Journal of Medicinal Chemistry
Brief Article
62.45, 41.11, 35.89, 35.21, 35.12, 34.63, 34.06, 32.27, 32.13, 32.02,
32.00, 29.70, 24.83; m/z (ESI) 391 ([M + H]+, 100%), 279 (9), 186
(5); [α]2D0 = +16.1 (c 0.3, methanol). HPLC: purity, 97.1%; retention
time, 15.85 min. HRMS (ESI) calcd for C26H30O3 [M + H]+,
391.2267; found, 391.2243 (ent-9a); [α]2D0 = −20.8 (c 0.8, methanol).
HPLC: purity:, 97.4%; retention time, 15.85 min
Table 2. Biological Evaluation Using BRET2 Assays for
RXR−Nurr1 and RXR−RXR Dimers
a
RXR−Nurr1
pEC50 efficacy (%)
100
RXR−RXR
pEC50 efficacy (%)
entry
compd
1
2
3
4
5
bexarotene
9a
8.0 0.1
7.9 0.1
6.3 0.1
7.9 0.3
<5.5
3
7.5 0.2
7.6 0.2
100
85
7
4-[(11S,16R)-4,4,7,7-Tetramethyl-17-oxatetracyclo
[8.7.0.03,8.011,16]heptadeca-1(10),2,8-trien-11-yl]benzoic Acid
111 12
49 13
3
1
(9b). H NMR (400 MHz, CDCl3) δ 8.04 (d, J = 8.6 Hz, 2H), 7.50
ent-9a
9b
NA
80
NA
(d, J = 8.6 Hz, 2H), 6.80 (s, 1H), 6.75 (s, 1H), 4.81 (t, J = 3.9 Hz,
1H), 2.38−2.26 (m, 1H), 2.07−1.98 (m, 1H), 1.92−1.83 (m, 1H),
1.75−1.49 (m, 9H), 1.27 (s, 6H), 1.19 (s, 3H), 1.13 (s, 3H). 13C NMR
(101 MHz, CDCl3) δ 169.70, 156.58, 151.46, 145.12, 137.58, 134.78,
130.06, 127.91, 126.99, 121.10, 107.30, 89.15, 52.12, 35.23, 35.11,
34.66, 34.11, 33.97, 32.23, 32.05, 32.01, 31.99, 26.49, 21.72, 19.78;
[α]2D0 = +16.1 (c 0.9, CHCl3); retention time HPLC (min), 16.53.
Purity: 95.0%. HRMS (ESI) calcd for C27H33O3 [M + H]+, 405.2423;
found, 405.2402 (ent-9b); [α]2D0 = −13.6 (c 0.5, CHCl3); retention
time HPLC (min), 16.53. Purity: 95.0%, 3 mg, 11% yield.
96
92
8
1
7.8 0.7
4
ent-9b
a
Pharmacological profiling in BRET2 assays. BRET2 assays performed
as described by Tan et al.35 using RXR and Nurr1 receptors tagged
with GFP and Renilla. luciferase as described in the methods. NA =
not active. pEC50 is the negative logarithm of EC50 in molar. Agonist
efficacies were compared to that of bexarotene (100%). Values
represent the mean SD of three or more independent experiments
(n ≥ 3)
2-Fluoro-4-{4,4,7,7-tetramethyl-17-oxatetracyclo
[8.7.0.03,8.011,16]]heptadeca-1(10),2,8-trien-11-yl}benzoic Acid
1
whole cell functional assays resulting in the finding of full
agonist 9a with pEC50 of 8.2 at RXR and RXR−Nurr1. The
established SAR showed that the five- and six-membered
benzofurans are more potent than the seven-membered
congeners and that the enantiomers 9a and 9b are more active
as compared to ent-9a and ent-9b. The crystal structural data,
which show that 9a nicely addresses the key hydrophobic and
polar interaction potential in the RXRα pocket, supports this
trend. The sterically constricted dihydrobenzofuran scaffold
imparts exactly the right molecular topology for activating
RXRα, as also addressed by bexarotene, but additionally
providing a stable framework for specific molecular optimiza-
tions. Given the specific molecular topology of the benzofuran
scaffold, this series of compounds provides a new platform for
further RXR−Nurr1 exploration.
