3-H-[1,2]Dithiole as a new anti-trypanosoma cruzi chemotype: Biological and mechanism of action studies

Article abstract of DOI:10.3390/molecules200814595

The current pharmacological Chagas disease treatments, using Nifurtimox or Benznidazole, show limited therapeutic results and are associated with potential side effects, like mutagenicity. Using random screening we have identified new chemotypes that were able to inhibit relevant targets of the Trypanosoma cruzi. We found 3H-[1,2]dithioles with the ability to inhibit Trypanosoma cruzi triosephosphate isomerase (TcTIM). Herein, we studied the structural modifications of this chemotype to analyze the influence of volume, lipophilicity and electronic properties in the anti-T. cruzi activity. Their selectivity to parasites vs. mammalian cells was also examined. To get insights into a possible mechanism of action, the inhibition of the enzymatic activity of TcTIM and cruzipain, using the isolated enzymes, and the inhibition of membrane sterol biosynthesis and excreted metabolites, using the whole parasite, were achieved. We found that this structural framework is interesting for the generation of innovative drugs for the treatment of Chagas disease.

Full text of DOI:10.3390/molecules200814595

Molecules 2015, 20, 14595-14610; doi:10.3390/molecules200814595
OPEN ACCESS
molecules
ISSN 1420-3049
www.mdpi.com/journal/molecules
Article
3-H-[1,2]Dithiole as a New Anti-Trypanosoma cruzi Chemotype:
Biological and Mechanism of Action Studies
Marcos Couto 1, Carina Sánchez 1, Belén Dávila 1, Valentina Machín 1, Javier Varela 1,
Guzmán Álvarez 1,†, Mauricio Cabrera 1,†, Laura Celano 2, Beatriz Aguirre-López 3,
Nallely Cabrera 3, Marieta Tuena de Gómez-Puyou 3, Armando Gómez-Puyou 3,
Ruy Pérez-Montfort 3, Hugo Cerecetto 1,‡,* and Mercedes González 1,*
1
Grupo de Química Medicinal-Laboratorio de Química Orgánica, Facultad de Ciencias,
Universidad de la República, Iguá 4225, Montevideo C.P. 11400, Uruguay;
E-Mails: mcoutosire@gmail.com (M.C.); caarisanchez@hotmail.com (C.S.);
BelenDav@gmail.com (B.D.); valeentiina.m@gmail.com (V.M.); jvarelaubillos@gmail.com (J.V.);
guzmanalvarezlqo@gmail.com (G.Á.); mauriciocabreracedres@gmail.com (M.C.)
2
Laboratorio de Enzimología, Facultad de Ciencias, Universidad de la República, Iguá 4225,
Montevideo C.P. 11400, Uruguay; E-Mail: lcelano@fcien.edu.uy
3
Departamento de Bioquímica y Biología Estructural, Instituto de Fisiología Celular,
Universidad Nacional Autónoma de México, Ciudad de México 04510, Mexico;
E-Mails: bety.aguirre.lopez@gmail.com (B.A.-L.); ncabrera@ifc.unam.mx (N.C.);
mtuena@ifc.unam.mx (M.T.G.-P.); apuyou@ifc.unam.mx (A.G.-P.);
ruy@ifc.unam.mx (R.P.-M.)
†
Current address: Laboratorio de Moléculas Bioactivas, CENUR Litoral Norte,
Universidad de la República, Ruta 3 (km 363), Paysandú C.P. 60000, Uruguay.
‡
Current address: Área de Radiofarmacia, Centro de Investigaciones Nucleares,
Universidad de la República, Mataojo 2055, Montevideo C.P. 11400, Uruguay.
* Authors to whom correspondence should be addressed; E-Mails: hcerecetto@gmail.com or
hcerecetto@cin.edu.uy (H.C.); megonzal@fq.edu.uy or mgonzalezhormaizteguy@gmail.com (M.G.);
Tel.: +598-2525-8618 (H.C. & M.G.); Fax: +598-2525-0749 (H.C. & M.G.).
Academic Editor: Christophe Dardonville
Received: 29 May 2015 / Accepted: 7 August 2015 / Published: 12 August 2015
Abstract: The current pharmacological Chagas disease treatments, using Nifurtimox or
Benznidazole, show limited therapeutic results and are associated with potential side effects,

