SUPRAMOLECULAR CHEMISTRY
3
3
-parameter exchange functional together with the Lee-
Yang-Parr correlation functional (B3LYP) (30, 31) [B3LYP/
-31+G(d,p)/LANL2DZ] were used in calculation of DFT
complex.
The 6-31+G(d,p) were optimized for the C, H, N and
obtained they were treated with Pb(NO ) in serum free
3 2
media for 1 hour, then fluorescent ligand CAAQ was
added and cells were rested for 15 minutes in dark.
Slides were prepared and observed under 40× objective
of fluorescent microscope.
6
was used for the lead metal ion (29, 32, 33). The ligand
Avogadro version 1.2.0 software (34). Gas phase geo-
metry optimizations were carried out without symmetry
constraint using the Gaussian 09W software (35).
2
.5. Synthesis of CAAQ
2.5.1. Synthesis of 3-(2-(5-methyl-1H-pyrrol-2-yl)
propane-2-yl) phenol (MHCP)
2.5.1.1. Conventional method. Parent 3-methoxy-
substituted calix[4]pyrrole skeleton was synthesized using
general method of acid catalysed condensation reaction of
pyrrole and aromatic ketone.5.36 ml (0.08 mole) Pyrrole was
placed in a 250 ml round bottom flask equipped with
magnetic stirrer and filled with methanol (100 ml).
Methane sulfonic acid (1 ml) was then added to the reaction
flask and stirred for 15 minutes.3-hydroxy acetophenone
(11 gm, 0.08 mole) was dissolved in methanol (50 ml) and
added stepwise to the reaction flask. Reaction mixture was
left to stir for 7 hrs and was monitored by TLC using
petroleum ether: ethyl acetate (9.5:0.5) as the developing
solvent. After completion of reaction, the reaction mixture
was then poured slowly into another 500 ml round bottom
flask equipped with a magnetic stirrer and distilled water
(200 ml) containing triethyl amine to obtain a brown
colored residue (20). It was filtered, collected and dissolved
in diethyl ether (400 ml) to get rid of the black tar. The
solvent was evaporated to obtain deep brown-black resi-
due, which was then recrystallized from methanol to obtain
pure product (58%) (1). Melting point 200 C. Elemental
analysis found: C 77.81, H 5 .99, N 7.56, O 8.64
2
.4.4. Molecular dynamics (MD) simulation
Desmond program version 2.0 (academic version) was
administered for the molecular dynamics (MD) simula-
obtained via Hex software (32, 33). The system has been
prepared via cubic periodic box containing dimethyl
sulfonyl oxide (DMSO)(10Å × 10Å × 10Å) with
Optimized Potentials for Liquid Simulations (OPLS) in
all-atom force field 2005 (34) followed with addition of
−
counter ions (Na+ and Cl ) for the neutralization pro-
cess. 247 atoms from inclusion complex and 2004
DMSO molecules were provided for the energy minimi-
zation and pre-equilibration in various restrained steps.
10 ns with relaxation time has been chosen for the
molecular dynamics (MD) simulation experiment in
which various parameters have been optimized and
considered as per the standard protocol relaxation
time of 1 ps at constant temperature of 300 K, constant
volume and shape ensemble (NVT) with Nose-Hoover
−
9
−1
35) (with a 10 tolerance limit), cut-off distance of 9.0
C48H44N4O4 FT-IR(KBr)cm : 3402(pyrrolicNH),3271 and
A (35), and 2084 frames were generated during 10 ns in
the trajectory and captured every 4.8 ps time step for
further analysis.
3109 (b-pyrroleC–H and -OH),1681,1566,1496,1334 and
13
1296. C-NMR (125MHz,d6-DMSO)ppm: 157.61, 151.07,
1
137.44, 115.02, 105.02,66.99,39.59. H NMR (500 MHz,
To decipher the stability an average structure was
selected from the molecular dynamics (MD) simulation
residing to production phase. In addition, root mean
square deviation (RMSD), root mean square fluctuation
DMSO)ppm δ 10.00–9.45 (s, 4H), 9.18 (s, J = 66.5, 25.5 Hz,
4H), 6.85 (dd, J = 24.8, 8.7 Hz, 3H), 6.71 (dd, J = 22.1, 8.3 Hz,
6H), 6.61 (dd, J = 17.1, 8.3 Hz, 7H), 5.96 (dd, 2H), 5.81 (dd, 2H),
5.41 (dd, 2H), 5.31 (dd, 2H), 1.77 (s, 12H). CHCl3 (dd, 7.40),
DMSO (s, 3.37).mass spectrometry m/z % (ESI-MS) 741
[M + 1].
(RMSF), hydrogen bond and radius of gyration (Rg)
evaluation have been performed to investigate the
structural changes and dynamic behaviour of the
complex.
2.5.1.2. Microwave irradiation method. A mixture of
pyrrole 1 (1.0 ml, 0.015 mole) and methane sulfonic acid
(0.1 ml) in methanol (10 ml) were exposed to micro-
wave irradiation for 10 min. A solution of 3-hydroxya-
cetophenone (2.0 gm, 0.015 mole) in methanol (10 ml)
was then added to the reaction mixture and was sub-
jected to microwave irradiation for 10 min with a slight
pause after every 2 minutes. After completion of the
reaction, a deep brown-black reaction mixture was
poured into cold water (50 ml) to obtain brown black
2
.4.5. Cell culture and fluorescence imaging of cells
Lymphocytes were cultured in RPMI1640 medium sup-
plemented with 7% fetal bovine serum (FBS), antibiotics
(100mg Penicillin and 100mg Streptomycin) and 100µl
of PHA to stimulate the cell growth, at 37°C in an
incubator. Cells were proliferated and harvested at
7
0th hour with the help of chilled fixative (1:3 acetic
acid: methanol). Once the pellets of lymphocytes were