Cyclic Peptides
FULL PAPER
(MALDI) with an Ultraflex Tof/Tof instrument (Bruker, Germany) oper-
ated in positive and reflectron mode. a-Cyano-4-hydroxycinnamic acid
was used as matrix and the instrument was calibrated using matrix ions.
All electrospray mass spectra were acquired by using a Bruker Daltonics
BioAPEX-94e superconducting 9.4 T FTICR mass spectrometer (Bruker
Daltonics, Billerica, MA) in broadband mode. A home-built apparatus
controlled the direct infusion of sample. The sample was delivered using
a helium gas container at a pressure of 1.3 bar, pushing the sample
through a 30 cm fused silica capillary of inner diameter 20 mm. The
sample end of the capillary was lowered into the sample tube inside the
pressurized container and the electrospray end was coated by a conduct-
ing graphite/polymer layer and connected to ground.[43,44] No sheath flow
or nebulizing gas was used and the flow rate was approximately
100 nLminꢀ1. The ion source was coupled to an Analytica atmosphere/
vacuum interface (Analytica of Branford, CT) and a potential difference
of 2–4 kV was applied across a distance of approximately 5 mm between
the spraying needle and the inlet capillary. Infrared spectra were ob-
tained from a Perkin–Elmer 1760 IR FT spectrometer. CD spectra were
measured with a Jasco J-810 spectropolarimeter (c=0.1 mm, 248C). UV
spectra were recorded on a Varian Cary 3 Bio spectrophotometer. X-ray
mate (1.3 mL, 10 mmol) were added and stirring was continued for
15 min. All of the H-b-Ala-b-Ala-OBzl·TFA obtained before was added
and the reaction mixture was stirred for 3 d at room temperature. The
solvent was evaporated and the residue was purified by flash chromatog-
raphy (CH2Cl2/CH3OH/AcOH 90:8:2). The linear tetrapeptide 3 was ob-
tained as colorless solid (3.12 g, 6.3 mmol, 63%). Rf =0.36 (CHCl3/
CH3OH/AcOH 90:8:2); 1H NMR (500 MHz, CDCl3): d = 1.42 (s, 9H,
Boc), 1.86 (brs, 4H, CH2), 2.34 (brs, 6H, CH2), 3.51 (m, 6H, CH2), 5.13
(s, 2H, CH2-Bzl), 5.33 (brs, 1H, NH), 6.52 (brs, 1H, NH), 6.68 (m, 2H,
NH), 7.32–7.39 (m, 5H, Bzl).
Cyclo(b-Ala)4 (4): Boc-(b-Ala)4-OBzl (3) (1.23 g, 2.50 mmol) and 10%
Pd/C (120 mg) were added to a mixture of THF and H2O(2:1, 150 mL)
and hydrogenated for 12 h at atmospheric pressure. Control of the reac-
tion by TLC (Boc-(b-Ala)4-OBzl, Rf =0.6, Boc-(b-Ala)4-OH, Rf =0.3,
CHCl3/CH3OH/AcOH 20:4:1) revealed the completeness of the depro-
tection. Pd/C was removed by filtration and the solvent was evaporated.
Boc-(b-Ala)4-OH was obtained as a colorless solid and further used with-
out purification (991 mg, 2.46 mmol, 98%).
Boc-(b-Ala)4-OH (402 mg, 1.0 mmol) was dissolved in DMF (100 mL)
and the solution was cooled under an atmosphere of argon to 08C. Penta-
fluorophenol (193 mg, 1.05 mmol) and DIEA (18 mL, 1.1 mmol) were
added. The reaction mixture was allowed to warm to room temperature
and stirred for further 16 h. The DMF was evaporated and the residue
was taken up in dichloromethane and washed with 1m HCl and brine.
The solvent was evaporated to give the activated ester as a colorless
solid.
Crystallographic Analysis was carried out on
a Bruker-Nonius kap-
paCCD diffractometer. For TLC, Alugram SIL G/UV254 silica sheets
from Macherey–Nagel were used. Flash Chromatography was carried out
on silica gel (35–70 mm) from Millipore Corp. Melting points were deter-
mined with a melting point apparatus SMP 10 from Stuart Scientific/
Bibby Sterilin Ltd. and are uncorrected.
