cycloSal-NMP of ddA and d4A
J ournal of Medicinal Chemistry, 1999, Vol. 42, No. 9 1611
gradients), high-field multinuclear NMR spectroscopy, and
electrospray mass spectrometry.
NH2); 7.21-7.16 (m, 2H, H-aryl); 7.07-7.00 (m, 4H, H-aryl);
6.26-6.21 (m, 2H, H1′); 5.43 (dd, 1H, HA-benzyl); 5.36 (dd, 1H,
HA-benzyl); 5.33 (dd, 1H, HB-benzyl); 5.30 (dd, 1H, HB-benzyl);
4.39-4.19 (m, 6H, H4′, H5′); 2.50-2.42 (m, 4H, H2′); 2.18 (s,
3H, CH3); 2.12 (s, 3H, CH3), 2.20-2.06 (m, 4H, H3′); 13C NMR
(63 MHz, DMSO-d6) δ 155.98 (C6); 152.46 (C2); 148.86 (C4);
147.87, 147.77 (d, C2-aryl); 138.91, 138.82 (C8); 130.75 (C4-
aryl); 126.84, 126.72 (C3-aryl); 123.81 (C5-aryl); 123.40 (C6-
aryl); 120.90, 120.84 (d, C1-aryl); 119.07 (C5); 84.31, 84.21
(C1′); 78.60, 78.49 (C4′); 69.23, 69.14 (C5′); 68.38, 68.27 (d, CH2-
benzyl); 30.71, 30.63 (C3′); 25.81, 25.73 (C2′); 14.81, 14.72
(CH3-C3-aryl); 31P NMR (162 MHz, DMSO-d6) δ -9.11; -9.21;
(ESI+) m/z 418.1; UV (CH3CN) λmax 259.87 nm, 195.98 nm; λmin
230.58 nm; IR (KBr) ν 3332.2, 3179.0, 2955.2, 1647.9, 1598.4,
1575.7, 1473.8, 1415.1, 1367.9, 1296.7, 1190.2, 1090.6, 1017.3,
939.8, 883.3, 823.0, 774.5, 723.9, 696.8, 651.6, 532.7; Rf value
0.38 (CH2Cl2/MeOH, 9:1); analytical HPLC tR 16.15 min, 16.29
min (99.4%, gradient I); 12.09 min, 12.48 min (99.4%, gradient
II); 18.59 min, 18.77 min (99.4%, gradient III).
Gen er a l P r oced u r e for th e P r ep a r a tion of th e cy-
cloSal-ddAMP s 9, cycloSal-d4AMP s 10, 3-Meth yl-cycloSal-
d d IMP (11c), a n d 3-Meth yl-cycloSa l-d 4IMP (12c). The
reactions were performed in an argon atmosphere under
anhydrous conditions. To a solution of the nucleoside 1, 2, 3,
or 4 (0.20 mmol) in 2 mL of DMF and 1 mL of THF, cooled to
-40 °C, was added DIPEA (2.0 equiv, 0.40 mmol). Then the
chlorophosphanes 13a -d 28 (2.0 equiv, 0.4 mmol) were added
within 0.5 h, and the solutions were stirred for 20 min to
complete the reaction (TLC analysis). For the oxidation of the
intermediate cyclic phosphites, tert-butyl hydroperoxide (2.0
equiv, 0.4 mmol) was added to the reaction mixture at -40
°C. After stirring for 0.5 h, the reaction mixture was warmed
to room temperature, and the solvent was removed under
reduced pressure. The residues were purified twice by chro-
matography on silica gel plates on a chromatotron, first using
a gradient of CH3OH in ethyl acetate (0-30% methanol)
followed by a gradient of CH3OH in CH2Cl2 (0-20%), to yield
the title compounds 9-12.
