Microwave-Assisted Synthesis of Thiophene Fluorophores
A R T I C L E S
procedures have been described to make them biocompatible.
The development of a sophisticated QD technology has allowed
their application to many biological problems, including in ViVo
experiments with NIR fluorescent QDs.6 QDs have demonstrated
superior performance in applications requiring single particle
imaging.6,7 However, there are serious problems with the
reproducibility in the quality of biocoated QDs, and reliable
tests for the quality of surface coating have not yet been
established.1c Moreover, the cytotoxicity of QDs in the intra-
cellular metabolism is still a debated question.8
Another class of fluorescent dyes that have been extensively
studied in the last years is that of conjugated polymer electrolytes
for the detection of molecules of biological interest or biologi-
cally important ions.9 Thanks to positively charged pendant
groups these polymers can coordinate oppositely charged
biological molecules via electrostatic interactions, in particular
DNA, while the fluorescence emission of the conjugated
backbone is sensitive even to very minor environmental changes.
In the presence of polyelectrolytes of biological interest,
conjugated polyelectrolytes act as optical transducers of bio-
chemical events by means of changes in fluorescence. Several
investigations have concerned the interactions of polythiophene
polyelectrolytes with nucleic acids and proteins for the realiza-
tion of homogeneous biosensors for real-time sequence-specific
detection.9a Polythiophene electrolytes have also been used for
the hystological staining of amyloid deposits in ex vivo tissue
samples associated with several pathogenic states.10 However,
the methods based on conjugated polyelectrolytes suffer from
the fact that the nature of the complexes they form with
biopolymers is poorly known11 and that in biological fluids other
charged macromolecules are generally present besides those of
interest, which might contribute to the observed changes in
fluorescence.
in particularshave demonstrated high performance levels in
diagnostic applications such as flow cytometry and immun-
ostaining, in the imaging of biological compounds, in DNA
labeling, and in FRET experiments.12 However, molecular
fluorescent dyes present limitations in photostability and
sensitivity preventing, for example, the long-term imaging of
stained and living cells. Having generally narrow bandwidths
and small Stokes shifts,1c another inconvenience is the limited
possibility for multiplexing analysis, which requires irradiation
at a single wavelength and the simultaneous observation of the
emission of different fluorophores. Nevertheless the appeal of
molecular fluorophores lies in the possibility to enhance
performance by design and to introduce functional groups that
can react with target biocompounds even within living cells.
Being small molecules of a few nanometer size, they are ideal
candidates to penetrate live cells and illuminate them without
altering their metabolism. Owing to the resources of synthetic
chemistry, they could in principle be functionalized with almost
any functional group and shaped on demand for almost any
possible application. In other words, and paraphrasing the title
of a well know article from a pioneer in the field of semicon-
ductor oligo and polythiophenes,14 they are ideal fluorophores
a` la carte, i.e., custom fluorescence dyes to develop and
manufacture for the most diverse application areas. However,
new systematic studies are needed to renew the toolbox of
available molecular fluorophores and push farther their perfor-
mance. Unquestionably, the better the fluorophores, the easier
their manipulation and reproducibility, and the lower their cost,
then the better and more numerous the tests are that can be
performed.
Owing to the versatile chemistry of thiophene, its easy
functionalization, and the fluorescence properties of its
oligomers,15a we started a few years ago research aimed to
explore the possibility of functionalizing these compounds with
groups capable of covalently binding relevant biomolecules such
as DNA or monoclonal antibodies.15b-f These first attempts
having been successful, we have now started a more ambitious,
wide scope investigation aimed to transform the potentialities
into real advantages and original experiments. We wished, on
one hand, to control the reactivity of these dyes toward
compounds of biological importance by tuning the functional-
ization of the backbone in view of their use for selective site
binding to biocomponents within living cells and, on the other,
to enhance and orient their fluorescence properties toward
innovative technological applications.
Molecular fluorescent probesssmall organic molecules, the
prototype of which is fluorescein isothiocyanateshave been
employed for a long time as reporters of events of biological
interest.12 Significant improvements in their optical properties
have been achieved over the years. New molecular structures
are continuously being engineered.13 A few families of these
compoundssfluorescein and its derivatives and cyanine dyes,
(6) (a) Michalet, X.; Pinaud, F. F.; Bentolila, L. A.; Tsay, J. M.; Doose,
S.; Li, J. J.; Sundaresan, G.; Wu, A. M.; Gambhir, S. S.; Weiss, S.