The Fmoc-b3-amino acid derivatives Fmoc-b3hGlu(OtBu)-OAll, Fmoc-
b3hLeu-OH, Fmoc-b3hLys(Boc)-OAll, Fmoc-b3hPhe-OH, Fmoc-b3hVal-
OH were prepared via Arndt–Eistert homologation as described in refer-
ences.[18,19] The Wolff rearrangement to the carboxylic acids was facilitat-
ed with a High Intensity Ultrasonic Processor VCX 500 from Sonics Ma-
terials Inc.
This intermediate was deprotected by stirring for 1 h at 08C and subse-
quently for 1 h at room temperature in a mixture of CH2Cl2 and TFA
(1:1, 2 mL). After evaporation the residue was dissolved in dry THF
(20 mL) and was slowly added via syringe pump over 8 h to a mixture of
DIEA (260 mL, 1.6 mmol) in dry THF (400 mL) at 608C. The stirring was
continued for further 24 h at room temperature. The resulting precipitate
H-b-Ala-OBzl·HCl: H-b-Ala-OH (8.90 g, 100 mmol), benzyl alcohol
(50 mL) and chlorotrimethylsilane (20 mL) were heated to 1008C for 4 h.
The reaction mixture was cooled to room temperature and was poured
into diethyl ether (2 L) and subsequently cooled in an ice bath for 24 h.
The resulting precipitate was isolated by filtration. The benzyl protected
b-alanine was obtained as hydrochloric salt (20.5 g, 95 mmol, 95%) and
used without further purification.
was filtered and washed with THF to give cyclic b-tetrapeptide 4
1
(164 mg, 0.58 mmol, 58%). H NMR (500 MHz, D2O): d = 2.28 (dd, 8H,
3J=5.5 Hz; CH2), 3.32 (brq, 8H, 3J=5.5 Hz; CH2), 7.92 (brs, 4H; NH);
13C NMR (125 MHz, D2O): d = 174.5 (C=O), 35.8 (CH2), 35.6 (CH2).
Colorless crystals of 4 suitable for X-ray crystallography were grown
from a mixture of MeOH/H2Oat room temperature (Table 1).
CCDC-264893 contains the supplementary crystallographic data for this
paper. These data can be obtained free of charge from The Cambridge
Boc-b-Ala-b-Ala-OBzl (2): Boc-b-Ala-OH (1) (7.57 g, 40.0 mmol) was
dissolved in dry THF (400 mL) under an argon atmosphere. The solution
was cooled to ꢀ158C and TEA (11.7 mL, 83 mmol) and isobutyl chloro-
formate (5.2 mL, 40.0 mmol) were added. The mixture was stirred for
15 min and H-b-Ala-OBzl (8.62 g, 40.0 mmol) was added. The reaction
mixture was allowed to warm to room temperature and was stirred for
3 d. The solvent was evaporated and the residue was dissolved in ethyl
acetate (800 mL). The organic phase was washed successively with H2O,
1n citric acid, H2O, sat. NaHCO3 and brine, subsequently dried with an-
hydrous MgSO4 and the solvent was evaporated. The residue was recrys-
tallized from ethyl acetate and heptane to give dipeptide 2 as colorless
crystals (11.4 g, 3.24 mmol, 81%). 1H NMR (500 MHz, CDCl3): d = 1.45
(s, 9H; Boc), 2.35 (t, 2H, J=7.5 Hz; CH2), 2.61 (t, 2H, J=7.5 Hz; CH2),
3.40 (q, 2H, J=7.5 Hz; CH2), 3.56 (q, 2H, J=7.5 Hz; CH2), 5.16 (s, 3H;
CH2-Bzl, NH), 6.08 (s, 1H; NH), 7.2–7.5 (m, 5H; Bzl).
