12-(7-Nitrobenzo[c][1,2,5]oxadiazol-4-ylamino)dodecanoic acid (4)
eluted with hexane/ethyl acetate (1 : 2) to give the crude product,
which was dissolved in chloroform (10 mL). Pyridine (0.12 mL,
1.52 mmol) and bromoacetylbromide (0.13 mL, 1.52 mmol) were
added at 0 ◦C and the mixture was stirred for 4 h at room
temperature. The precipitates were filtered using celite pad and
the filtrate was concentrated in vacuo. The residue was purified
by silica gel column chromatography with hexane/ethyl acetate
(5 : 1) to give 6 as a dark orange solid (0.74 g, 0.88 mmol, 68%):1H
NMR (400 MHz; CDCl3) d 8.51 (d, J = 8.4 Hz, 1H), 6.18 (d,
J = 8.4 Hz, 1H), 5.30 (sext, J = 4.8 Hz, 1H), 4.45–4.24 (m, 2H),
4.20–4.16 (m, 2H), 3.85 (s, 2H), 3.49 (q, J = 12.8, 6.4 Hz, 2H),
2.34–2.31 (m, 4H), 1.81 (quint, J = 7.2 Hz, 2H), 1.61–1.45 (m, 4H),
1.29–1.25 (m, 42H), 0.88 (t, J = 6.4 Hz, 3H); 13C NMR (100 MHz,
CDCl3) d 172.9, 166.5, 166.2, 143.9, 143.6, 136.5, 122.5, 98.2, 68.2,
63.5, 61.4, 43.8, 33.6, 33.0, 31.5, 30.5, 29.3, 29.0, 28.0, 26.6, 25.0,
24.5, 22.3, 13.7; IR (neat) 3333, 3078, 2920, 2855, 1747, 1620,
1350, 1273, 1165, 1119, 1045 cm-1; MS (ESI, positive) m/z 863
([M+Na]+), 879 ([M+K]+); HRMS (ESI, positive) m/z calcd. for
C41H67BrN4O9 [M+Na]+: 861.3989, found: 861.3989.
To a solution of NaHCO3 (4.21 g, 50 mmol) in water (125 mL) was
added an ethanol solution (325 mL) of 12-aminododecanoic acid
(2.70 g, 12.5 mmol) at 37 ◦C and the mixture was stirred for 10 min.
Chloro-7-nitrobenzofurazan (5.02 g, 25 mmol) was added and
then the reaction mixture was stirred at 37 ◦C for overnight with
light shielding. The reaction was quenched by adding HCl (1 M,
56 mL) and the reaction mixture was extracted with chloroform.
The organic layer was washed with water, dried over anhydrous
sodium sulfate, and then concentrated. The residue was purified
by silica gel column chromatography with hexane/ethyl acetate
(20 : 1) to give 4 as an orange solid (2.65 g, 7.01 mmol, 56%):1H
NMR (400 MHz; CDCl3) d 8.51 (d, J = 8.8 Hz, 1H), 6.18 (d, J =
8.4 Hz, 1H), 3.48 (dd, J = 9.2, 15.2 Hz, 2H), 2.36 (t, J = 7.6 Hz, 2H),
1.83–1.47 (m, 4H), 1.30 (s, 14H); 13C NMR (75 MHz, CDCl3) d
178.5, 144.3, 143.9, 136.5, 124.2, 124.0, 98.5, 44.0, 33.7, 29.3, 29.1,
28.9, 28.5, 26.9, 24.6; IR (KBr) 3356, 3244, 2924, 2851, 1709, 1620,
1269, 1188, 1126 cm-1; MS (ESI, positive) m/z 379 ([M+H]+), 401
([M+Na]+), 417 ([M+K]+), 377 ([M - H]-); HRMS (ESI, positive)
m/z calcd. for C18H26N4O5 [M+Na]+: 401.1801, found: 401.1804.
Compound 8
A mixture of 6 (0.94 g, 1.1 mmol) and 7 (0.41 g, 1.1 mmol)34 was
dissolved in anhydrous acetonitrile (12 mL) at room temperature
under argon atmosphere and the mixture was stirred under reflux
for overnight. The solvent was removed under the reduced pressure
and the residue was purified by silica gel column chromatography
with hexane/ethyl acetate (1 : 2) to give 8 as dark orange oil (0.25 g,
(S)-3-(tert-Butyldimethylsilyloxy)-2-(12-(7-nitrobenzo[c][1,2,5]-
oxadiazol-4-ylamino)dodecanoyloxy)propyl stearate (5)
To a mixture of 4 (0.19 g, 0.5 mmol) and N-methylimidazole
(0.12 mL, 1.5 mmol) in dichloromethane (2.6 mL) was added
a dichloromethane solution (1 mL) of tosylchloride (0.14 g,
0.7 mmol) at room temperature under argon atmosphere and the
mixture was stirred for 30 min. A solution of 3 (0.24 g, 0.5 mmol)
in dichloromethane (4 mL) was added to the reaction mixture and
this mixture was stirred at room temperature for overnight. The
reaction was quenched by water and the mixture was extracted
with dichloromethane. The organic layer was washed with brine,
dried over anhydrous Na2SO4, and concentrated. The residue was
purified by silica gel column chromatography with hexane/ethyl
acetate (8 : 1) to give 5 as a dark orange solid (0.23 g, 0.27 mmol,
55%):1H NMR (400 MHz; CDCl3) d 8.51 (d, J = 8.4 Hz, 1H),
6.18 (d, J = 8.8 Hz, 1H), 5.08–5.06 (m, 1H), 4.32 (dd, J = 12.0,
4.0 Hz, 1H), 4.16 (dd, J = 11.6, 6.0 Hz, 1H), 3.72 (d, J = 5.6 Hz,
2H), 3.49 (q, J = 12.4, 7.2 Hz, 2H), 2.31 (ddd, J = 7.2, 2.4 Hz,
4H), 1.81 (quint, J = 6.8 H, 1H), 1.61–1.42 (m, 5H), 1.29–1.25 (m,
42H), 0.88 (s, 12H), 0.05 (s, 6H); 13C NMR (100 MHz, CDCl3)
d 173.4, 173.0, 144.2, 143.8, 136.4, 123.7, 98.4, 71.6, 62.3, 61.3,
43.9, 34.2, 34.1, 31.8, 29.6, 29.3, 29.1, 28.4, 26.8, 25.7, 24.8, 22.6,
18.1, 14.0, -5.5; IR (neat) 3329, 2924, 2855, 1744, 1620, 1350,
1312, 1258, 1157, 1119, 1038 cm-1; MS (ESI, positive) m/z 856
([M+Na]+), 872 ([M+K]+); HRMS (ESI, positive) m/z calcd. for
C45H80N4O8Si [M+Na]+: 855.5643, found: 855.5641.
