Selective activation of organocatalysts by specific signals

Article abstract of DOI:10.1039/c8sc02019a

Reminiscent of signal transduction in biological systems, artificial catalysts whose activity can be controlled by physical or chemical signals would be of high interest in the design of chemical systems that can respond to their environment. Self-immolative chemistry offers a generic method for the development of catalysts that can be activated by different signals. To demonstrate the versatility of that concept, we synthesized organocatalysts that can be activated by three different signals and that can be used to control two different reactions. In this way the organocatalyst proline is designed as a pro-catalyst that is activated either by the chemical signal H₂O₂, by light or by the enzyme penicillin acylase. The pro-catalysts were used to exert temporal control over the rate of an aldol reaction and a Michael reaction.

Full text of DOI:10.1039/c8sc02019a

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Selective activation of organocatalysts by specific signals
#
#
Chandan Maity , Fanny Trausel , and Rienk Eelkema*
Department of Chemical Engineering, Delft University of Technology,
van der Maasweg 9, 2629 HZ Delft, the Netherlands
#
equal contributions, * corresponding author: r.eelkema@tudelft.nl
Abstract
Reminiscent of signal transduction in biological systems, artificial catalysts whose activity can be
controlled by physical or chemical signals would be of high interest in the design of chemical systems
that can respond to their environment. Self-immolative chemistry offers a generic method for the
development of catalysts that can be activated by different signals. To demonstrate the versatility of
that concept, we synthesized organocatalysts that can be activated by three different signals and
that can be used to control two different reactions. In this way the organocatalyst proline is designed
2 2
as a pro-catalyst that is activated either by the chemical signal H O , by light or by the enzyme
Penicillin Acylase. The pro-catalysts were used exert temporal control over the rate of an aldol
reaction and a Michael reaction.
Introduction
In nature, cells communicate and respond to signals from their environment by changing the activity
1
,2
of enzymes. Artificial catalysts that can be activated by different signals are scarce and would be of
high interest to design systems that can respond to the environment. Some catalysts that can be
3
4
activated by signals are reported. Many of these catalysts use light as a signal. Only a small number
3
,5-7
of catalysts that can be activated by chemical signals are found in the literature.
Many of these
catalysts suffer from complex syntheses and a lack of generic design. A versatile tool to design
8
-10
catalysts that can respond to different signals is self-immolative chemistry.
A self-immolative
molecule contains a signal-labile functional group. When this group reacts with the signal, the
molecule fragments and releases a molecule of interest, in our case a catalyst. Recently we reported
an organocatalyst that can be activated by a chemical signal and that controls the formation of a
1
1
polymer or a self-assembled material.
Here we report a general strategy to design organocatalysts that can be selectively activated in
response to a specific signal. To demonstrate the versatility of the design we report how to render an
organocatalyst responsive to three different signals and that it can be used to control the rates of
two different reactions. Specifically, we synthesized three different protected proline catalysts that

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can be activated by three different signals (Figure 1): PP-1 is activated by the chemical signal H
PP-2 is activated by light and PP-3 is activated via catalytic hydrolysis by the enzyme Penicillin Acylase
PA). When the pro-prolines are activated by the relevant signal, the catalyst proline P-4 is released.
2 2
O ,
(
In addition, we used the pro-prolines to catalyse an aldol reaction between a ketone and an aldehyde
and a Michael reaction between an nitro-olefin and an aliphatic aldehyde. The strategy constitutes a
versatile method for the development a wide range of pro-catalysts to control a large variety of
reactions.
Figure 1: A generic design for a pro-catalyst can be activated by a signal to catalyse a reaction. (a) Schematic
representation of the protected organocatalyst that is activated by the signal and then catalyses a reaction.
(
2 2
b) The pro-proline PP-1 is activated by the chemical signal H O and releases the organocatalyst proline P-4.
PP-2 is activated by light and releases P-4. PP-3 is activated by the enzyme Penicillin Acylase (PA) and releases
P-4. (c) The aldol reaction between acetone 5 and 4-nitrobenzaldehyde 6 is catalysed by P-4. (d) The Michael
reaction between trans-β-nitrostyrene 8 and butanal 9 is catalysed by P-4.

