ambient, a precipitate forms immediately. Removal of an
aliquot after 30 s, filtration, and HPLC analysis shows a
barely detectable (below the quantitation limit) level of
CDMT in solution. When sampled after 30 min, all that is
observed in solution is the decomposition product 18 (eq
1). After 20 h the yield of 18 is near quantitative.
Figure 5.
Only one set of data remains to be understood at this
point: Tables 1 and 2 reveal that on prolonged exposure
further N-methylation occurs, long after the CDMT*NMM
complex has decomposed. At least one other species must
be capable of N-methylation at a very slow rate. The slower
N-methylation is sensitive to stoichiometry. With 1.1 equiv
of CDMT, no further methylation was observed after 20 h.
This suggests that decomposition of the excess CDMT*NMM
produces the weaker methylating agent. The labeling experi-
ment was only conducted for 1 h, so either 18 or the
sideproduct containing the methyl originally on NMM
(presumably methyl chloride) could be the second agent. As
these prolonged reaction times are irrelevant to the manu-
facturing process, and the identity of the second methylating
agent would not impact the control strategy, the identity of
the second agent was not determined.
prepared.9 Reaction under the standard conditions for 1 h
showed complete incorporation of the labels by HPLC/MS
into the N-methyl impurity 16.
This result led to more questions that needed to be
addressed. Clearly the methylating species is related to
CDMT; several possibilities remain. The source could be
the excess CDMT, the active ester 7, the byproduct(s) of
CDMT after the peptide coupling, or perhaps an impurity
common to all samples of CDMT (including the labeled 19).
To completely ensure the appropriateness of our control
strategy, this level of understanding is required. In particular,
if the true methylating agent was an impurity in CDMT, a
specification on the impurity would be established. We
consider it likely that all sources of CDMT, including 19,
are prepared from cyanuric chloride and methanol, so
common impurities are possible.
It is believed at this point that sufficient understanding
has been gained to ensure long-term control of N-methyla-
tion. The CDMT*NMM complex is formed at 0 °C in the
presence of 6. Solubility of the complex is very low but
sufficient to allow the very fast reaction with 6 to form the
active ester 7. The excess of CDMT*NMM is protected from
decomposition by insolubility and temperature. N-methyla-
tion of 6 or 7 does not occur at 0 °C during the time scale
of the process. L-GADE is added, and the mixture is warmed.
As the mixture warms, the excess CDMT*NMM gains
solubility and N-methylates competitively with decomposi-
tion. If held for excessive time, a decomposition product is
also capable of N-methylation.
Based on this understanding of the mechanism of N-
methylation, it is concluded that the current control strategy
is adequate. As long as the CDMT stoichiometry, specified
times, and temperatures during the peptide coupling are
maintained, the level of N-methyl impurity will not increase.
Even a massive excess of CDMT has no impact unless times
are extended or temperatures are dramatically increased.
Variation in quality of CDMT will have no impact, as CDMT
itself is the active agent.
Therefore, determining if an impurity in CDMT was the
actual problem was of primary importance. HPLC/MS of
the lot of CDMT used for these studies revealed (by both
UV and total ion count) only one impurity above the noise
level, 2,4,6-trimethoxy-1,3,5-triazine 20 (Figure 5).
A full equivalent of 2010 was tested under the more
strenuous (100 °C) conditions and found to produce minimal
16 after an hour (Table 2). To provide some assurance that
an impurity was not missed, perhaps due to decomposition
under the HPLC conditions, a sample of CDMT from a
second source (Aldrich) was tested and found to be indis-
tinguishable (Table 1).
It was next determined if the byproduct(s) of CDMT from
the peptide coupling was the methylating reagent. This is
answered by the experiment under the strenuous conditions,
employing isolated 10 as the substrate. Under these condi-
tions CDMT byproducts could not be formed, yet the control
reaction showed substantial N-methyl 16 formation in an
hour. Therefore, CDMT byproducts from the peptide coup-
ling are not required for methylation.
Given that the CDMT*NMM complex is the methylating
agent, understanding the dependence on stoichiometry be-
comes important. Surprisingly, doubling the charges of
CDMT and NMM (to 2.7 equiv) produced no significant
change in the level of N-methyl 16 when sampled after 1 h.
While this constitutes a great result for one designing a
control strategy, it was difficult at first to understand. It is
now believed that a combination of the poor solubility of
the CDMT*NMM complex and the instability of the complex
are responsible for this lack of sensitivity to stoichiometry.
When NMM is added to a DMF solution of CDMT at
Experimental Section
Isolation and Characterization of N-Methyl Peme-
trexed (12). N-Methyl Pemetrexed (12) was isolated from a
production batch of Pemetrexed Disodium Heptahydrate (1)
by preparative reversed-phase HPLC. Repeated injections of
a 100 mg/mL solution of 1 in water were needed. Chroma-
tography was conducted on a Kromasil C18 (50 mm × 250
mm, 10 µm) column. Separation was achieved using am-
monium formate buffer (pH 3.5) and a gradient ramp from
12 to 25% acetonitrile over 25 min. 12 was isolated from
the combined fractions by rotary evaporation, followed by
lyophilization.
(9) Prepared by use of appropriately labeled methanol in the procedure described
in: Cronin, J. S.; Ginah, F. O.; Murray, A. R.; Copp, J. D. Synth. Commun.
1996, 26, 3491-3494.
(10) Obtained from Aldrich.
(11) Willker, W.; Leibfritz, D.; Kerssebaum, R.; Bermel, W. Magn. Reson. Chem.
1993, 31, 287-292.
HRMS found (M + 1) 442.1704, calculated for C21H23N5O6
441.1648 (calculated for M + 1 442.1726). All NMR spectra
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