Molecules 2015, 20
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like mutagenicity. Using random screening we have identified new chemotypes that were
able to inhibit relevant targets of the Trypanosoma cruzi. We found 3H-[1,2]dithioles with
the ability to inhibit Trypanosoma cruzi triosephosphate isomerase (TcTIM). Herein, we
studied the structural modifications of this chemotype to analyze the influence of volume,
lipophilicity and electronic properties in the anti-T. cruzi activity. Their selectivity to parasites
vs. mammalian cells was also examined. To get insights into a possible mechanism of action,
the inhibition of the enzymatic activity of TcTIM and cruzipain, using the isolated enzymes,
and the inhibition of membrane sterol biosynthesis and excreted metabolites, using the
whole parasite, were achieved. We found that this structural framework is interesting for the
generation of innovative drugs for the treatment of Chagas disease.
Keywords: anti-T. cruzi activity; 3H-1,2-dithiole; triosephosphate isomerase; cruzipain;
membrane sterol biosynthesis; 1H-NMR metabolomics
1. Introduction
American trypanosomiasis, Chagas disease, is transmitted to humans by bites and concomitant
defecation of different triatomine species, which carry the flagellate parasite Trypanosoma cruzi (T. cruzi)
in their contaminated feces. It is an endemic disease that affects nearly 10 million people, generating
health, economic and social problems in the affected countries [1]. Although the disease is native to Central
and South America, nowadays both the population mobility between Latin America and the rest of the
world, or the residence in endemic areas, have made it a worldwide problem.
Like other neglected diseases, it is a major health problem resulting from inadequate therapy and the
lack of an effective vaccine [2,3]. Treatment of Chagas disease requires long-term dosage regimes with
nifurtimox (Nfx; Lampit, Bayer Healthcare, Leverkusen) or benznidazole (Bnz; LAFEPE, Pernambuco),
however, severe side effects often prompt the discontinuation of the treatment [4]. Among other relevant
problems, these drugs exhibit significant mutagenic effects, and in some studies have been shown to be
tumorigenic or carcinogenic [5].
As part of our ongoing program in search of small molecular weight compounds that could provide
leads in the design of new drugs for the treatment of Chagas disease [6], we undertook a massive
screening for inhibitors of Trypanosoma cruzi triosephosphate isomerase (TcTIM). TcTIM is considered
a potential target for anti-trypanosomal drugs [7–9]. This enzyme is involved in the glycolysis pathway
of the parasite. We evaluated nearly 300 compounds from our in-house library against TcTIM, identifying
good inhibitors [10–13] and also hits with the ability to act as potential inhibitors, after further structural
modifications. Of these hits we identified two compounds with an original framework in the context of
anti-trypanosomal agents, the 3H-[1,2]dithiole heterocycles. These are compounds 1 and 2 (Figure 1A) [14],
which, at 25 μM, had high percentages of TcTIM inhibition, 33% and 48%, respectively. These compounds
are structurally related to one of our best TcTIM inhibitors, the [1,2,4]thiadiazol-5(4H)-one 3
(Figure 1B) [11].

Molecules 2015, 20
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O
(A)
S
S
S S
O
Me
Ph
Me
S
O
O
S
O
Me
(1)
(2)
O
N
S
S
(B)
(C)
O
S
N
H
H3C
(3)
S
N
N
Me
(4)
Figure 1. (A) Structures of the new hits, belonging to 3H-[1,2]dithiole chemotype and
identified as TcTIM inhibitors; (B) Structure of our best TcTIM inhibitor described to
date [11]; (C) Structure of oltipraz.
On the other hand, the 3-H-1,2-dithiole heterocycle has been previously described as the framework
responsible for schistosomicidal activity, e.g., in oltipraz (4, Figure 1C) [15].
However, according to our knowledge, there are no descriptions about the use of this kind of heterocycle
as a drug pharmacophore for Chagas disease.
The present study was undertaken in order to investigate the potential of different 3H-[1,2]dithiole
derivatives as anti-T. cruzi agents and also to attempt to elucidate their mechanism(s) of action.
2. Results and Discussion
2.1. Synthesis of 3-H-[1,2]Dithiole Derivatives
For the synthesis of the 3H-[1,2]dithiole derivatives 1, 2 and 5–21 (Figure 2), we used anethole as
starting material [16]. From the dithiolethione 6 we prepared esters 1, and 7–9 via coupling with
DCC/DMAP [14]. The (E)-3-[1-(alkylthio)propylidene]-3H-[1,2]dithioles 2, and 13–17 were obtained
using different α-haloketones in the presence of excess potassium iodide, according to previously reported
protocols, starting from dithiolethiones 5 or 6 [17]. Additionally, in these reactions, products 10–12 and
iodide salts 18–21 were also isolated. All the new compounds, 12, 14, 17, 18, and 21, were characterized
by 1H-NMR, 13C-NMR, COSY, HSQC, and HMBC experiments, and MS. According to H-H coupling
constants and NOE-diff experiments, the compounds were obtained as the E-isomer around the alkenic
moiety. The purity of the synthesized compounds was established by TLC and elemental analysis (C, H, N).
Only compounds with analytical results within ±0.4 of the theoretical values were considered pure
enough for biological testing.