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Results and discussion
Catalyst design. The general strategy to design an organocatalyst that can be activated by a signal to
control a catalytic target reaction, is based on the following considerations (Figure 1a):
1
) The catalytic centre of the organocatalyst should allow protection with a self-immolative
moiety: organocatalysts which have a primary or secondary amine or an alcohol as a catalytic
centre are promising candidates.
2
) It should be possible to activate the catalyst in less than 30 minutes (depending on the
timescale of the reaction) under the same conditions as are required for the catalytic target
reaction. To enable the facile release of the catalyst it may be important to include a
8
carbamate or carbonate group.
3
4
5
6
) All reagents, the catalyst and the pro-catalyst should be soluble in the same solvent and the
solvent should be compatible with the signal and the self-immolative reaction;
) The signal that activates the catalyst should not lead to a different outcome of the catalytic
target reaction;
) The pro-catalyst should be stable under the conditions used in the catalytic target reaction
and should not release the catalyst without being triggered by a specific signal;
) The catalytic target reaction should be susceptible to catalysis (show at least a 2-fold increase
in reaction rate upon addition or activation of the catalyst) under the operating conditions.
Based on these guidelines we recently designed an organocatalyst that can be activated by a
1
1
chemical signal and that controls the formation of a polymer or supramolecular network material.
1
2
There, hydrazone bond formation was catalysed by a signal-responsive aniline procatalyst.
In the current work, we want to demonstrate the versatility of the design. We chose proline as an
organocatalyst for two reasons. Firstly, proline is a simple organocatalyst with a catalytic centre that
can easily be modified. Secondly, proline is a nucleophilic catalyst used for many different
1
3
reactions. We decided to protect proline with three different self-immolative groups that react to
three different signals (Figure 1b). PP-1 is protected with a boronic acid self-immolative group that is
oxidatively cleaved by hydrogen peroxide. Hydrogen peroxide is a relevant disease related biomarker
1
4-16
as it is generated during oxidative stress by the oxidation of enzyme substrates such as glucose.
PP-2 contains a light-sensitive group that is cleaved upon irradiation. To extend the scope of our
design to biological systems we designed PP-3: the hydrolysis of the ester group in PP-3 to induce the
self-immolative reaction is catalysed by the enzyme Penicillin Acylase (PA).
Synthesis of the catalysts. The pro-prolines were synthesized via chloroformate intermediates in two
steps (Figure 2). The total yield over all steps for PP-1 is 74%, for PP-2 it is 45% and PP-3 it is 48% (see
SI for more information). By incorporating a carbamate group in the design we took into account

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design guideline 2. The synthetic route is generic: it enables the protection of a large range of
organocatalysts and the use of a variety of self-immolative protecting groups to allow response to
different signals.
Figure 2: Synthetic route to form pro-prolines PP-1, PP-2 and PP-3. (a) Synthesis of PP-1, reaction conditions: i)
Na
temperature, overnight, iii) NaIO
i) HNO (70% in water), 0 – 20 °C, 2 h, ii) NaBH
toluene, 0 °C – room temperature, 6 h, iv) NaHCO
Synthesis of PP-3, reaction conditions: i) phenylacetyl chloride, triethylamine, THF, 0 °C – room temperature,
overnight, ii) NaBH , 2-propanol, 1 h, room temperature, iii) K CO , triphosgene, toluene, 0 °C – room
2
CO
3
, triphosgene, toluene, 0 °C – room temperature, 6 h. ii) NaHCO
, NH OAc, water / acetone (2:1 v/v). (b) Synthesis of PP-2, reaction conditions:
, methanol, 1 h, room temperature, iii) K CO , triphosgene,
, P-4, water, 0 °C – room temperature, overnight. (c)
3
, proline P-4, water, 0 °C – room
4
4
3
4
2
3
3
4
2
3
temperature, 6 h, iv) trimethylsilylchloride (TMSCl), diisopropylamine, DCM, 0 °C – room temperature, 4 h.
Activation of the catalysts. We tested whether the pro-prolines would release proline when the
relevant signal was applied and whether this conversion was complete (see SI for more information).
2 2
To PP-1 (50 mg) in methanol (2 mL) we added H O (1 mL, 30%, 1 mL). After 10 min, thin layer
chromatography showed complete conversion of PP-1. The reaction mixture was concentrated under
reduced pressure, diluted with ethyl acetate and washed with sodium sulfite (sat., aq). The obtained
1
solution was concentrated under reduced pressure and analysed by H NMR spectroscopy and mass
spectrometry to confirm complete conversion of PP-1 and the formation of proline P-4. When we
followed the activation of PP-1 (10 mM in 20% dimethylformamide-d
7
in 10 mM sodium phosphate
buffer of pH 8.0) in NMR, we found that 10 equivalents of H are sufficient to convert PP-1
2
O
2
completely into P-4 in within 10 minutes. We noticed that although the boronic acid group is
efficiently removed in up to 80% organic solvent, for the release of proline, 70 - 80% buffer is
necessary to decrease the activation time (from 2 hours in 50% buffer to 10 minutes in 80% buffer).
To investigate the activation of PP-2 we irradiated PP-2 (50 mg) in methanol (2 mL) in a 4 mL vial with
light for 30 minutes using a Nikon Intensilight C-HGFI lamp (130 W mercury lamp with 100% light