1
0.25 mmol, 23%): H NMR (400 MHz; CDCl3) d 8.45 (d, J =
8.0 Hz, 1H), 6.28 (d, J = 8.8 Hz, 1H), 5.26–5.25 (m, 1H), 4.37–
3.87 (m, 4H), 3.48 (s, 2H), 3.37–3.27(m, 4H), 3.00–2.97 (m, 2H),
2.32–2.26 (m, 4H), 1.72 (quint, J = 7.2 Hz, 4H), 1.56–1.54 (m, 2H),
1.28–1.24 (m, 42H), 0.86 (t, J = 8.0 Hz, 3H); 13C NMR (100 MHz,
CD3OD) d 174.8, 166.6, 159.2, 146.2, 145.4, 138.7, 122.3, 118.2,
100.0, 69.9, 63.0, 62.7, 44.9, 44.6, 38.5, 34.9, 34.7, 32.8, 30.6,
30.2, 30.0, 27.8, 25.7, 23.5, 16.2, 14.4; IR (neat) 3564, 3329, 3082,
2909, 2851, 1732, 1620, 1180, 1119, 1045, 1003 cm-1; MS (ESI,
negative) m/z 987 ([M - H]-); HRMS (ESI, negative) m/z calcd.
for C45H83B12N5O9S [M - H]-: 988.6950, found: 988.6953.
Fluorescence-labeled closo-dodecaborane lipid (FL-SBL)
Compound 8 (0.15 g, 0.15 mmol) was dissolved in dried THF
(10 mL) and a THF (4 mL) solution of t-BuOK (0.026 g,
0.22 mmol) was added dropwise. The reaction progress was
monitored by thin layer chromatography (TLC). The solvent was
removed under reduced pressure and the residue was purified by
silica gel column chromatography with hexane/ethyl acetate (1 : 2)
to give FL-SBL as dark orange oil (0.075 g, 0.074 mmol, 49%):
1H NMR (400 MHz; CDCl3) d 8.44 (d, J = 8.4 Hz, 1H), 6.29 (d,
J = 8.4 Hz, 1H), 5.20–5.15 (m, 1H), 4.29–4.13 (m, 4H), 3.47–3.41
(m, 2H), 3.21 (s, 2H), 2.43–2.24 (m, 4H), 1.72–1.69 (m, 4H), 1.52
(s, 2H), 1.38–1.21 (m, 42H), 0.84 (t, J = 8.0 Hz, 3H); 13C NMR
(100 MHz, CD3CN) d 174.1, 160.8, 145.5, 145.3, 138.3, 123.7,
122.0, 99.8, 69.8, 63.6, 62.6, 44.6, 36.0, 35.8, 34.7, 34.5, 32.5, 30.3,
29.9, 29.6, 27.5, 25.5, 23.3, 14.3; IR (neat) 3568, 3422, 3321, 3082,
2924, 2855, 1732, 1620, 1269, 1188, 1161, 1123, 1053 cm-1; MS
(ESI, negative) m/z 466 ([(M - 2K])/2]2-); HRMS (ESI, negative)
m/z calcd. for C41H78B12K2N4O9S [(M - 2K)/2]2-: 467.3303, found:
467.3305.
(S)-3-(2-Bromoacetoxy)-2-(12-(7-nitrobenzo[c][1,2,5]oxadiazol-4-
ylamino)dodecanoyloxy)propyl stearate (6)
To a solution of 5 (1.08 g, 1.3 mmol) in THF (10 mL) was added
tetrabutylammonium fluoride (TBAF, 1 M in 1% water containing
THF, 1.4 mL) at room temperature and the mixture was stirred
for 7 h. The mixture was concentrated under the reduced pressure
and dissolved in ethyl acetate. The mixture was washed with water,
dried over anhydrous MgSO4, and then concentrated. The residue
was passed through a short silica gel column chromatography
1378 | Org. Biomol. Chem., 2012, 10, 1374–1380
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The Royal Society of Chemistry 2012
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