Molecules 2015, 20
14598
S
DMF
S8 /
S
O
OR
R'
145 oC
S
O
R= Me, 5
R= H,
1
7
HCl
DCC/DMAP
S
N
S
215 oC
6
O
R'
S
O
(1 equiv)
X
(HO)n
O
R"
X= Cl or Br
n= 0, 8
n= 1, 9
KI (17 equiv)
K2CO3 (17 equiv)
acetone reflux / 3 h
S
S
S
S
S
S
S
S
O
O
I
"R
O
O
"R
O
O
HO
HO
+
+
+
R"
S
S
R"
R"
S
S
O
R"= Me,
= Ph,
10
11
R"= Me,
2
R"= Ph,
13
R"= 2-naphthyl, 18
O
O
R"
R"
= 2-naphthyl, 14
= 2-naphthyl, 12
O
(1 equiv)
X
S
S
S
S
S
S
R"
O
I
MeO
MeO
MeO
+
R"
S
S
R"
KI (17 equiv)
K2CO3 (17 equiv)
acetone reflux / 3 h
S
O
5
R"= Me,
= Ph,
15
16
R"= Me,
= Ph,
19
20
X= Cl or Br
O
R"
= 2-naphthyl, 17
= 2-naphthyl, 21
Figure 2. Synthetic procedures used to prepare the dithiole derivatives.
2.2. In Vitro Biological Studies
To evaluate the anti-trypanosomal activity of the synthesized 3H-[1,2]dithioles we used T. cruzi,
Tulahuen 2 strain (discrete typing unit, DTU, TcVI [18]) in the epimastigote form. Initially working at
25 µM, the IC50 was determined for compounds showing 70% of growth inhibition at this concentration
(Table 1) [19]. To establish the selectivity of the compounds against the parasite, unspecific cytotoxicity
against mammalian cells (J774.1 murine macrophages) was studied for the most relevant derivatives.
The selectivity indexes (SI) were also determined (Table 1).
In general, the 3H-[1,2]dithiole-3-thiones had modest activity against T. cruzi, with phenols 6 and 9
showing the lowest IC50. Additionally, they had some level of parasite selectivity, SI ~ 2.0 (Table 1).
The iodide salts 18–21 were also inactive against T. cruzi (Table 1) probably as result of their higher
hydrophilicities and a lower ability to cross the cellular membrane.
On the contrary, the 3-propylidene-3H-[1,2]dithioles displayed noteworthy activity against the
epimastigotes of T. cruzi, being equipotent to the reference trypanosomicidal drugs Nfx and Bnz
(IC50,Nfx = 8.0 ± 1.0 μM, IC50,Bnz = 7.0 ± 1.0 μM [19]). Again, phenols 13 and 14 were the most
potent derivatives and, additionally, they had the highest selectivity (SI > 6.0). Consequently, the
3-(alkylthio)propylidene-3H-[1,2]dithiole structural framework emerges as a new hit for the
development of anti-trypanosomal drugs.

Molecules 2015, 20
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Table 1. Effects of the studied compounds against epimastigotes of T. cruzi (Tulahuen 2
strain) and murine macrophages (J774.1). The experiments were done in triplicate.
IC50 against
T. cruzi (μM)
>25
IC50 against
Family
Derivative
SI
miLogP a
Macrophages (μM)
b
1
-
-
4.66
3.57
3.04
5.21
7.26
7.20
3.12
4.72
5.91
3.16
6.28
8.50
3.61
6.82
8.77
3.25
4.07
2.60
3.78
5
>25
-
-
2.0
-
6
25.0 ± 1.0
>25
51 ± 2
7
-
3H-[1,2]dithiole-3-thiones
8
>25
-
-
9
25.0 ± 0.5
>25
63 ± 2
2.5
-
10
11
12
2
-
>25
-
-
>25
-
-
7.7 ± 1.4
5.5 ± 0.9
4.9 ± 1.1
5.9 ± 1.2
>25
24 ± 1
3.1
6.2
12.8
<4.1
-
13
14
15
16
17
18
19
20
21
34.0 ± 0.5
63 ± 2
3-(alkylthio)propylidene-
3H-[1,2]dithioles
<24.0
-
-
-
-
-
-
>25
-
>25
>25
-
-
-
[1,2]dithiolium iodide
>25
>25
a LoP determined using Molinspiration online property calculation toolkit [20]. b -: not determined.
The lipophilicity seems to be partially related with the anti-Trypanosoma cruzi activity. The three
most hydrophilic compounds, 6, 10 and 20, were inactive against the whole parasite. The same occurs
with the most lipophilic compound, 17. Similarly with the unspecific toxicity, the most lipophilic
compounds 9 and 14 were the least cytotoxic. This physicochemical property is not the only related to
the activity because no statistically significant correlation could be established.
2.3. Accessing the Mechanism of Action of the New Active Anti-T. cruzi Agents
In order to identify the potential modes of action of these new anti-T. cruzi agents, we made different
kinds of experiments. Firstly, the compounds were tested as inhibitors of two relevant and validated
targets of T. cruzi: the glycolytic enzyme triosephosphate isomerase (TcTIM) and the protease cruzipain.
Besides the studies on the isolated enzymes, we included two different types of experiments using
the entire parasites. We studied the effects of the compounds on the pathways of membrane sterol
biosynthesis. Also, we analyzed the modifications of the excreted metabolites.
2.3.1. Inhibition of TcTIM
In order to investigate if the 3H-[1,2]dithioles inhibit TcTIM, we initially tested the inhibitory
capacity of the compounds at a concentration of 200 μM and then at 25 μM. If the compound inhibited
the enzymatic activity by more than 60% at 25 μM, the IC50 was determined (Table 2) [10–12].