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1
intensity, 320 – 600 nm). The activation of PP-2 was analysed by UV/vis spectroscopy, H-NMR
spectroscopy and mass spectrometry and confirmed complete conversion and release of P-4. To
activate PP-3 we added a solution of PA (5.5 mg, 98U) in sodium phosphate buffer (100 mM, pH 7.4)
to a solution of PP-3 (0.5 mg) in acetone (10 µL). After stirring for 10 minutes we concentrated the
reaction mixture, added chloroform and filtered. The solution was concentrated under reduced
1
pressure and analysed by H NMR and mass spectroscopy and confirmed complete conversion of PP-
3
and release of P-4. In short, all pro-prolines were converted completely into proline within 30
minutes, thereby keeping with guideline 2. The design of the pro-catalysts thus enables efficient
signal triggered release of the catalyst.
Using the pro-catalysts to control reaction kinetics. We investigated whether we could use the pro-
prolines to control reaction kinetics. We focussed on two reactions that obey guidelines 3-6
reasonably well: an aldol reaction between a ketone and an aldehyde and a Michael reaction
between an nitro-olefin and an aldehyde.
Control over the aldol reaction. We chose the proline-catalysed aldol reaction between acetone 5
and 4-nitrobenzaldehyde 6. For the activation of both PP-1 and PP-3 an aqueous environment is
necessary. As reported in the literature, proline catalysis of aldol reactions is typically severely
hindered by water. Still, in buffered media with the help of the surfactant sodium dodecyl sulfate
1
7
(
SDS), the reaction is accelerated by proline P-4. Proline acts as a nucleophilic catalyst by forming an
1
8
1
enamine intermediate with acetone. The aldol reaction was followed using H-NMR spectroscopy,
reaction conditions: 4-nitrobenzaldehyde 6 (10 mM), PP-1 (2 mM) in 20% acetone 5 in sodium
17
2
phosphate buffer (100 mM, pH 7.4) with 10% D O and SDS (1 mM) as an additive (Figure 3, Table 1).
Without catalyst the aldol product 7 is still formed, it reaches 65% conversion in 48 h. The native
catalyst P-4 (2 mM) induces a 4.2-fold increase in reaction rate and reaches 99% conversion in 48 h:
this indicates that the aldol reaction is indeed catalysed by P-4. The reactions in the presence of
unactivated PP-1, PP-2 and PP-3 (2 mM) show the same reaction rate as the uncatalysed reaction and
reach a 65% conversion as well after 48 h. Without activation the pro-catalysts thus do not show any
catalytic activity. Addition of H O (2 mM, 1 equivalent to PP-1) to the reaction with PP-1 (2 mM)
2
2
induces a 2.6-fold increase in reaction rate and the reaction reaches 93% conversion in 48 h. This
indicates an efficient activation of the catalyst. H O alone does not have any influence on the
2
2
reaction rate. It is important not to use an excess of H
2
2
O with respect to PP-1 to prevent oxidation of
nitro-benzaldehyde 6 (see supplementary information). Irradiating the reaction mixture containing
PP-2 (2 mM) leads to a 2.3-fold increase of reaction rate and a conversion of 93% after 48h, another
demonstration of efficient catalyst activation. Light-irradiation in the absence of PP-2 does not have