(rac-9c). H NMR (400 MHz, CDCl3) δ 7.97 (t, J = 8.1 Hz, 1H),
7.26 (dd, J = 8.3, 1.8 Hz, 1H), 7.19 (dd, J = 12.9, 1.7 Hz, 1H), 6.80 (s,
1H), 6.76 (s, 1H), 4.77 (t, J = 4.1 Hz, 1H), 2.25 (dd, J = 14.1, 5.6 Hz,
1H), 1.99 (dd, J = 11.5, 6.0 Hz, 1H), 1.95−1.82 (m, 1H), 1.79−1.49
(m, 9H), 1.27 (s, 6H), 1.20 (s, 3H), 1.15 (s, 3H). 13C NMR (101
MHz, CDCl3) δ 167.90 (d, J = 6.5 Hz), 162.43 (d, J = 260.8 Hz),
156.60 (s), 154.75 (d, J = 7.9 Hz), 145.52 (s), 137.82 (s), 133.84 (s),
132.47 (s), 123.48 (d, J = 3.2 Hz), 121.03 (s), 116.46 (d, J = 23.5 Hz),
115.56−114.54 (m), 107.52 (s), 88.89 (s), 52.24 (s), 35.23 (s), 35.12
(s), 34.71 (s), 34.14 (s), 33.71 (s), 32.26 (s), 32.08 (s), 32.01 (s),
32.00 (s), 26.59 (s), 21.53 (s), 19.67 (s). 19F NMR (376 MHz,
CDCl3) δ −75.80 (s, ethyl trifluoroacetate), −107.75 (dd, J = 12.8, 7.9
Hz). Retention time HPLC (min): 16.18. Purity: 92.4%. HRMS (ESI)
calcd for C27H31FO3 [M + H]+, 423.2329; found, 423.2307
4-{13,13,16,16-Tetramethyl-9-oxatetracyclo[8.8.0.02,8.012,17]-
octadeca-1(18),10,12(17)-trien-2-yl}benzoic Acid (12 and 13).
12: 1H NMR (400 MHz, CDCl3) δ 8.01 (d, J = 8.7 Hz, 2H), 7.40 (d, J
= 8.7 Hz, 2H), 6.88 (s, 1H), 6.77 (s, 1H), 4.89 (dd, J = 7.3, 1.8 Hz,
1H), 2.41 (dd, J = 14.5, 10.3 Hz, 1H), 2.21 (m, 1H), 2.11 (dd, J =
14.42, 8.30 Hz, 1H), 1.91 (m, 1H), 1.64 (m, 8H), 1.42 (m, 1H), 1.29
(s, 3H), 1.27 (s, 3H), 1.25 (m, 1H), 1.22 (s, 3H), 1.20 (s, 3H). 13C
NMR (101 MHz; CDCl3) δ 170.46, 157.08, 155.61, 145.63, 137.08,
130.36, 126.82, 126.47, 122.69, 106.22, 93.69, 57.88, 38.19, 35.24,
35.17, 34.67, 34.05, 32.31, 32.16, 32.08, 32.01, 31.81, 31.04, 29.71,
25.27, 23.43; m/z (ESI) 419 ([M + H]+, 100%), 282 (40). Retention
time HPLC (min): 17.99. Purity: 93.5%. HRMS (ESI) calcd for
EXPERIMENTAL SECTION
■
General Information. Chemicals and solvents were purchased
from Sigma-Aldrich. 1H and 13C NMR spectra were recorded at 25 °C
in CDCl3 on a Varian 400 MHz spectrometer equipped with a Varian
OneNMRProbe with a proton observe frequency of 399.95 MHz.