Molecules 2015, 20
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Table 2. Inhibition of enzymatic activity of TcTIM and cruzipain. The experiments were
done in triplicate.
TcTIM
Cruzipain
Family
Derivative
a
a
a
% Inhib200
% Inhib25
IC50 (μM)
% Inhib100
IC50 (μM)
b
1
77
86
71
14
ns c
50
70
ns
33 ± 1.9
80 ± 2.3
35 ± 3.0
-
-
21.3 ± 0.3
89.0 ± 0.5
59.3 ± 0.3
78.4 ± 0.6
58.0 ± 0.1
77.9 ± 0.6
73.9 ± 0.1
96.3 ± 0.7
91.5 ± 0.6
91.3 ± 2.8
61.0 ± 0.3
66.5 ± 0.3
85.4 ± 0.2
62.3 ± 0.3
82.6 ± 0.6
77.1 ± 0.1
90.5 ± 0.7
72.0 ± 0.1
-
5
1.2 ± 0.05
4.0 ± 2.0
6
-
-
7
-
-
3H-[1,2]dithiole-3-thiones
8
-
-
-
9
-
-
-
10
11
12
2
61 ± 1.0
-
-
-
-
17.1 ± 3.6
70
72
86
70
86
77
81
70
95
ns
ni d
-
21.6 ± 6.1
48 ± 4.0
75 ± 6.0
38 ± 3.5
62 ± 3.0
63 ± 0.1
52 ± 2.5
75 ± 0.3
73 ± 3.2
-
-
15.5 ± 2.7
13
14
15
16
17
18
19
20
21
3.35 ± 0.14
-
-
-
3-(alkylthio)propylidene-
3H-[1,2]dithioles
-
15.1 ± 2.5
7.53 ± 0.10
-
-
-
11.03 ±0.03
-
3.26 ± 0.05
11.3 ± 0.6
-
[1,2]dithiolium iodide
-
-
65
-
90.2 ± 0.6
17.7 ± 3.9
a
b
c
% Inhib: percentage of enzymatic inhibition at 200, 100 or 25 μM. -: not determined. ns: not studied.
d ni: not inhibition.
Different levels of TcTIM inhibition were observed with the compounds. In each compound family,
one or two derivatives displayed an excellent ability to inhibit this enzyme, e.g., the [1,2]dithiole-3-thione
5, the 3-propylidene[1,2]dithioles 13 and 16, and [1,2]dithiolium salts 18 and 19. The best inhibitor was
thione 5, which had the same potency as 3 (Figure 1) [11]. Interestingly, excluding derivative 13, no
relationship between anti-epimastigote activity, of the most active compounds, and inhibition of TcTIM
was observed. In the case of the 3-propylidene[1,2]dithiole 13, the IC50 against the whole parasite and
TcTIM are very similar suggesting that the mechanism of action of this compound could be the inhibition
of this enzyme.
However, it was not possible to establish a clear relationship between anti-epimastigote activities and
the TcTIM inhibition activity for the whole series of studied compounds.
2.3.2. Inhibition of Cruzipain
Initially, we tested the dithioles as inhibitors of the protease cruzipain from T. cruzi at a concentration
of 100 μM. If the compound inhibited more than 85% of enzyme activity at this dose, the IC50 was
determined (Table 2) [21].

Molecules 2015, 20
14601
In each family of compounds, two or three derivatives inhibit cruzipain in the micromolar range
([1,2]dithiole-3-thione 5, 11 and 12, 3-propylidene[1,2]dithioles 2 and 15, and [1,2]dithiolium salts 19
and 21). The best inhibitor was thione 5 which displayed low micromolar IC50 value. With the exception
of compounds 2 and 15 which inhibit T. cruzi epimastigotes and cruzipain with IC50 values of the same
order of magnitude (two-fold higher for cruzipain), no relationship between anti-epimastigote activity
and cruzipain inhibition was observed.
Interestingly, [1,2]dithiole-3-thione 5 and 1 [1,2]dithiolium salt 19, which are inactive against the
whole parasite, were able to inhibit both TcTIM and cruzipain in the low micromolar range.
2.3.3. Inhibition of Membrane Sterol Biosynthesis
We analyzed the capacity of the most active compounds against epimastigotes (3-propylidene[1,2]
dithioles 2, and 13–15) to inhibit any of the enzymes involved in the biosynthesis of membrane sterols.
To do so, we analyzed the accumulation or depletion of some intermediates or final products of this
biochemical pathway. Qualitative analyses were performed by thin layer chromatography (TLC) [22].
In these experiments, derivative 2 was able to accumulate squalene and deplete ergosterol (Figure 3), as
did the positive control terbinafine, a well-known antifungal with anti-T. cruzi activity. According to these
results, a possible target might be the enzyme squalene-2,3-epoxidase, which catalyzes the conversion
of squalene into lanosterol [23]. Compared to control, the rest of the compounds studied did not show any
changes in the levels of the sterols and intermediates analyzed.
Squalene
Lanosterol Cholesterol Ergosterol
2
15
14
13
Control
Terbinafine
Figure 3. Example of a TLC for the study of changes in membrane sterols of T. cruzi.
The lane labeled Control had untreated parasites. Terbinafine was used as a control of an
accumulator of squalene for T. cruzi.
2.3.4. 1H-NMR Metabolomic Studies
To gain insight into the changes promoted by the active 3-propylidene[1,2]dithioles 2 and 14 in some
1
biochemical pathways, the metabolites excreted by the parasite using H-NMR spectroscopy were