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any influence on the reaction rate. Addition of PA (5.5 mg, 98 U) to a reaction mixture containing PP-
leads to a 2.7-fold increase in reaction rate and a conversion of 97% after 48h. These results
3
indicate efficient activation of pro-catalysts when the relevant signal is applied. Additionally, we
applied ‘wrong’ signals to check whether each pro-catalyst is selectively activated by a specific signal.
Irradiation of the reaction mixture with PP-1 or PP-3 did not result in any increase in reaction rate. To
2 2
the reaction mixture with PP-2 we added H O as a ‘wrong’ signal, and again, we did not observe an
increase in reaction rate. These results demonstrate that the pro-catalysts are specific in their
response, keeping with guideline 5. Altogether, the pro-catalyst-aldol system adheres to the
guidelines reasonably well, however, because of the relatively large background reaction rate for
1
9
aldol reactions, response to catalyst activation is only modest.
Importantly, addition of the signal at any given time during the reaction should lead to a change in
reaction rate at that particular moment. To investigate this, we followed the reaction with PP-1 (2
2 2
mM) and added H O (2 mM) after 22 hours (Figure 3). The reaction rate increased 1.6-fold. This
result demonstrates an autonomous response to a chemical change in the environment. The increase
in reaction rate is lower than when the signal was added at the beginning of the reaction: this can be
explained because a large part of the 4-nitrobenzaldehyde 6 has already been consumed and lower
concentrations of reagents that are part of the rate equation lead to lower reaction rates. Similarly,
when we followed the reaction with PP-2 (2 mM) and irradiated with light after 22 h we found a 1.5-
fold increase in reaction rate. Furthermore, addition of PA (5.5 mg, 98U) after 22 h to the reaction
containing PP-3 led to a 1.4-fold increase in reaction rate. The pro-catalysts thus allow temporal
response to signals from the environment.

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Figure 3: Kinetic analysis of the aldol reaction between 4-nitrobenzaldehyde 6 and acetone 5. Conditions: 10
mM 4-nitrobenzaldehyde 6, 20 volume % acetone 5, 2 mM (20 mol%) PP-1, 2 mM (1 eq) H O in sodium
2
2
phosphate buffer (100 mM, pH 7.4) with 10 v% D
the aldol product follow with NMR spectroscopy in the presence of P-4 (blue), without catalyst (black), PP-1
without activation (green), PP-1 and H (red). (b) Conversion of the aldol reaction in the presence of PP-2
2
O and 1 mM sodium dodecyl sulfate (SDS). (a) Conversion of
2
O
2
without activation (green) and in the presence of PP-2 after irradiation with light (red). (c) Conversion of the
aldol reaction in the presence of PP-3 without activation (green) and in the presence of PP-3 after addition of
2 2
Penicillin Acylase. (d) Conversion of the aldol reaction in the presence of PP-1 (blue), the signal H O was added
after 22 h (black). (e) Conversion of the aldol reaction in the presence of PP-2 (green), after 22 h, the reaction
mixture was irradiated with light (red). Aldol reaction in the presence of PP-3 (purple), after 22 h, Penicillin
Acylase was added (orange). (f) Conversion (%) after 48 hours of reaction time, without signal (blue), with
signal (red). In (d,e,f) the arrow indicates the moment of signal addition. (g) Conversion to the aldol product
after 48 hours, in the absence or presence of the appropriate signal.

