Journal of Medicinal Chemistry
Article
[Ru(7-OCH3-dppz)(4-OCH3-py)4]2+ calculated: 425.1124, found:
425.1082. HPLC purity >95%.
Synthesis and Characterization of [Ru(dppz)(py)4](PF6)2 (Com-
plex 1). Complex 1 was obtained similarly as complex 3. Yield: 64%.
1H NMR (400 MHz, CD3COCD3) δ 9.82 (d, J = 7.9 Hz, 2H), 9.34
(d, J = 5.3 Hz, 2H), 8.74 (dd, J = 5.3 Hz, 2H), 8.74 (d, J = 5.3 Hz,
4H), 8.53 (d, J = 6.4 Hz, 2H), 8.31 (d, J = 5.5 Hz, 2H), 8.23 (d, J =
5.3 Hz, 4H), 8.09 (d, J = 5.1 Hz, 4H), 7.86 (t, J = 7.3 Hz, 2H), 7.80−
7.72 (d, J = 4.8 Hz, 4H), 7.81−7.71 (t, 4H), 7.25 (t, J = 7.4, 6.4 Hz,
4H). 13C NMR (101 MHz, CD3CN) δ 157.09, 156.20, 155.70,
152.85, 143.92, 141.04, 139.42, 139.16, 134.73, 133.60, 132.11,
130.71, 128.27, 127.57, 127.02. HR ESI-MS of [Ru(dppz)(py)4]2+
calculated: 350.0818, found: 350.0820. HPLC purity >95%.
EXPERIMENTAL SECTION
■
Materials. Benzeneruthenium(II) chloride dimer, 1,10-phenan-
throline-5,6-dione, thiazolyl blue tetrazolium bromide, 4-methoxyl-
1,2-phenylenediamine, 9,10-anthracenedipropanoicacid (9,10-
ADPA), 8-anilino-1-naphthalenesulfonic acid (ANS), 3,3′-dipropylth-
iadicarbocyanine iodide (diSC3(5)), and 4-methoxyl-1,2-phenyl-
enediamine were purchased from Acros or Alfa Aesar. Solvents
were purchased from Beijing Chemical Works, except for acetonitrile,
which was provided by China National Medicines Corporation.
Supercoiled pBR322 plasmid DNA was obtained from TaKaRa
Biotechology. Phosphate buffer saline (PBS) (1 mM, pH = 7.4),
Dulbecco’s modification of Eagle’s medium (DMEM), penicillin,
streptomycin, and fetal bovine serum (FBS) were purchased from
Corning. Hoechst, propidium iodide (PI), and DNA isolation kits for
Gram-positive bacteria were purchased from Solarbio. Nucleus
isolation kits for mammalian cells were produced by Invent
Biotechnologies. The genomic DNA of S. aureus was isolated using
a TIANamp bacteria DNA kit (TiangenBiotec, Beijing, China). All
primers were purchased from GENEWIZ (Suzhou, China).
Methicillin and vancomycin were obtained from Inalco. Transparent
plastic centrifugal tubes were purchased from Axygen. Gram-(+) S.
aureus (ATCC6538), and MRSA (ATCC43300) were purchased
from Antibacterial Center of Technical Institute of Physics and
Chemistry and China General Microbiological Culture Collection
Center.
Synthesis and Characterization of [Ru(7-OCH3-dppz)(py)4](PF6)2
(Complex 2). Complex 2 was obtained similarly as complex 3. Yield:
1
65%. H NMR (400 MHz, CD3CN) δ 9.82 (dd, J = 14.0, 8.2 Hz,
2H), 9.34 (dd, J = 11.6, 5.4 Hz, 2H), 8.74 (d, J = 5.3 Hz, 4H), 8.53
(d, J = 6.4 Hz, 2H), 8.31 (d, J = 5.5 Hz, 2H), 8.23 (d, J = 5.3 Hz, 4H),
8.09 (d, J = 5.1 Hz, 4H), 7.86 (t, J = 7.3 Hz, 2H), 7.81−7.71 (m, 4H),
7.80−7.72 (m, 4H), 7.25 (t, J = 6.4 Hz, 4H), 4.09 (s, 3H). 13C NMR
(101 MHz, CD3CN) δ 163.88, 157.01, 155.95, 155.53, 154.68,
152.50, 151.86, 145.87, 140.78, 140.57, 139.27, 139.04, 138.47,
134.49, 134.07, 132.06, 131.73, 128.01, 127.95, 127.43, 126.90,
106.83, 57.27.HR ESI-MS of [Ru(7-OCH3-dppz)(py)4]2+ calculated:
365.0872, found: 365.0874. HPLC purity >95%.
Oil/Water Partition Coefficient (Log PO/W) Measurements.
Complex 1, 2, or 3 (10 μM) was added to a mixed solution of 10 mL
of H2O/n-octanol (v/v = 1:1), and the mixtures were sonicated in the
dark for 30 min. The oil and water phases were measured on a UV−
vis spectrophotometer to obtain the concentrations of the complexes
in each phase after centrifugation. The oil/water partition coefficients
were calculated based on the following equation:
Instruments. 1H NMR spectra were recorded on a Bruker DMX-
400 MHz using tetramethylsilane (TMS) as the chemical shift
reference. High-resolution ESI mass (HR ESI-MS) spectra were
recorded on a Bruker APEX IV (7.0T) FT_MS. UV−vis absorption
spectra were obtained using a Shimadzu UV-4100 spectrophotometer.