Science 2005, 307, 538–544. (b) Gill, R.; Zayats, M.; Willner, I.
Angew. Chem., Int. Ed. 2008, 47, 7602–7625. (c) Medints, I. L.;
Tetsuo, H.; Goldman, U. E. R.; Mattoussi, H. Nat. Mater. 2005, 4,
436–4462. (d) Mahler, B.; Spinicelli, P.; Buil, S.; Quelin, X. Nat.
Mater. 2008, 7, 659–664. (e) Wu, X.; Liu, H.; Liu, J.; Haley, K. N.;
Treadway, J. A.; Larson, J. P.; Ge, N.; Peale, F.; Bruchez, M. P. Nat.
Biotechnol. 2002, 21, 41–46.
In this paper we report the rapid, efficient, cost-effective, and
clean synthesis of a new class of molecular fluorophores more
soluble under physiological conditions and more reactivite
toward monoclonal antibodies compared to previously described
thiophene fluorophores. An easy protocol for multiple labeling
of monoclonal antibodies was developed leading also to brightly
white emitting antibodies. The use of TFs in immunostaining
(7) Temirov, J. P.; Bradbury, A. R. M.; Werner, J. H. Anal. Chem. 2008,
80, 8642–8648.
(8) (a) Kim, B. Y. S.; Jiang, W.; Oreopoulos, J.; Yip, C. M.; Rutka, J. T.;
Chan, W. C. W. Nano Lett. 2008, 8, 3887–3892. (b) Chang, E.;
Thekkek, N.; Yu, W. W.; Colvin, V. L.; Drezek, R. Small 2006, 2,
1412–1417. (c) Jamieson, T.; Bakhshi, R.; Petrova, D.; Pocock, R.;
Imani, M.; Seifalian, A. M. Biomaterials 2007, 28, 4717–4732.
(9) (a) Ho, H. A.; Najari, A.; Leclerc, M. Acc. Chem. Res. 2008, 41, 168–
178. (b) Herland, A.; Thomsson, D.; Mirzov, O.; Scheblykin, I. G.;
Ingana¨s, O. J. Mater. Chem. 2008, 18, 126–132. (c) Liu, B.; Bazan,
G. C. Chem. Mater. 2004, 16, 4467–4476. (d) Thomas, S. W., III;
Joly, J. D.; Swager, T. M. Chem. ReV. 2007, 107, 1339–1386.
(10) Nilsson, K. P. R.; Hammarstro¨m, P.; Ahlgren, F.; Herland, A.; Schnell,
E. A.; Lindgren, M.; Westermark, G. T.; Ingana¨s, O. ChemBioChem
2006, 7, 1096–1104.
¨
¨
(13) (a) Ozhalici-Unal, H.; Pow, C. L.; Marks, S. A.; Jesper, L. D.; Silva,
G. L.; Shank, N. I.; Jones, E. W.; Burnette, J. M.; Berget, P. B.;
Armitage, B. A. J. Am. Chem. Soc. 2008, 130, 12620–12621. (b)
Richard, J. A.; Massonneau, M.; Renard, P. Y.; Romieu, A. Org. Lett.
2008, 10, 4175–4178. (c) Mottram, L. F.; Boonyarattanakalin, S.;
Kovel, R. E.; Peterson, B. R. Org. Lett. 2006, 8, 581–584. (d) Peneva,
K.; Mihov, G.; Herrmann, A.; Zarrabi, N.; Bo¨rsch, M.; Duncan, T. M.;
Mu¨llen, K. J. Am. Chem. Soc. 2008, 130, 5398–5399. (e) Kim, D. S.;
Ahn, K. H. J. Org. Chem. 2008, 73, 6831–6834. (f) Umezawa, K.;
Nakamura, Y.; Makino, H.; Citterio, D.; Suzuki, K. J. Am. Chem.
Soc. 2008, 130, 1550–1551. (g) Li, L.; Han, J.; Nguyen, B.; Burgess,
K. J. Org. Chem. 2008, 73, 1963–1970.
(11) Chi, C.; Chworos, A.; Zhang, J.; Mikhailovsky, A.; Bazan, G. C. AdV.
Funct. Mater. 2008, 18, 3606–3612.
(12) Haugland, R. P. A Guide to Fluorescent Probes and Labeling
Technologies; Molecular Probes Inc.: Eugene, OR, 2005.
(14) Garnier, F. Acc. Chem. Res. 1999, 32, 209–215.
9
J. AM. CHEM. SOC. VOL. 131, NO. 31, 2009 10893