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Table 1: Second order reaction rate constants for the aldol reaction between 4-nitrobenzaldehyde 6 and
acetone 5. Reaction conditions: 4-nitrobenzaldehyde 6 (10 mM), (pro-)proline (2 mM) in 20% acetone 5 in
sodium phosphate buffer (100 mM, pH 7.4) with 10% D
2 2
O and sodium dodecyl sulfate (1 mM) as an additive. k
is the second order reaction rate constant, krel = kcat / kuncatalysed
.
-
1 -1
Catalyst system
k
2
(M s )
k
rel
-6
-5
-6
-6
-6
-6
-6
-6
-6
-6
-6
None
2.4 × 10
1.0 × 10
6.2 × 10
2.4 × 10
2.4 × 10
5.5 × 10
2.3 × 10
2.4 × 10
6.6 × 10
2.2 × 10
2.3 × 10
1.0
4.2
2.6
1.0
1.0
2.3
1.0
1.0
2.7
0.9
0.9
P-4
PP-1 + H
2 2
O
PP-1
PP-1 + light
PP-2 + light
PP-2
2 2
PP-2 + H O
PP-3 + PA
PP-3
PP-3 + light
Control over the Michael reaction. To demonstrate the versatility of the responsive catalyst system,
we also used PP-1 to control the rate of a Michael reaction between trans-β-nitrostyrene 8 and
butanal 9 (Figure 3). Proline acts as a nucleophilic catalyst in the Michael reaction by forming an
2
0
enamine intermediate with the aldehyde. Even though the reaction is commonly performed in
2
1
organic solvents, the organocatalyzed Michael reaction is known to proceed in water. Reaction
conditions: 10 mM trans-β-nitrostyrene 8, 100 mM butanal 9, 10 mM P-4 or PP-1, 100 mM (10 eq)
2 2 7 7
H O in phosphate buffer (10 mM, pH 8.0) + dimethyl formamide-d (DMF-d ). DMF-d7 (20% v/v) was
used to ensure solubility of the product. An advantage of the Michael reaction is the complete lack of
background reactivity: without catalyst the reaction does not show any detectable conversion.
-3
-1 -1
Addition of the native catalyst P-4 (10 mM) increases the reaction rate constant to 7.7 × 10 M s .
This indicates that the Michael reaction is catalysed by P-4: in fact for the reaction to proceed on a
reasonable timescale, it requires a catalyst. The reaction in the presence of PP-1 (10 mM) without the
chemical signal does not show any conversion. The reaction with PP-1 (10 mM) and H
2
O
2
(10
equivalents, 100 mM) proceeds with a rate constant of 2.0 × 10 M s . These results indicate that
the catalyst is efficiently activated. The rate for the reaction with PP-1 and H is considerable lower
than the rate for the reaction with P-4. This decrease in reaction rate can partially be explained by
the use of H : the Michael reaction in the presence of P-4 and H has a lower rate constant (9.3 ×
0 M s ) than the reaction with only P-4 (7.7 × 10 M s ). Analysis of the reaction mixture by
NMR spectroscopy reveals that the trans-β-nitrostyrene 8 degrades slowly in the presence of H O .
-
4
-1 -1
2
O
2
2
O
2
2 2
O
-4
-1 -1
-3
-1 -1
1
2
2
This negative influence of the signal H O on the reaction is in conflict with guideline 3. The rate
2
2

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2 2
constant for the Michael reaction in the presence of PP-1 and H O is even lower: because we
confirmed with NMR measurements that PP-1 is completely converted during the reaction, a reason
for the decrease in reaction rate might be that more trans-β-nitrostyrene 8 is degraded in the time
(10 min) that it takes to activate PP-1. Importantly, because of the complete lack of background
reaction we should be able to use our responsive catalyst to switch the system from ‘off’ (no
conversion) to ‘on’ (the reaction proceeds). Indeed, the reaction (or lack thereof) was followed for 1
2 2
hour, after which H O (100 mM) was added: this resulted in an immediate response and again a
-
4
-1 -1
reaction rate constant of 2.0 × 10 M s . All in all, the pro-catalyst can be used to design a system
that can autonomously switch on when a specific chemical signal is detected.
Figure 4: Kinetic analysis of the Michael reaction between trans-β-nitrostyrene 8 and butanal 9. Reaction
conditions: 10 mM trans-β-nitrostyrene 8, 100 mM butanal 9, 10 mM PP-1, 100 mM (10 eq) H
buffer (10 mM, pH 8.0) + dimethyl formamide-d (DMF-d ). (a) Conversion to the Michael product 10 followed
with NMR spectroscopy, reaction with PP-4 (10 mM, blue), without catalyst (black, overlapping with blue), with
P-4 (10 mM, green) and with PP-1 (10 mM) and H (100 mM, red). (b) Conversion to the Michael product 10
2 2
O in phosphate
7
7
2
O
2
1
followed with H-NMR spectroscopy, reaction with PP-1 (10 mM, blue) and the reaction with PP-1 (10 mM)
where H O (100 mM) was added after 1 hour (red). The arrow indicates the moment of signal addition. (c)
2
2
Conversion (%) after 8 hours of reaction time, without signal (blue), with signal (red). With P-4 the reaction
reaches >99% conversion in 8 h and with PP-1 and the H O the reaction reaches 89% conversion. Without
2
2
catalyst or signal, there is no conversion.

