Mar-Apr 2007 Synthesis and Anti-HIV-1 Activity of 1,3-phenylene-bis uracil Analogues of MKC-442
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2,4(1H,3H)-dione (7). Yield 1.15 g (23%); white foam; H nmr
(deuteriochloro-form): δ 1.03 (t, 6H, J = 7.3 Hz, 2 × CH3 at C-
5), 1.15 (t, 6H, J = 7.0 Hz, 2 × CH3CH2), 2.40-2.45 (m, 4H, 2 ×
CH2CH3 at C-5), 3.50-3.63 (m, 4H, 2 × OCH2CH3), 4.14 (s, 4H,
2 × CH2Ar), 5.09 (s, 4H, NCH2O), 6.90-7.30 (m, 4H, Ar), 10.06
(s, 2H, 2 × NH); 13C nmr (deuteriochloroform): δ 13.69 (2 × CH3
at C-5), 14.95 (2 × CH3CH2), 19.08 (2 × CH2CH3), 33.18 (2 ×
CH2Ar), 64.94 (2 × OCH2CH3), 72.61 (NCH2O), 117.05 (C-5),
126.08, 126.36, 130.02, 136.48 (Carom), 148.53 (2 × C-6), 151.96
(2 × CO), 163.41(2 × CO). Anal. Calcd. for (C26H34N4O6 ×
0.5H2O): C, 61.52; H, 6.95; N, 11.12. Found: C, 61.79; H, 6.95;
N, 10.97.
(2 × CH3), 18.25, 19.02 (2 × CH2CH3), 33.27, 35.81 (2 ×
CH2Ar), 70.36 (OCH2), 72.52 (NCH2O), 113.56, 117.03 (2 × C-
5), 117.66 (CH2=CH), 133.51 (CH=CH2), 126.56, 129.70,
136.05, 136.71 (Carom), 148.25, 148.79 (2 × C-6), 152.08,
152.30, 163.75, 164.77 (4 × CO). Anal. Calcd. for (C24H28N4O5):
C, 63.70; H, 6.24; N, 12.38, Found: C, 63.45; H, 6.20; N, 12.11.
6-(3-((2-(dimethylamino)-5-ethyl-1,6-dihydro-6-oxopyrim-
idin-4-yl)methyl)benzyl)-2-(dimethylamino)-5-ethylpyrimid-
in-4(3H)-one (11). The β-ketoester 2 (1.23 g, 3.15 mmoles) was
dissolved in EtONa (Na, 0.28g, 12.6 mmoles in 50 ml absolute
ethanol). N,N-Dimethylguanidinium sulphate (2.34 g, 8.6
mmoles) was added and the reaction mixture was refluxed for 3
days, then cooled and the mixture was filtered, and ethanol was
removed to half volume in vacuo. The residue was poured onto
water and extracted with chloroform. The organic layer was
washed with water (2 × 50 ml), dried over MgSO4 and
evaporated in vacuo. The residue was purified by silica gel
column chromatography using chloroform:methanol (95:5, v/v)
5-Ethyl-1-ethoxymethyl-6-{3-[(5-ethyl-2,6-dioxopyrimidin-
4(1H,3H)-yl)methyl]benzyl}pyrimidine-2,4(1H,3H)-dione (8).
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Yield 0.48 g (11%); oil; H nmr (deuteriochloroform): δ 1.21-
1.28 (m, 9H, 3 × CH3), 2.03-2.10 (m, 4H, 2 × CH2CH3 at C-5),
3.53, 3.56 (2s, 4H, 2 × CH2Ar), 3.57-3.60 (m, 2H, OCH2CH3),
4.69 (s, 2H, NCH2O), 7.06-7.31 (m, 4H, Ar), 9.82, 10.08, 10.16
(3s, 3H, 3 × NH); 13C nmr (deuteriochloroform): δ 13.55, 13.62,
14.94 (3 × CH3), 18.14, 18.99 (2 × CH2CH3), 33.13, 35.70 (2 ×
CH2Ph), 63.73 (OCH2CH3), 69.71 (NCH2O), 113.45, 116.87 (2 ×
C-5), 126.40, 127.20, 127.39, 129.69, 136.11, 136.52 (Carom),
147.99, 148.75 (2 × C-6), 151.94, 163.54, 164.58, 170.90 (4 ×
CO).
