of product (g) produced by per g dry
cell biomass per hour per liter (g/L·h·g biomass).
In this study, we found that the hexitol galactitol (also named as
dulcitol) does not possess the cis D-erythro, but D-lyxo configuration can
also be acted by genera of Acetobacter sp. and Gluconobacter sp. strains.
The enzyme was evidenced to be a PQQ-dependent membrane-bound
dehydrogenase. Both of the hydroxyl groups on C-3 and C-5 can be
oxidized simultaneously by PQQ-dependent membrane-bound dehy-
drogenase from Gluconobacter and Acetobacter genera, with L-xylo-3-
hexulose (PubChem CID: 18392540, also alternative as D-lyxo-4-hex-
ulose) and D-tagatose as products (Fig. 1). Though D-threitol, xylitol,
all these three sugar alcohols cannot be oxidized by PQQ-dependent
membrane-bound dehydrogenase from Gluconobacter and Acetobacter
genera (Fig. S1b).This galactitol to 3-ketose L-xylo-3-hexulose conver-
sion by PQQ-dependent membrane-bound dehydrogenases may re-
present an exception to Bertrand Hudson's rule, instead of the exten-
sion.
2.5. Bioremoval of residual galactitol and D-tagatose by yeast strains
The G. cerinus X512 strains were first cultured in a 250 mL baffled
shake flask containing 20 g/L yeast extract, 5 g/L tryptone, 50 g/L
glucose, and 15 g/L calcium carbonate for 72 h at 30 °C and 200 rpm.
After cultivation, the cells were harvested by centrifugation at 10,000 g
for 10 min, washed twice with sterilized PBS buffer (10 mM, pH 6.0),
and used for the biotransformation of galactitol (20 g/L) in 50 mL re-
action mixture at 30 °C, and 200 rpm for 120 h with a final cell density
of OD600 5.0. Then the biotransformation liquid was centrifuged, and
the clear supernatant was filtered (0.22 μm membrane) to eliminate
residual cells. Different yeast strains were separately inoculated into the
test tubes containing 5 mL clear biotransformation liquid and cultivated
at 30 °C. Samples were collected regularly to analyze using the HPLC to
determine which yeast strain can completely exhaust galactitol and
tagatose but not the unknown product. Once galactitol and tagatose but
not the unknown product was completely exhausted, the yeast strains
were employed to biodegrade galactitol and tagatose in 250 mL flasks
containing 50 mL biotransformation liquid and cultivated at 30 °C.
When galactitol and tagatose were completely exhausted, the yeast cells
were eliminated by centrifugation, and the clear supernatant was de-
colored and subjected to ion-exchange chromatography by activated
carbon absorption and anion and cation exchange resins. The unknown
product was then collected by HPLC and concentrated by rotary eva-
poration at 50 °C. The resulting purified compound was identified by
the sub-sequential methods.
2. Materials and methods
2.1. Materials
Sugars or sugar alcohols including galactitol, erythritol,
thrulose, D-threitol, xylitol, D-xylulose, D-tagatose, L-tagatose, D-sorLb-ietroyl-,
were purchased from Merck & CoDI-nmca. nonriTtoolk,yoanCdhenmuicclaelaIsneduBsetnryzo(nTaCsIe,
D-arabitol, L-arabitol, L-fucitol,
Japan). NAD, NADH, NADP, NADPH, PQQ, coomassie brilliant blue R-
250, and antibiotics were provided by Sangon Biotech (Shanghai,
China). All other reagents or chemicals used were of high-purity grade.
2.2. Strains, media, and culture conditions
Microorganisms used in this work are listed in Table 1. E. coli strains
ampicillin (100 mg·L−1) or kanamycin (50 mg·L−1). Acetobacter or
Gluconobacter strains were aerobically grown at 30 °C and 200 rpm in a
complex medium comprising 15 g·L−1 yeast extract, 3 g·L−1 tryptone,
and 50 g·L−1 glucose (15 g·L−1 calcium carbonate was added when
necessary). When required, sugar alcohols such as galactitol, L-fucitol,
D-sorbitol, or mannitol were used as carbon and energy sources. Yeast
2.6. Identification of the unknown product
Various methods were applied to identify the unknown compound
produced from galactitol by acetic acid bacteria. First, we excluded the
unknown compound L-galactose, D-galactose, L-tagatose, or D-tagatose,
which C1, C6, C2, or C5 position was dehydrogenated separately.
2