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Table 2: Second order reaction rate constants for the Michael reaction between trans-β-nitrostyrene 8 and
butanal 9. Reaction conditions: 10 mM trans-β-nitrostyrene 8, 100 mM butanal 9, 10 mM PP-1, 100 mM (10 eq)
2 2 7 7 2
H O in phosphate buffer (10 mM, pH 8.0) + dimethyl formamide-d (DMF-d ). k is the second order reaction
rate constant.
-
1 -1
Catalyst system
2
k (M s )
None
0
PP-1
0
H
2
O
2
0
-3
-4
-4
P-4
7.7 × 10
2.0 × 10
9.3 × 10
PP-1 + H O2
2
P-4 + H O2
2
Conclusions
In summary, we demonstrate a versatile design for the development of responsive catalysts that can
be selectively activated by various signals. The generic design allows for a straightforward synthesis
for the blocking of catalysts with a variety of self-immolative groups. The self-immolative design
enables efficient activation of the pro-catalysts with a reasonable amount of signal. We
demonstrated an application of our catalyst design by synthesizing three examples of blocked proline
2 2
catalysts, of which one can be activated by H O (PP-1), the second by light (PP-2) and the third by
the enzyme Penicillin Acylase (PP-3). PP-1, PP-2 and PP-3 were used to control the rate of an aldol
reaction: activation of the pro-catalyst showed the same increase in rate as when the native catalyst
was added. The pro-catalysts could also be activated efficiently during the reaction, allowing
temporal control over the reaction rate. The versatility of the pro-catalyst system was made more
apparent as we additionally used PP-1 to control a Michael reaction. This reaction does not show any
conversion without active catalyst. Activation of PP-1 enables the reaction to proceed, even though
the reaction rate is lower than when the native proline catalyst is used. The reaction can be initialized
at any moment in a mixture of the starting materials for the Michael reaction with PP-1 and leads to
an immediate response in reaction rate. The pro-catalysts can thus autonomously respond to signals
from the environment. A next step in responsive catalysis would be autonomous or controlled
deactivation of the activated catalyst, to allow for transient signal amplification. We are currently
working on a system to gain reversible control over catalyst activity. We envision that our design for
organocatalysts that can be selectively activated by specific signals may be applied to create systems
and materials that can respond to their environment, as the next step towards communication
between artificial chemical systems.
Experimental

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Instrumentation and characterization. NMR spectra were recorded on an Agilent-400 MR DD2 (400
1
13
MHz for H and 100.5 MHz for C) at 298 K using residual protonated solvent signals as internal
standard.
Data availability. Data relevant to the findings of this study are available from the corresponding
author on request.
Electronic Supplementary Information (ESI)
General methods, synthesis of the pro-prolines, release of the catalysts by the signals, aldol
reactions, Michael reactions, reaction kinetics, NMR spectra.
Acknowledgments
This work was supported by the Netherlands Organization for Scientific Research through a VIDI
grant and by the European Research Council (ERC consolidator grant 726381). We thank Dr. Stephen
Eustace for help with NMR measurements.
Author contributions
C.M., F.T. and R.E. conceived the research. R.E. directed the research. C.M. and F.T. carried out the
experiments. R.E. revised the manuscript; C.M. and F.T. wrote the manuscript, all authors
commented on the work and the manuscript.
Competing financial interests
The authors declare no competing financial interests.
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Chemical Science
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DOI: 10.1039/C8SC02019A
Activation of the responsive organocatalyst proline by three different signals allows
temporal control over chemical reaction kinetics.

Chemical Science
Page 14 of 14
View Article Online
DOI: 10.1039/C8SC02019A
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3x23mm (300 x 300 DPI)