An LED lamp (470
10 nm) was purchased from Suzhou D&R
Instruments Co., Ltd. MTT assays were carried out on a Thermo
MK3Multiscan microplate reader at 570 nm.
Log P
= Log CO/CW
(1)
O/W
where CO and CW represent the concentrations of the complexes in
octanol and H2O, respectively. Each measurement was repeated three
times.
HPLC Analysis. The purities of complexes 1−3 were analyzed by
high-performance liquid chromatography (HPLC), which was carried
out on a HITACHI chromaster using a WH-C-18 column (5 μm, 4
mm × 150 mm) under the following conditions: detection at 254 nm,
1 mL/min flow rate with 100% CH3CN in 10 min. The HPLC purity
of complexes 1−3 were more than 95%. The HPLC spectra are
DNA Binding Constant Measurement. CT-DNA was dissolved
in PBS (5 mM, pH 7.4) buffer solution, stirred overnight in ice bath,
followed by measuring the absorbance at 260 nm (ε = 6600 M−1
cm−1) to determine its concentration.
The DNA binding constant was determined by titrating CT-DNA
to a studied complex solution and fitting the following equation with
the data:
ICP-MS was tested on a PerkinElmer ELAN DRC-e inductively
coupled plasma mass spectrometer. Measurements were acquired in
KED or kinetic energy discrimination mode at 1200 W plasma RF
power and 3 V KED voltage. The nebulizer, auxiliary, and collision gas
flow rates were 15, 0.7, and 1.0 L/min, respectively. Ru was the target
isotope monitored. Calibration curves were obtained along with each
run on the ICP-MS using the Ru standard from Sigma-Aldrich. Each
measurement was carried out three times.
HPLC analysis was done on a HITACHI chromaster (pump: 5110,
auto sampler: 5210, column oven: 5310, UV−vis detector: 5420).
Synthesis and Characterization of [Ru(7-OCH3-dppz)(4-OCH3-
py)4](PF6)2 (Complex 3).32 First, 7-methoxyl-dipyrido[3,2-a:2′,3′-
c]phenazine (7-OCH3-dppz) was synthesized by refluxing 1,10-
phenanthroline-5,6-dione (210 mg, 1 mmol) and 4-methoxyl-1,2-
phenylenediamine (140 mg, 1 mmol) for 3 h in ethanol and
recrystallizing in methanol. Afterward, 94 mg (0.3 mmol) of 7-OCH3-
dppz and 75 mg (0.15 mmol) of benzeneruthenium(II)chloride dimer
were mixed with 20 mL of methanol and stirred for 2 h until it
became a homogeneous brownish solution. Then the solvent was
removed by rotary evaporation and redissolved in 40 mL of water.
After adding 500 μL of excess 4-methoxyl-pyridine, the solution was
refluxed for 4 h in N2. After cooling to room temperature, the product
was precipitated by NH4PF6 and purified on silica gel using CH3CN/
saturated KNO3 aqueous solution (v/v = 10/1) as eluent. The excess
KNO3 was removed by dissolving the product in ethanol and
filtration. Finally, the product was washed with acetone, ether, and
hexane to gain pure complex 3 as an orange-red powder. Yield: 65%.
1H NMR (400 MHz, CD3COCD3) δ 9.64 (dd, J = 18.9, 8.2 Hz, 2H),
0.5
2
i
j
j
j
y
z
z
z
z
z
z
i
j
j
j
y
z
z
z
z
z
2K C [DNA]
2
t
(ε − ε )(ε − ε ) = b − b −
/2KCt
j
j
j
j
j
a
f
b
f
s
(2)
(3)
k
{
k
{
b = 1 + KCt + K[DNA]/2s
where εf and εb are the extinction coefficients of the free and bound
complex, respectively. εa is the apparent extinction coefficient of the
complex in the presence of DNA. [DNA] denotes the concentration
of DNA in nuclear phosphate, while Ct is the concentration of the
complex, K is the DNA binding constant, and s is the binding site
size.44
9.22 (dd, J = 12.7, 5.5 Hz, 2H), 8.40 (d, J = 6.3 Hz, 4H), 8.32 (d, J =
9.3 Hz, 1H), 8.19 (dd, J = 13.9, 5.9 Hz, 2H), 7.77−7.69 (m, 6H), 7.21
(t, J = 6.9 Hz, 4H), 6.69 (d, J = 6.5 Hz, 4H), 4.09 (s, 3H), 3.97 (s,
6H), 3.68 (s, 6H). 13C NMR (101 MHz, CD3OCD3 δ 168.09, 167.87,
163.59, 157.46, 155.93, 155.15, 152.96, 152.32, 145.54, 140.53,
140.23, 138.24, 131.54, 131.45, 131.27, 127.77, 127.70, 127.62,
113.73, 113.22, 112.93, 106.51, 56.76, 56.68, 56.36.HR ESI-MS of
Agarose Gel Electrophoresis. Complexes 1, 2, and 3 of different
concentrations were added to supercoiled pBR322 DNA solutions
(Tris-acetic acid-EDTA buffer) and irradiated for 5 min (470 nm,
22.5 mW cm−2). Loading buffer was added to the samples before they
were loaded on the agarose gel, and the electrophoresis lasted for 60
min at 80 V. Then, the gel was soaked in an ethidium bromide (EB)
solution for 15 min and photographed by a Gel Doc XR system (Bio-
7366
J. Med. Chem. 2021, 64, 7359−7370