Molecules 2015, 20
14602
analyzed [22]. Changes in the excreted metabolites by T. cruzi Y strain (DTU Tc II, [24]), when the
parasite cells were exposed to a bioactive compound, could be indicative of the modification of the
biochemical pathway(s) by the agents [25,26]. Spectra of the cell-free milieu of treated parasites were
compared with those of the untreated T. cruzi-free milieu as the control. We focused mainly on the
changes of excreted salts of the carboxylic acids, lactate (Lac), acetate (Ace), pyruvate (Pyr),
and succinate (Succ) and the amino acids, alanine (Ala) and glycine (Gly), among the most relevant
modified metabolites.
Clearly, derivative 2 significantly decreased the levels of excreted Gly and Pyr. However, derivative
14 did not modify the excreted catabolites when compared to the control (Table 3).
Table 3. Concentrations of metabolites excreted, carboxylic acids and amino acids, in the
1
metabolomic studies using H-NMR (for details see Experimental Section). Each run was
made in triplicate.
Compound a/
Gly
Succ
Pyr
Ace
Ala
Lac
Metabolite b
2
14
Control d
2.11 ± 0.11 c 5.83 ± 0.24
8.00 ± 0.35 23.28 ± 0.86 17.76 ± 0.61 8.73 ± 0.37
9.47 ± 0.53 26.41 ± 1.44 20.65 ± 1.27 10.41 ± 0.58
8.89 ± 0.27 26.06 ± 2.07 21.38 ± 1.15 9.69 ± 0.68
2.48 ± 0.14
2.48 ± 0.11
7.34 ± 0.65
6.64 ± 0.18
a Working at the IC50 × 2 for each fraction. b The concentrations of the metabolites were calculated using DMF
c
as the internal standard (for details see Experimental Section). Statistically significant changes (p < 0.05,
Student’s t-test) are shown in bold characters. d Untreated parasite.
In the metabolic pathways of T. cruzi the depletion of both Gly and Pyr, as occurs with the
3-propylidene[1,2]dithiole 2, probably indicates that some enzymes involved in the metabolism of
L-threonine in the mitochondrion could be the potential targets of this compound [27]. The inhibition of
L-threonine dehydrogenase (LTD) or acetyl-CoA:glycine C-acetyltransferase (ACGAT) could not only
produce the reduction of excreted Gly, but also the production of acetyl-CoA (ACoA), in the
mitochondrion, which are further used in the like-Krebs cycle. Consequently, if the ACoA is reduced,
by inhibition of LTD or ACGAT, the parasite needs to use the Pyr entering the organelle from the cytosol
and transform it to ACoA via the pyruvate dehydrogenase complex (PDC), to maintain the energetic
requirements (Figure 4). This fact produces a concomitant depletion of excreted Pyr. In order to confirm
this metabolic pathway, more experiments must be done, like the inhibition of LTD o ACGAT.
MITOCHONDRION
PARASITIC
CYTOSOL
CELL
like-Krebs
cycle
PDC
Pyr
ACoA
GLYCOSOME
Gly
ACGAT
LTD
L-Threonine
Figure 4. Possible site of action for derivative 2 in the biochemical pathways, according to
the 1H-NMR metabolomic studies [27].

Molecules 2015, 20
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3. Experimental Section
3.1. General
Reagents were purchased from Aldrich and used without further purification. Melting points were
performed using an Electrothermal Engineering Ltd melting point apparatus (Rochford, UK), and the
results were uncorrected. 1H-NMR and 13C-NMR spectra were recorded in the indicated solvent with a
Bruker DPX 400 MHz spectrometer (Bruker, Rheinstetten, Germany). Chemical shifts are quoted in
parts per million downfield from TMS and the coupling constants are in Hertz. Structural assignments
were corroborated by HMBC and HSQC experiments. All solvents were dried and distilled prior to use.
All the reactions were carried out in a nitrogen atmosphere. Reactions were monitored by TLC using
commercially available precoated plates (Merck Kieselgel 60 F254 silica, Darmstadt, Germany) and the
developed plates were examined under UV light (254 nm) or as iodine vapor stains. Column chromatography
was performed using a 200 mesh silica gel. To determine the purity of the compounds, microanalyses
were done on a Fisons EA 1108 CHNS–O instrument (Ipswich, UK) from vacuum-dried samples and
were within ± 0.4 of the values obtained by calculating their compositions. Compounds 1, 2, 5–11, 13, 15,
16, 19 and 20 were prepared following synthetic procedures previously reported [14,16,17].
3.2. General Synthetic Procedure for Compounds 12, 14, 17, 18, and 21
In a 25-mL round-bottom flask, under nitrogen atmosphere, a mixture of 2-bromo-2′-acetonaphthone
(1 equiv.), 5 or 6 (1 equiv.), K2CO3 (17 equiv.), KI (17 equiv.) and anhydrous acetone (10 mL per
0.2 mmol of naphthone) was stirred at reflux for 5 h. The solvent was then evaporated to dryness, and
the resulting residue was suspended in EtOAc (35 mL) and washed with 35 mL of water. Two extractions
of the water were performed with EtOAc (2 × 35 mL), and the organic layers were dried over Na2SO4,
evaporated in vacuo, and purified by column chromatography (SiO2, hexane:AcOEt, 7:3) to give the
desired products 12, 14, and 18 from compound 6, and 17, and 21 from compound 5.
5-[4-(2-Oxo-2-naphthylethyloxy)phenyl]-3H-[1,2]dithiole-3-thione (12). Yield: 29%; orange solid, mp:
130–133 °C; 1H-NMR (400 MHz, CDCl3) δ: 8.56 (s, 1H), 8.06 (dd, J = 8.6, 1.7 Hz, 1H), 8.03 (d, J = 7.8 Hz,
1H), 7.99 (d, J = 8.6 Hz, 1H), 7.94 (d, J = 8.2 Hz, 1H), 7.71–7.69 (m, 2H), 7.64 (d, J = 8.8 Hz, 3H), 7.41
13
(s, 1H), 7.07 (d, J = 8.9 Hz, 2H), 5.55 (s, 2H); C-NMR (100 MHz, CDCl3) δ: 215.3, 193.3, 172.7,
161.3, 136.1, 135.0, 132.4, 131.5, 130.0, 129.9, 129.7, 129.2, 128.7, 128.0, 127.5, 127.3, 125.1, 125.0,
124.9, 123.4, 115.8, 70.6. Anal. calc. for C21H14O2S3: C 63.9%, H 3.6%, S 24.4%. Found: C 64.0%,
H 3.7%, S 24.3%.
(E)-5-(4-Hydroxyphenyl)-3-[2-oxo-1-(2-oxo-2-naphthylethylthio)-2-naphthylethylidene]-3H-[1,2]dithiole
1
(14). Yield: 26%; orange oil; H-NMR (400 MHz, CDCl3) δ: 8.32 (s, 1H), 8.13 (s, 1H), 8.01 (s, 1H),
7.88 (dd, J = 8.4, 1.7 Hz, 1H), 7.81 (d, J = 8.8 Hz, 1H), 7.74 (d, J = 8.6 Hz, 2H), 7.69 (d,
J = 8.0 Hz, 2H), 7.66 (d, J = 1.8 Hz, 1H), 7.56 (d, J = 8.4 Hz, 2H), 7.53 (d, J = 1.2 Hz, 1H), 7.49–7.43
(m, 3H), 7.33 (d, J = 8.7 Hz, 2H), 6.74 (d, J = 8.7 Hz, 2H), 5.60 (s, 1H), 3.79 (s, 2H); 13C-NMR
(100 MHz, CDCl3) δ: 195.1, 189.7, 188.4, 167.0, 158.6, 135–115 (27 C), 42.2. Anal. calc. for
C33H22O3S3: C 70.4%, H 3.9%, S 17.1%. Found: C 70.1%, H 3.6%, S 17.3%.