General Procedure for the Synthesis of Compounds 9 and
10. Compound 6 (0.38 g, 1.0 mmole) was dissolved in 30 ml dry
CH3CN under nitrogen and BSA (1.74 ml, 3.5 mmoles) was
added. The reaction was cooled to −30ο and TMS-triflate
(trimethylsilyl trifluoromethanesulfonate, 0.18 ml, 1.0 mmole)
was added dropwise followed by addition of bis(allyloxy)-
methane (0.76 ml, 4.0 mmoles). The reaction mixture was stirred
at room temperature for 2 days and quenched by a saturated
solution of NaHCO3 (10 ml). CH3CN was evaporated under
reduced pressure and the residue was extracted with chloroform
(2 × 50 ml) and dried over MgSO4. The solvent was evaporated
under reduced pressure and the residue was purified by silica gel
column chromatography using chloroform:methanol (9:1, v/v) to
give compounds 9 and 10.
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to give compound 11. Yield 0.25 g (18%); mp: 286-288ο; H
nmr (dimethyl sulfoxide-d6): δ 0.78 (t, 6H, J = 7.1 Hz, 2 ×
CH3CH2), 2.21-2.37 (m, 4H, 2 × CH2CH3), 2.87 (s, 12H, 4 ×
NCH3), 3.58 (s, 4H, 2 × CH2Ar), 6.96-7.16 (m, 4H, Ar), 11.10
(s, 2H, 2 × NH); 13C nmr (dimethyl sulfoxide-d6): δ 13.76 (2 ×
CH3), 17.94 (2 × CH2CH3), 36.77 (4 × NCH3), 43.35 (2 ×
CH2Ph), 111.61 (C-5), 126.43, 127.83, 130.43, 138.84 (Carom),
152.56 (2 × C-6), 161.67 (2 × CO), 164.09 (2 × C-2). HRms
(MALDI, peak matching): m/z 437.2642 [C24H32N6O2 + H+],
requires m/z 437.2660. Anal. Calcd. for (C24H32N6O2
×
0.25H2O): C, 65.36; H, 7.43; N, 19.05. Found: C, 65.32, H, 7.31;
N, 18.63.
General Procedure for the Synthesis of Compounds 12a,b
and 13a,b. Compound 4 (0.81 g, 2 mmoles) was dissolved in 20
ml dry DMF, K2CO3 (0.55 g, 4 mmoles) and isopropyl bromide
or isobutyl bromide (4.8 mmoles) were added, the reaction
mixture was stirred at room temperature for 3 days. The DMF
was evaporated under reduced pressure, and the residue was
chromatographed using ethyl acetate:petroleum ether (60-80ο)
(1:1, v/v) to afford 12a,b and 13a,b.
5-Ethyl-1-allyloxymethyl-6-{3-[(5-ethyl-3-allyloxymethyl-
2,6-dioxopyrimidin-4(1H,3H)-yl)methyl]benzyl}pyrimidine-
2,4(1H,3H)-dione (9). Yield 0.18 g (34%); white foam; H nmr
5-Ethyl-2-isopropylsulfanyl-6-{3-[(5-ethyl-2-isopropylsulf-
anyl-pyrimidin-4(1H,3H)-yl)methyl]benzyl}pyrimidine-2,4-
1
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(1H,3H)-one (12a). Yield 0.3 g (33%); mp 198-200ο; H nmr
(deuteriochloro-form): δ 1.04 (t, 6H, J = 7.3 Hz, 2 × CH3CH2),
2.43-2.48 (m, 4H, 2 × CH2CH3), 4.09 (s, 4H, 2 × CH2Ar), 4.10-
4,13 (m, 4 H, 2 × OCH2), 5.12 (s, 4H, NCH2O), 5.15 (m, 2H,
CH2=CH), 5.19 (m, 2H, CH2=CH), 5.82-5.88 (m, 2H, 2 ×
CH=CH2), 7.02-7.31 (m, 4H, Ar), 10.16 (s, 2H, 2 × NH); 13C
nmr (deuteriochloroform): δ 13.71 (2 × CH3), 19.08 (2 ×
CH2CH3), 33.23 (2 × CH2Ar), 70.45 (OCH2), 72.41 (NCH2O),
117.76 (C-5), 117.76 (CH2=CH), 133.45 (CH=CH2), 126.13,
126.39, 130.05, 136.41 (Carom), 148.40 (C-6), 151.99, 163.41 (2
× CO). HRms (MALDI, peak matching): m/z 545.2364
[C28H34N4O6 + Na+], requires m/z 545.2371. Anal. Calcd. for
(C28H34N4O6 × 0.25H2O): C, 63.80; H, 6.60; N, 10.63. Found: C,
63.60; H, 6.47; N, 10.57.