(S)-3-(9H-Fluoren-9-ylmethoxycarbonylamino)-hexanedioic acid 1-allyl
ester 6-tert-butyl ester (Fmoc-b3hGlu(OtBu)-OAll) (7): Fmoc-Glu-
(OtBu)-CHN2 (5)[18] (660 mg, 1.47 mmol) was dissolved in dry THF
(10 mL) and allyl alcohol (0.15 mL, 2.25 mmol) was added. The mixture
was cooled to ꢀ158C and
a solution of silver benzoate (34 mg,
0.15 mmol) in NMM (0.33 mL, 3 mmol) was added. The reaction mixture
was stirred and warmed to room temperature. After 5 h the mixture was
filtered through a pad of Celite and the THF was removed under re-
duced pressure. The residue was dissolved in ethyl acetate and succes-
sively washed with saturated NaHCO3, water and 5% HCl. After drying
with MgSO4 the solvent was evaporated under reduced pressure. The res-
idue was purified by flash chromatography (pentane/ethyl acetate 4:1)
and yielded allyl ester 7 (456 mg, 0.98 mmol, 67%). Rf =0.68 (pentane/
ethyl acetate 3:1); 1H NMR (500 MHz, CDCl3): d = 1.44 (s, 9H; tBu),
1.86 (m, 2H; CH2), 2.31 (m, 2H; CH2COOAll), 2.61 (d, 2H, 2J=5 Hz;
Boc-(b-Ala)4-OBzl (3): This compound was prepared previously by a
similar method.[45] Boc-b-Ala-b-Ala-OBzl (2) (3.52 g, 10.0 mmol) was
added to a mixture of TFA and CH2Cl2 (1:1, 10 mL) at 08C and the reac-
tion mixture was stirred for 1 h at 08C and additionally for 1 h at room
temperature. The solvent was evaporated and b-Ala-b-Ala-OBzl·TFA
was obtained and used without further purification. Boc-b-Ala-b-Ala-
OBzl (2) (3.52 g, 10.0 mmol) and 10% Pd/C (0.35 g) were added to a
mixture of THF and CH3OH (1:1, 200 mL) and hydrogenated for 12 h at
atmospheric pressure. Control of the reaction by TLC (Boc-b-Ala-b-Ala-
OBzl, Rf =0.73, Boc-b-Ala-b-Ala-OH, Rf =0.38, CHCl3/CH3OH/AcOH
90:8:2) revealed the completeness of the deprotection. Pd/C was re-
moved by filtration and the solvent was evaporated. The residue was dis-
solved in dry THF (100 mL) under an argon atmosphere and the solution
was cooled to ꢀ158C. TEA (4.68 mL, 33 mmol) and isobutyl chlorofor-
3
CH2COOtBu), 4.00 (m, 1H; CHNH), 4.20 (t, 1H, J=7.5 Hz; CHCH2O),
2
4.37 (m, 2H; CHCH2O), 4.60 (d, 2H, J=6 Hz; CHOCH2), 5.23 (dd, 1H,
J=10.5, 1 Hz; CH=CH2), 5.30–5.35 (m, 3H; CH=CH2, NH), 5.90 (m,
1H; CH=CH2), 7.31 (dt, 2H, 3J=7.5, 4J=1 Hz; Fmoc), 7.40 (t, 2H, 3J=
7.5 Hz; Fmoc), 7.59 (d, 2H, 3J=8 Hz; Fmoc), 7.76 (d, 2H, 3J=7.5 Hz;
Fmoc); 13C NMR (100.5 MHz, CDCl3): d = 28.1 (tBu), 29.2, 32.3, 39.1,
47.3 (CH), 47.9 (CH), 65.4 (CH2), 66.7 (CH2), 80.6 (tBu), 118.6 (CH2
allyl), 119.9, 125.1, 127.0, 127.7 (4CH Fmoc), 131.8 (CH allyl), 141.3,
143.9 (2C Fmoc), 155.8 (OCONH), 171.0 (CO), 172.5 (CO); IR (KBr):
n˜ = 3363 (m), 2975 (m), 1734 (s), 1689 (s), 1521 (s), 1452 (m), 1368 (m),
1246 (m), 1155 (s), 761 (m), 739 cmꢀ1 (m); HR ESI-MS: m/z: calcd for
C28H33NO6: 479.231; found: 480.238 [M+H]+, 502.220 [M+Na]+.
Chem. Eur. J. 2005, 11, 6145 – 6158
ꢀ 2005 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
6155