Molecules 2015, 20
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5-(4-Hydroxyphenyl)-3-naphthoylmethylthio-[1,2]dithiolium iodide (18). Yield: 13%; red oil; 1H-NMR
(400 MHz, CDCl3) δ: 8.51 (s, 1H), 8.27 (d, J = 0.9 Hz, 1H), 8.11 (s, 1H), 7.81 (s,1 H), 7.80 (s, 1H),
7.56–7.50 (m, 5H), 7.01 (d, J = 8.6 Hz, 2H), 5.32 (s, 1H), 4.08 (s, 2H); 13C-NMR (100 MHz, CDCl3) δ:
188.1, 177.4, 168.2, 159.4, 140.0–110.0 (16 C), 33.5. Anal. calc. for C21H15IO2S3: C 48.3%, H 2.9%, S
18.4%. Found: C 47.9%, H 2.6%, S 18.3%.
(E)-5-(4-Methoxyphenyl)-3-[2-oxo-1-(2-oxo-2-naphthylethylthio)-2-naphthylethylidene]-3H-[1,2]dithiole
1
(17). Yield: 20%; yellow oil; H-NMR (400 MHz, CDCl3) δ: 8.34 (s, 1H), 8.15 (s, 1H), 8.03 (s, 1H),
7.91 (dd, J = 8.4, 1.7 Hz, 1H), 7.83 (d, J = 7.2 Hz, 1H), 7.76 (dd, J = 9.0, 3.1 Hz, 2H), 7.71 (d, J = 8.0 Hz,
2H), 7.68 (d, J = 1.8 Hz, 1H), 7.58 (d, J = 8.4 Hz, 2H), 7.55 (s, 1H), 7.52–7.45 (m, 2 H), 7.35 (d,
13
J = 8.7 Hz, 2H), 6.76 (d, J = 8.7 Hz, 2H), 4.00 (s, 3H), 3.81 (s, 2H); C-NMR (100 MHz, CDCl3) δ:
195.5, 185.2, 181.4, 170.0, 161.3, 139.4–114.5 (25 C), 111.2, 106.4, 55.4, 42.3. Anal. calc. for
C34H24O3S3: C 70.8%, H 4.2%, S 16.7%. Found: C 70.5%, H 3.9%, S 16.6%.
1
5-(4-Methoxyphenyl)-3-naphthoylmethylthio[1,2]dithiolium iodide (21). Yield: 17%; red oil; H-NMR
(400 MHz, CDCl3) δ: 8.57 (s, 1H), 8.12 (dd, J = 8.6, 1.7 Hz, 1H), 8.00 (d, J = 6.8 Hz, 1H), 7.95 (d,
J = 8.5 Hz, 1H), 7.92 (s, 1H), 7.69 (d, J = 8.9 Hz, 2H), 7.67 (s, 1H), 7.58–7.57 (m, 1H), 7.56 (s, 1H),
7.01 (d, J = 8.8 Hz, 2H), 4.04 (bs, 2H), 3.91 (s, 3H); 13C-NMR (100 MHz, CDCl3) δ: 190.1, 178.4, 167.2,
159.7, 140.0–110.0 (16 C), 54.9, 33.8. Anal. calc. for C22H17IO2S3: C 49.2%, H 3.2%, S 17.9%. Found:
C 48.9%, H 2.9%, S 17.6%.
3.3. Anti-T. cruzi Test in Vitro
We used epimastigotes of the Tulahuen 2 strain (DTU, Tc VI) growing in an axenic milieu
(BHI-Tryptose). Cells from a 5–7-day-old culture were inoculated in fresh culture milieu to give an
initial concentration of 1 × 106 cells/mL. The absorbance at 600 nm of the cells in culture was measured
every day. At day 5, the milieu was inoculated with different quantities of the compounds from a stock
solution in DMSO (DMSO concentration in the culture milieu never exceeded 0.4%). The control was
made in the presence of 0.4% DMSO and in the absence of compounds. Each concentration of compound
was evaluated in duplicate. At day 5, the absorbance of the culture was measured and related to the
control. The IC50 value was taken as the concentration of drug needed to reduce the absorbance ratio to 50%.
3.4. Unspecific in Vitro Cytotoxicity of Mammalian Cells
J774.1 murine macrophage cells (ATCC, Manassas, VA, USA) were grown in DMEM culture milieu
containing 4 mM L-glutamine and supplemented with 10% heat-inactivated fetal calf serum. The cells
were seeded in a 96-well plate (5 × 104 cells in 200 mL culture medium) and incubated at 37 °C in a 5%
CO2 atmosphere for 48 h, to allow cell adhesion prior to drug testing. Afterwards, cells were exposed
for 48 h to the compounds (25–400 μM) or vehicle for control (0.4% DMSO), and additional controls
(cells in medium) were used in each test. Cell viability was then assessed by measuring the mitochondria-
dependent reduction of MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) to
formazan. For this purpose, MTT in sterile PBS (0.2% glucose) pH 7.4 was added to the macrophages
to achieve a final concentration of 0.1 mg/mL and the cells were incubated at 37 °C for 3 h. After

