Cysteine Racemization during Peptide Synthesis
J . Org. Chem., Vol. 62, No. 13, 1997 4311
from the oxazolone, and acylation of the activated species
and/or the oxazolone with an incoming amine nucleo-
phile, which is also a base. The more activated species
couple more rapidly, but are also more prone to racemize.
The presence of base gives dual and opposite effects,
because while base catalyzes more rapid acylation, it also
leads to more rapid epimerization.
All of the phenomena described in the above paragraph
are exacerbated with protected activated cysteine; no
further epimerization occurs once cysteine is incorporated
within the peptide chain. Those activation protocols that
involve the presence of base are likely to result in
measurable cysteine racemization. As might be expected,
the level of racemization decreases by using less base,
weaker base, and eliminating preactivation. J ones and
Kovacs, with their respective co-workers, have suggested
that the â-sulfur of cysteine stabilizes, possibly via a five-
OSu (1.15 g, 3.4 mmol) in CH
min to a yellowish solution of H-D-Cys(Xan)-OH (0.96 g, 3.2
mmol) in H O-CH CN (1:1, 40 mL) plus Et N (1.06 mL, 7.6
3
CN (20 mL) was added over 30
2
3
3
mmol). The reaction mixture was stirred at 25 °C for 3 h,
adjusted to pH 3.5 by addition of 10% aqueous citric acid
solution, and concentrated under reduced pressure. The
resultant precipitate was extracted with EtOAc (3 × 100 mL),
2
washed with H O (2 × 100 mL) and brine (1 × 100 mL), and
2 4
dried (Na SO ). Evaporation of organic solvent gave a white
solid that was purified further by silica gel chromatography
CHCl -MeOH ) 30:1, R ) 0.11): yield 1.21 g (72%); mp 117-
20 °C; R [CHCl -MeOH (10:1)] 0.48; H NMR (CD
δ 12.87 (broad s, COOH), 7.87 (d, J ) 7.5 Hz, 2H), 7.75 (d, J
8.4 Hz, 1H), 7.70 (d, J ) 7.5 Hz, 2H), 7.10-7.47 (m, 12H),
.48 (s, 1H), 4.18-4.30 (m, 3H), 4.03-4.10 (m, 1H), 2.81 (dd, J
) 4.5 and 13.5 Hz, 1H), 2.64 (dd, J ) 9.9 and 13.5 Hz, 1H).
Anal. Calcd. for C31 S (523.61): C, 71.11; H, 4.81; N,
(
1
3
f
1
f
3
3 3
SOCD )
)
5
H
25NO
5
2.68; S, 6.12. Found: C, 70.96; H, 4.76; N, 2.65; S, 6.00.
r
N -(9-F lu or en ylm eth yloxyca r bon yl)-S-(9H-xa n th en -9-
yl)cystein e P en ta flu or op h en yl Ester [F m oc-Cys(Xa n )-
OP fp ]. N,N′-Dicyclohexylcarbodiimide (DCC) (0.77 g, 3.7
membered ring, an anion at the R-carbon of an activated
cysteine derivative.8
b-e
Such insights are of peripheral
mmol) was added in small portions to a suspension of Fmoc-
value in providing a semiquantitative rationalization of
the experimental results reported in the present work.
10b
Cys(Xan)-OH
(1.86 g, 3.6 mmol) and 2,3,4,5,6 pentafluoro-
Cl (70 mL)
phenol (0.79 g, 4.3 mmol) in freshly distilled CH
2
2
over 10 min. A clear solution formed immediately, followed
by precipitation about 2 min later. The reaction mixture was
stirred under N at 25 °C overnight, filtered to remove the
2
Con clu sion s
Our work provides some cautionary information that
is of both mechanistic and practical significance. We are
able to define effective compromise conditions that may
be adopted to manual and automated solid-phase syn-
thesis. Racemization of cysteine by whatever coupling
protocol can be minimized by the following: (i) using as
insoluble urea, concentrated to ∼10 mL under reduced pres-
sure, and then stored at 4 °C for 2 h. A new filtration removed
further urea, and the filtrate was diluted with hexane (20 mL)
and stored at 4 °C for 4 h. The resultant TLC-pure white
2 2
precipitate was collected by filtration, washed with CH Cl -
hexane (1:2, 3 × 5 mL), and dried in vacuo: yield 2.32 g (94%);
1
mp 151-153 °C; R
f
[hexane-EtOAc (3:1)] 0.61; H NMR
solvent CH
2
Cl
2
-DMF, with the minimal amount of DMF
(CDCl ) δ 7.77 (d, J ) 7.5 Hz, 2H), 7.58 (d, J ) 7.5, 2H), 7.22-
3
consistent with solubility of derivatives; (ii) avoiding
preactivation in BOP, HATU, or HBTU-mediated (and
related) protocols; (iii) replacing the traditional DIEA or
NMM base with TMP. Once a cysteine residue has been
incorporated safely, there appears to be little risk for
further racemization at steps to couple additional amino
acids.
