Z. Xie et al. / Bioorg. Med. Chem. Lett. xxx (2015) xxx–xxx
3
COOCH3
COOCH3
COOCH3
CHO
COOCH3
Boc
Boc
a
b
d
c
N
N
CHO
R
R
N
H
N
H
N
H
N
H
HN
R
X
X
X
X
X=H 71~74
X=F 75~77
X=H 64~67
X=F 68~70
X=H 28
X=F 29
X=H 57~60
X=F 61~63
H
H
N
NH
N
NH
O
O
COOCH3
COOH
O
O
Boc
Boc
e
H
N
g
f
N
N
R
R
R
N
H
N
H
X
N
H
X
X
X=H 78~81
X=F 82~84
X=H 1~4
X=F 5~7
X=H 85~88
X=F 89~91
Scheme 2. Synthesis route of targeted compounds 1–7. Reagents and conditions: (a) 10a/MeOH, RNH2 (Methylamine, Propylamine, Isopropylamine or N-butyl amine)
(5 equiv), AcOH, reflux, 1 h; (b) NaBH4 (5 equiv), MeOH, room temperature, 5–8 h, 40–65%; (c) DCM, Boc2O (1.1 equiv), room temperature, overnight, 45–62%; (d) POCl3
(2 equiv), DMF, 35 °C, 2–3 h, 42–55%; (e) NaClO2 (5 equiv), 3-methyl-1-butene (1.8 equiv), 1 M NaH2PO3 (1.5 equiv), THF, 0 °C, 6 h, 36–48%; (f) DMF, Et3N (2 equiv), HBTU
(1.1 equiv), N2H4 (5 equiv), 2 h, 70 °C, 44–62%; (g) DCM, TFA, room temperature, 15–17 h, 50–71%.
CO2Me
CO2Me
CO2Me
CO2Me
CH3
CO2Me
a
b
c
d
e
f
N
H
N
H
N
H
H
N
Br
NO2
N
H
Br
N
R
OHC
R
37~40
30
33~36
32
31
H
H
N
N
NH
CO2Me
O
NH
CO2Me
O
CO2Me
O
O
CHO
COOH
g
h
i
j
N
H
Boc
N
N
H
Boc
N
N
H
N
H
Boc
N
Boc
N
N
H
H
N
R
R
R
R
R
8~11
49~52
41~44
45~48
53~56
Scheme 3. Synthesis route of targeted compounds 8–11. Reagents and conditions: (a) DMFDMA (3 equiv), DMF, 120 °C, 9–10 h; (b) MeOH, AcOH, Fe, reflux, 15 h, 63.0%;
(c) 4-formylphenylboronicacid (1.5 equiv), H2O, MeOH, toluene, LiCl (3 equiv), Na2CO3 (2.5 equiv), Pd(PPh3)4, reflux, 9–10 h, 66.6%; (d) RNH2 (Methylamine, Propylamine,
Isopropylamine or N-butyl amine) (10 equiv), MeOH, AcOH, reflux, 1–2 h, 50.6–82.8%; (e) MeOH, <10 °C, NaBH4 (3 equiv), room temperature, 2–3 h, 70.3–86.1%; (f) Boc2O
(1.1 equiv), CH2Cl2, 0 °C ? room temperature, 1–2 h, 45.4–89.2%; (g) POCl3, DMF, NaOH, H2O, <10 ? 35 °C, 2–3 h, 40.7–71.4%; (h) KMnO4 (3 equiv), acetone, <35 °C, 3–4 h,
17.1–27.4%; (i) Et3N (2 equiv), HBTU (1.1 equiv), NH2NH2, DMF, 70 °C, 0.5 h, 11.1–19.0%; (j) TFA, CH2Cl2, room temperature, 15–17 h, 57.9–81.2%.
Cyclization of 78–84 using HBTU afforded 85–91 which were
deprotected of Boc to give products 1–7.
AG014699. In addition, we found that compound 7 containing
N-butyl amine was more potent than compound 5 containing
methylamine and compound 6 containing propylamine, indicating
that the size of N-butyl amine group was more optimal for com-
pounds occupying the hydrophobic cavity of PARP-1 enzyme.
Compounds 8–11, containing the aromatic side chain at 6-posi-
tion of indole were designed and synthesized to probe the possibil-
ity of bisamides flip-binding (Fig. 3). The results have shown that
these compounds exhibited low to moderate activities toward
PARP-1, but were more potent than their counterparts (compounds
1–4). Among them, contained N-butyl amine compound 11 had the
most potency with an IC50 value of 35.4 nM. All results indicated
that the flipped structure could form more effective binding with
PARP-1 and N-butyl amine remained the more optimal basic group
in compounds.
Finally, all compounds were evaluated for their anticancer
activity using wild type breast cancer MCF-7 cells and human
breast cancer MDA-MB-436 cells carrying natural BRCA1 mutations
in comparison with AG014699. As summarized in Table 1, the
BRCA1-deficient MDA-MB-436 cells were hypersensitive to the
PARP-1 inhibition, therefore, higher potencies were observed for
most tested compounds in this cell line in comparison with those
in wild type cells. Similar to the tendency of PARP-1 inhibitory
activity in our compounds, almost compounds with big size basic
groups (Isopropylamine, N-butyl amine) had higher potencies in
both cells compared to those with small size basic groups (Methy-
lamine, Propylamine). Surprisingly, though compound 7 was the
The preparation of compounds 8–11 is shown in Scheme 3.
Obtained by Leimgruber–Batcho indole synthesis from 30, 31
was reacted with 4-formylphenylboronic acid by Suzuki reaction
to afford 32 which was condensed with secondary amines to give
33–36. 33–36 were reduced and the resulting 37–40 were then
protected with Boc to give 41–44. The formyl group was intro-
duced to the 3-position of 41–44 by Vilsmeier reaction to give
45–48 which were oxidized using KMnO4 to afford 49–52. Finally,
the products were obtained by cyclization reaction and removal of
Boc.
The PARP-1 enzyme inhibitory activities of all compounds are
shown in Table 1, compounds 1–4 containing different size basic
groups (Methylamine, Propylamine, Isopropylamine, N-butyl
amine) attached to the aromatic side chains at 2-position of indole
displayed weak activity against PARP-1 in comparison with refer-
ence compound AG014699. Among them, compound 4 was the
most potent with an IC50 value of 249.7 nM, indicating that N-butyl
amine is a more effective substituent group for PARP-1 enzyme
inhibitory activity. Further research, considering that fluorine
played a critical role in improving activity in several clinically pro-
ven PARP-1 inhibitors including AG014699, BMN-673 et al.,14 it
was introduced to 6-position of indole of compounds 1, 2 and 4.
The potency of compounds with fluorine substituent 5–7 were
increased markedly and compound 7 showed an IC50 value of
2.4 nM, which was only about three times less potent than