Molecules 2015, 20
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removing the medium, formazan crystals were dissolved in 180 μL of DMSO and 20 μL of MTT buffer
(0.1 M glycine, 0.1 M NaCl, 0.5 mM EDTA, pH 10.5) and the absorbance at 560 nm was measured. The
IC50 was defined as the drug concentration at which 50% of the cells were viable, relative to the control
(no drug added), and was determined by analysis using OriginLab8.5® sigmoidal regression (% of viable
cells vs. logarithm of the compound concentration). Samples were performed in triplicate.
3.5. Inhibition of TcTIM
Expression and purification of protein: TcTIM was expressed in Escherichia coli and purified as
described in the literature [28]. After purification, the enzyme, dissolved in 100 mM triethanolamine,
10 mM EDTA and 1 mM dithiothreitol (pH 8), was precipitated with ammonium sulfate (75% saturation)
and stored at 4 °C. Before use, extensive dialysis against 100 mM triethanolamine/10 mM EDTA (pH 7.4)
was performed. Protein concentration was determined by absorbance at 280 nm (ε = 36,440 M−1·cm−1).
Enzymatic activity assays. Enzymatic activity was determined following the conversion of
glyceraldehyde 3-phosphate into dihydroxyacetone phosphate [7]. The decrease in absorbance at 340 nm
was followed in a multicell Cary spectrophotometer at 25 °C. The reaction mixture (1 mL, pH 7.4)
contained 100 mM triethanolamine, 10 mM EDTA, 0.2 mM NADH, 1 mM glyceraldehyde 3-phosphate,
and 0.9 units of α-glycerol phosphate dehydrogenase. The reaction was initiated by addition of 5 ng/mL
of the TcTIM.
For inactivation studies, TcTIM was incubated at a concentration of 5 mg/mL in a buffer containing
100 mM triethanolamine, 10 mM EDTA, pH 7.4 and 10% of DMSO at 36 °C. The mixture also contained
the compounds at the indicated concentrations. Compounds were dissolved in DMSO. After 2 h, 1 mL
was withdrawn and added to 1 mL of reaction mixture for the activity assay. None of the molecules
tested here affected the activity of α-glycerol phosphate dehydrogenase, the enzyme used for trapping
the product.
The IC50 value was taken as the concentration of drug needed to reduce the enzymatic activity to 50%.
The experiments were performed in triplicate.
3.6. Inhibition of T. cruzi Cruzipain
Cruzipain was purified to homogeneity from epimastigotes of the Tulahuen 2 strain by ConA-Sepharose
affinity chromatography, as previously described [29]. Cruzipain (2.5 μM ε = 58,285 M−1·cm−1) was
incubated in 50 mM acetate buffer pH 5.5 with 50 mM DTT and 100 μM inhibitor was added, shaking
the solution for 15 min at 27 °C. The derivatives were added diluted in DMSO, and the controls contained
the same solvent concentration. The concentration of DMSO never exceeded 1% in the reaction medium.
E-64 was used as a positive control of inhibition. Then, the fluorogenic substrate Z-Phe-Arg-AMC
(100 μM) was added and the fluorescence was measured during 10 min at intervals of 3 s (excitation
at 350 nm and emission at 460 nm) using a Varioskan Flash Spectrophotometer. From the slope of
the negative control, we calculated the total (100%) enzyme activity, while the slopes obtained in the
presence of the compounds yielded the percentage of remaining enzyme activity. The percentage of
enzyme inhibition was determined as 100% of remaining enzyme activity. The experiments were done
in duplicate.