7.45 (m, 8H), 7.11 (dd, J ) 3.3 and 7.8 Hz, 4H), 5.38 (s, 1H),
5.14 (d, J ) 8.1 Hz, 1H), 4.62 (dd, J ) 6.0 and 13.5 Hz, 1H),
4
6
.41 (d, J ) 6.9 Hz, 2H), 4.21 (t, J ) 6.9 Hz, 1H), 2.88 (d, J )
.3 Hz, 2H). Anal. Calcd for C37
24 5 5
H F NO S (689.66): C, 64.44;
H, 3.51; F, 13.77; N, 2.03; S, 4.65. Found: C, 64.57; H, 3.71;
F, 13.01; N, 2.26; S, 4.30.
r
N -(9-Flu or en ylm eth yloxycar bon yl)-S-(2,4,6-tr im eth ox-
yben zyl)cystein e P en ta flu or op h en yl Ester [F m oc-Cys-
(
Tm ob)-OP fp ]. DCC (0.88 g, 4.3 mmol) was added in five
1
4b
portions over 10 min to a solution of Fmoc-Cys(Tmob)-OH
Exp er im en ta l Section
(
2.13 g, 4.1 mmol) and 2,3,4,5,6-pentafluorophenol (0.90 g, 4.8
mmol) in freshly distilled CH Cl (35 mL). The reaction
mixture was stirred under N at 25 °C overnight, and further
Most of the materials and general synthetic and analytical
procedures have been described in our earlier publica-
2
2
2
1
0b,11b,14,15
14b
tions.
OH
Fmoc-Cys(Tmob)-OH
and Fmoc-Cys(Xan)-
steps followed very closely the above procedure for the corre-
sponding Cys(Xan) derivative: yield 2.53 g (90%); mp 108-
110 °C; R
(d, J ) 7.5 Hz, 2H), 7.61 (d, J ) 7.5 Hz, 2H), 7.26-7.41 (m,
6H), 6.13 (s, 2H), 5.94 (d, J ) 7.8 Hz, 1H), 4.97 (m, 1H), 4.49
(d, J ) 6.9 Hz, 2H), 4.26 (t, J ) 6.9 Hz, 1H), 3.79 (s, 9H), 3.10
(dd, J ) 4.5 and 14.4 Hz, 1H), 2.95 (dd, J ) 7.8 and 14.4 Hz,
1H). Anal. Calcd for C34
4.09; F, 13.77; N, 2.03; S, 4.65. Found: C, 59.00; H, 4.16; F,
13.50; N, 2.20; S, 4.81.
1
0b
were made in our laboratory as described previously,
and other protected amino acid derivatives were commercially
available. H NMR spectra were recorded at 300 MHz using
3 3
either CDCl or CD OD as solvents. Fast atom bombardment
mass spectrometry (FABMS) to characterize synthetic peptides
was carried out with glycerol or thioglycerol matrices being
used to obtain both positive and negative ion spectra. El-
emental analyses were performed by M-H-W Laboratories,
Phoenix, AZ.
1
f
[hexane-EtOAc (3:1)] 0.40; H NMR (CDCl
3
) δ 7.74
1
28 5 7
H F NO S (689.66): C, 59.21; H,
Thin-layer chromatography was performed on Analtech or
Merck silica gel GF plates (250 µm, 10 × 20 cm), and
compounds were observed by fluorescence quenching and by
spraying with a dilute ethanolic ninhydrin solution. Analytical
HPLC were carried out on C-18 columns.
Dih yd r ooxytocin (H-Cys-Tyr -Ile-Gln -Asn -Cys-P r o-Leu -
Gly-NH ). The detailed experimental design, HPLC docu-
2
mentation (Figure 1), and essential conclusions are described
in the text. In brief, Fmoc-Cys(Xan)-Tyr(tBu)-Ile-Gln-Asn-Cys-
(Xan)-Pro-Leu-Gly-PAL-PEG-PS (300 mg, 0.15 mmol/g initial
loading) was assembled by Fmoc chemistry, with 1-h couplings
in DMF of all residues [except that Asn and Gln were
incorporated as their corresponding Pfp esters (with HOBt,
1:1 ≡ 6 equiv), and Cys as specified] mediated by BOP/HOBt/
NMM (4:4:8 equiv with respect to peptide-resin; 5-min preac-
tivation). Cleavage/deprotection with reagent R was carried
out for 1 h at 25 °C. The filtrate from the cleavage reaction
S-(9H -Xa n t h en -9-yl)-D-cyst ein e [H -D-Cys(Xa n )-OH ].
.
.
Starting with D-cysteine H
previously described
2
O HCl (2.0 g, 11.4 mmol), the
procedure for the corresponding
compound was followed exactly: yield 2.87 g (84%); mp 175
1
0b
L
1
°
C dec; R
f
2 3
[MeOH-H O (4:1)] 0.78; H NMR (CD OD) δ 7.51-
7
7
1
1
.58 (dd, J ) 7.5 and 12.9 Hz, 2H), 7.31 (t, J ) 7.5 Hz, 2H),
.11-7.17 (m, 4H), 5.48 (s, 1H), 3.52 (dd, J ) 4.2 and 7.8 Hz,
H), 2.97 (dd, J ) 4.2 and 14.4 Hz, 1H), 2.85 (dd, J ) 7.8 and
was evaporated partially under a stream of N
CH Cl (1 mL for 20 mg peptide-resin), and then precipitated
with anhydrous Et O (10 mL). The procedure of adding CH
Cl followed by Et O precipitation was repeated a total of three
2
, diluted with
4.4 Hz, 1H). Anal. Calcd. for C16
H
15NO
3
S (301.36): C, 63.77;
2
2
H, 5.02; N, 4.65; S, 10.64. Found: C, 63.18; H, 5.93; N, 4.45;
S, 9.96.
2
2
-
2
2
r
N -(9-F lu or en ylm eth yloxyca r bon yl)-S-(9H-xa n th en -9-
times, in order to remove all low molecular weight organic
compounds. The residue was dissolved in the mixture of
yl)-D-cystein e [F m oc-D-Cys(Xa n )-OH]. A solution of Fmoc-