Chemical shifts are reported in ppm with the solvent residual peak as
internal standard. 19F NMR was measured with ethyl trifluoroacetate
as internal standard (−75.8 ppm). Optical rotation was measured on a
PerkinElmer polarimeter 341 LC. Gas chromatography/mass spec-
trometry analyses were performed on a Varian Saturn 2000 GCMS
with a Supelco SLB-5 ms fused silica capillary column using helium as
carrier gas at an injector temperature of 300 °C. Temperature
program: 70−330 °C (12 °C/min) with 4 min hold time. The MS
detector consisted of an ion trap with 70 eV ionization. Purity was
measured at λ = 254 nm on a Waters 2690/996 photodiode array
detector using HPLC-grade solvents; water 0.1% TFA/acetonitrile
0.1% TFA with an Atlantis T3 5 μm, 4.6 mm × 250 mm column. The
purity of the target compounds was determined to be at least 95%.
The only exception was rac-9c and 12, which were determined to be
92.4% and 93.5% pure, respectively. Preparative HPLC was executed
on a Waters 600/2487 dual λ absorbance detector using HPLC-grade
solvents; water 0.1% TFA/acetonitrile 0.1% TFA with an Atlantis prep
T3 5 μm, 19 mm × 250 mm column. HRMS was measured on a
Thermo LTQ-OrbitrapXL nano-ES in positive ion mode.
1
C28H34O3 [M + H]+, 419.2580; found, 419.2600. 13: H NMR (400
MHz, CDCl3) δ 7.97 (d, J = 8.6 Hz, 2H), 7.56 (d, J = 8.6 Hz, 2H),
6.80 (s, 1H), 6.78 (s, 1H), 4.88 (dd, J = 11.5, 6.6 Hz, 1H), 3.02 (m,
1H), 2.24 (m, 2H), 1.89 (m, 3H), 1.59 (m, 6H), 1.47 (m, 1H), 1.25 (s,
3H), 1.21 (s, 3H), 1.18 (s, 3H), 1.04 (s, 3H), 0.90 (m, 1H). 13C NMR
(101 MHz; CDCl3) δ 171.41, 155.88, 149.44, 145.02, 137.78, 136.84,
130.23, 126.85, 126.40, 120.54, 107.76, 92.46, 54.40, 35.15, 35.01,
34.61, 34.07, 32.38, 32.03, 31.89, 31.77, 29.70, 27.09, 26.31, 25.02,
23.15; m/z (ESI) 419 ([M + H]+, 100%), 254 (48). Retention time
HPLC (min): 16.75. Purity: 98.9%. HRMS (ESI) calcd for C28H34O3
[M + H]+, 419.2580; found, 419.2597.
ASSOCIATED CONTENT
■
S
* Supporting Information
The Supporting Information is available free of charge on the
4-[(11S,15R)-4,4,7,7-Tetramethyl-16-oxatetracyclo
[8.6.0.03,8.011,15]hexadeca-1(10),2,8-trien-11-yl]benzoic Acid
1
(9a). H NMR (400 MHz, CDCl3) δ 8.05 (d, J = 8.4 Hz, 2H), 7.42
(d, J = 8.5 Hz, 2H), 6.87 (s, 1H), 6.71 (s, 1H), 5.14 (d, J = 5.8 Hz,
1H), 2.33 (dd, J = 9.47, 4.25 Hz, 2H), 2.15 (dd, J = 13.58, 6.22 Hz,
1H), 1.91 (m, 2H), 1.65 (m, 5H), 1.26 (s, 3H), 1.25 (s, 3H), 1.21 (s,
3H), 1.13 (s, 3H). 13C NMR (101 MHz; CDCl3) δ 171.82, 158.21,
153.02, 145.47, 137.44, 130.47, 130.36, 126.75, 122.23, 106.02, 96.19,
Detailed experimental procedures, analytical data (NMR,
MS, HRMS, optical rotation, HPLC methods), crystal-
Molecular formula strings (CSV)
1236
J. Med. Chem. 2016, 59, 1232−1238