Molecules 2015, 20
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3.7. Inhibition of Membrane Sterol Biosynthesis
The parasites, epimastigotes of Y strain of T. cruzi (DTU Tc II), were grown in 6 mL of BHT milieu
in culture bottles. Compounds at their respective IC50 were incubated for 72 h at 28 °C with the parasite,
starting from a parasitic load of 10 million per mL. A negative control was performed with parasites in
the absence of compounds. The parasites in the positive control were incubated with terbinafine
(IC50 = 44.7 μM), which has proven inhibitory activity on membrane sterol biosynthesis. The extraction
of membrane sterols was performed on completion of the incubation. For this purpose, the content of the
culture bottle was centrifuged at 3000 rpm for 10 min, the supernatant was discarded and the pellet was
suspended in sodium phosphate buffer solution (6 mL, 0.05 M, pH 7.4). Then it was centrifuged again
at 3000 rpm for 10 min and the supernatant was discarded. The resulting pellet was resuspended in a
chloroform/methanol (2:1) mixture (5 mL) and the suspension was kept at 4 °C for 12 h. Then, a
saturated NaCl solution (5 mL) was added and the mixture extracted once with chloroform (3 mL) and
once with hexane (3 mL) with care to avoid taking any aqueous phase. The extracted volume was applied
to a silica gel TLC plate. Chromatography was performed eluting with hexane, two runs to identify
squalene, and once with hexane/EtOAc (8:2) for ergosterol. The spots on the plate were revealed under
ultraviolet light or by exposure to iodine vapors. Also, controls and commercial samples of ergosterol,
lanosterol, cholesterol and squalene were run on the TLC plate [30]. The experiment was done in triplicate.
3.8. 1H-NMR Study of the Excreted Metabolites
For the 1H-NMR spectroscopic studies, T. cruzi cells (Y strain, DTU Tc II) treated for 2 days, with
each studied compound at concentrations corresponding to 2 × IC50 values (5 mL) were centrifuged at
1500× g for 10 min at 4 °C. The pellet was discarded, and the parasite-free supernatant was stored at
−20 °C until use. Before measuring, DMF (0.1 mL, 10 mM) as the internal standard and D2O (0.1 mL)
1
were added to the supernatant (0.3 mL). H-NMR experiments were recorded at 20 °C on a Bruker
Advance DPX-400 spectrometer (Bruker), operating at 400.132 MHz, with a 5 mm broadband inverse
geometry probe. The acquisition parameters included: 90° pulse (zgpr, advance-version v 1.7.10.2, 1D
sequence with f1 presaturation), 128 scans, and spectral width of 14.983 ppm. The acquisition time was
1.3664 s. Signal intensities were calculated by performing appropriate baseline corrections and then
integrating the area under each of the resonances using MestRe-C NMR software. Spectra were analyzed
using the Topspin 1.3 software package. The spectra were registered with water suppression in 5 mm
NMR (Aldrich, St. Louis, MO, USA) sample tubes. The chemical displacements used to identify the
respective metabolites were previously confirmed by adding each analyzed metabolite to the studied
supernatant, as well as by the study of a control solution with 4 μg/mL of each metabolite in buffer
(phosphate, pH = 7.4). Each run was done at least in triplicate and the Student t test was used to analyze
the significance of the changes. The chemical shifts (δ, ppm) and multiplicity of the analyzed catabolites
were: Ala (alanine), 1.316, d; Lac (lactate), 1.466, d; Ace (acetate), 1.904, s; Pyr (pyruvate), 2.357, s; Succ
(succinate), 2.392, s; Gly (glycine), 3.547, s [31].

Molecules 2015, 20
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4. Conclusions
We have identified four derivatives, 2, 13, 14, and 15, with good anti-T. cruzi activity and selectivity
profiles with different kinds of effects on the biochemical pathways of the parasite (Figure 5).
S
S
O
Me
O
O
Me
- IC50, cruzipain = 15.5 μM
- squalene accumulation in the parasite
- depletion of Gly and Pyr elimination
S
IC50, epi = 7.7 μM
2
SI = 3.1
O
Me
S
S
O
HO
IC50, epi = 5.5 μM
Ph
- IC50, TcTIM = 3.35 μM
SI = 6.2
S
13
O
Ph
S
S
O
HO
S
IC50, epi = 4.9 μM
-
14
15
SI = 12.8
O
S
S
O
MeO
Me
IC50, epi = 5.9 μM
S
- IC50, cruzipain = 15.1 μM
SI < 4.1
O
Me
Figure 5. Summary of the identified 3-(alkylthio)propylidene-3H-[1,2]dithiole derivatives
as the best anti-T. cruzi agents.
Specifically, 3-(alkylthio)propylidene-3H-[1,2]dithiole 2 could be considered as a multitarget
anti-T. cruzi agent showing modest TcTIM and cruzipain inhibitions, at the micromolar level, and effects
on the membrane sterol biosynthesis and on some mitochondrial enzymes. The dithiole 2 could be
classified as a symbiotic agent [32].
On the other hand, we identified new hits, for further structural modifications, 3H-[1,2]dithiole-3-
thiones, 3-(alkylthio) propylidene-3H-[1,2]dithioles, and [1,2]dithiolium iodide, as pharmacophores for
TcTIM and cruzipain inhibitors.
Further studies are needed in order to optimize the chemical structure and propose these systems as
scaffolds for drugs against Chagas disease.

Molecules 2015, 20
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Acknowledgments
The authors would like to thank the Comisión Sectorial de Investigación Científica (CSIC)-UdelaR
(grants CSIC-N° 210, CSIC-N° 155, and CSIC-PAIE N° 112) of Uruguay and CONACYT (grant N°
167823) of México. Collaborative work was performed under the auspices of the Iberoamerican Program
for Science and Technology (CYTED), network RIDIMEDCHAG. JV, and MaCo thank ANII
(Uruguay) for their scholarships.
Author Contributions
M.T.G.-P., A.G.-P., R.P.-M., H.C. and M.G. designed research and experiments; Ma.Co. C.S., B.D.,
V.M., J.V., G.A., M.C., L.C., B.A.-L., and N.C. performed research; M.G. and H.C. analyzed the data;
R.P.-M., M.G. and H.C. wrote the paper. All authors read and approved the final manuscript.
Conflicts of Interest
The authors declare no conflict of interest.
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Sample Availability: Samples of the studied compounds are available from the authors.
© 2015 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article
distributed under the terms and conditions of the Creative Commons Attribution license
(http://creativecommons.org/licenses/by/4.0/).