(dimethyl sulfoxide-d6): δ 0.93 (t, 6H, J = 7.2 Hz, 2 × CH3CH2),
1.22 (d, 12H, J = 6.7 Hz, 4 × CH3[Pri]), 2.41-2.48 (m, 4H, 2 ×
CH2CH3), 3.69-3.76 (m, 2H, 2 × SCH), 3.80 (s, 4H, 2 × CH2Ar),
7.09-7.20 (m, 4H, Ar), 12.43 (s, 2H, 2 × NH); 13C (dimethyl
sulfoxide-d6): δ 13.02 (2 × CH3), 18.07 (2 × CH2CH3), 22.34 (4
× CH3[Pri]), 35.42 (2 × SCH), 40.77 (2 × CH2Ar), 120.80 (C-5),
126.82, 128.00, 129.28, 138.38 (Carom), 156.73 (2 × C-6),
159.99, 162.71 (C-2 and C-4). HRms (MALDI, peak matching):
m/z 521.1994 [C26H34N4O2S2 + Na+], requires m/z = 521.2015.
5-Ethyl-2-isopropylsulfanyl-4-isopropyloxy-6-{3-[(5-ethyl-
2-isopropylsulfanyl-4-isopropyloxy-pyrimidin-4(1H,3H)-yl)-
methyl]benzyl}pyrimidine-2,4(1H,3H)-one (13a). Yield 0.2 g
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(19%); oil; H nmr (deuteriochloroform): δ 0.90-1.14 (m, 6H, 2
5-Ethyl-6-{3-[(5-ethyl-1-allyloxymethyl-2,6-dioxopyrimid-
in-4(1H,3H)-yl)methyl]benzyl}pyrimidine-2,4(1H,3H)-dione
(10). Yield 0.1 g (22%); foam; H nmr (deuteriochloroform): δ
× CH3CH2), 1.22-1.38 (m, 18H, 6 × CH3[Pri]), 2.44-2.59 (m, 4H,
2 × CH2CH3), 3.79-3.87 (m, 2H, 2 × SCH) 3.94 (s, 4H, 2 ×
CH2Ar), 5.30-5.38 (m, 1H, OCH), 7.05-7.26 (m, 4H, Ar), 12.10
(s, 1H, NH); 13C nmr (deuteriochloroform): δ 13.12, 13.16 (2 ×
CH3), 18.23, 18,67 (2 × CH2CH3), 21.88, 22.72, 23.03 (6 ×
CH3[Pri]), 35.56, 36.51 (2 × SCH), 40.33, 40.44 (2 × CH2Ar),
68.98 (OCH), 116.55, 122.01 (2 × C-5), 126.80, 126.92, 128.23,
129.54, 138.35, 138.60 (Carom), 156.46, 161.67 (2 × C-6),
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1.11-1.66 (m, 6H, 2 × CH3CH2), 2.34-2.38 (m, 4H, 2 ×
CH2CH3), 3.98, 4.09 (2s, 4H, 2 × CH2Ar), 4.13-4.18 (m, 2H,
OCH2CH), 5.20 (s, 2H, NCH2O), 5.33-5.36 (m, 2H, CH2=CH),
5.75-5.86 (m, 1H, CH=CH2), 7.05-7.32 (m, 4H, Ar), 9.96, 10.38
(2s, 2H, 2 × NH); 13C nmr (deuteriochloroform): δ 13.63, 13.70