cycloSa lige n yl-5′-O-(2′,3′-d id e oxya d e n osin yl)p h os-
p h a te (cycloSa l-d d AMP , 9a ): yield 47%; 1H NMR (400 MHz,
DMSO-d6) δ 8.31 (s, 1H, H8); 8.27 (s, 1H, H8); 8.19 (s, 1H,
H2); 8.18 (s, 1H, H2); 7.41 (t, 1H, H4-aryl); 7.37 (t, 1H, H4-
aryl); 7.31 (s, 2H, NH2); 7.30 (s, 2H, NH2); 7.27 (d, 1H, H5-
aryl); 7.26 (d, 1H, H5-aryl); 7.23 (d, 2H, H6-aryl); 7.16 (d, 1H,
H6-aryl); 7.08 (d, 1H, H6-aryl); 6.29 (dd, 1H, H1′); 6.28 (dd,
1H, H1′); 5.51 (dd, 1H, HA-benzyl); 5.45 (dd, 1H, HA-benzyl);
5.43 (dd, 1H, HB-benzyl); 5.39 (dd, 1H, HB-benzyl); 4.44-4.27
(m, 6H, H4′, H5′); 2.61-2.45 (m, 2H, H2′); 2.22-2.10 (m, 2H,
H3′); 13C NMR (63 MHz, DMSO-d6) δ 156.03 (C6); 152.53 (C2);
149.34, 149.29 (d, C2-aryl); 148.93 (C4); 138.98, 138.92 (C8);
129.68 (C6-aryl); 125.97 (C4-aryl); 124.34 (C5-aryl); 121.02,
120.86 (d, C1-aryl); 119.08 (C5); 118.18, 118.04 (C3-aryl); 84.35,
84.28 (C1′); 78.50, 78.46 (C4′); 69.15, 69.05 (C5′); 68.40, 68.30
(t, CH2-benzyl); 30.65 (C3′); 25.80 (C2′); 31P NMR (162 MHz,
DMSO-d6) δ -9.77; -9.83; (ESI+) m/z 404.1; UV (CH3CN) λmax
259.62.5 nm, 210.07 nm; λmin 230.24 nm, 203.10 nm; IR (KBr)
ν 3325.9, 3175.7, 2954.4, 1651.3, 1598.5, 1574.1, 1488.3,
1459.5, 1415.3, 1370.0, 1296.8, 1245.4, 1222.8, 1192.0, 1093.5,
1043.8, 1019.5, 991.1, 938.2, 881.4, 842.5, 799.5, 760.0, 724.2,
696.8, 652.8, 579.4, 533.5; Rf value 0.35 (CH2Cl2/MeOH, 9:1);
analytical HPLC tR 17.11 min (99.6%, gradient I); 13.51 min
(99.6%, gradient II); 19.49 min (99.5%, gradient III).
cyclo(3,5-Dim eth ylsa ligen yl)-5′-O-(2′,3′-d id eoxya d en os-
in yl)p h osp h a te (3,5-d iMe-cycloSa l-d d AMP , 9d ): yield 50%;
1H NMR (600 MHz, DMSO-d6) δ 8.22 (s, 1H, H2); 8.19 (s, 1H,
H2); 8.11 (s, 1H, H8); 8.10 (s, 1H, H8); 7.24 (s, 2H, NH2); 7.22
(s, 1H, NH2); 7.00 (s, 1H, H4-aryl); 6.96 (s, 1H, H4-aryl); 6.81
(s, 1H, H6-aryl); 6.78 (s, 1H, H6-aryl); 6.22 (dd, 1H, H1′); 6.20
(dd, 1H, H1′); 5.36 (dd, 1H, HA-benzyl); 5.29 (dd, 1H, HA-
benzyl); 5.28 (dd, 1H, HB-benzyl); 5.23 (dd, 1H, HB-benzyl);
4.34-4.15 (m, 6H, H4′, H5′); 2.48-2.43 (m, 2H, H2′); 2.20 (s,
6H, CH3-C5-aryl); 2.12 (s, 6H, CH3-C3-aryl); 2.13-2.08 (m,
4H, H3′); 13C NMR (150.9 MHz, DMSO-d6) δ 155.92 (C6);
152.41, 152.39 (C2); 148.82, 148.78 (C4); 145.67, 145.63 (d, C2-
aryl); 138.86, 138.78 (C8); 132.89, 132.85 (C5-aryl); 131.17,
131.15 (C6-aryl); 126.39, 126.34 (C4-aryl); 123.41, 123.39 (C3-
aryl); 120.37, 120.32 (d, C1-aryl); 119.00, 118.96 (C5); 84.22,
84.13 (C1′); 78.51, 78.46 (d, C4′); 69.04, 69.01 (C5′); 68.32, 68.20
(d, CH2-benzyl); 31P NMR (162 MHz, DMSO-d6) δ -9.076;
-9.18; (ESI+) m/z 432.4, 453.9 (M + Na+); UV (CH3CN) λmax
259.16 nm, 197.96 nm; λmin 231.02 nm; IR (KBr) ν 3329.3,
3185.7, 2927.7, 1647.0, 1600.3, 1573.1, 1483.4, 1415.4, 1363.7,
1331.2, 1299.7, 1245.1, 1202.1, 1150.0, 1096.8, 1045.8, 993.4,
931.9, 858.9, 799.1, 698.2, 665.4, 582.7, 487.9; Rf value 0.39
(CH2Cl2/MeOH, 9:1); analytical HPLC tR 117.95 min, 18.09 min
(98.8%, gradient I); 15.16 min, 15.40 min (98.8%, gradient II);
20.53 min, 20.69 min (98.9%, gradient III).
cycloSa ligen yl-5′-O-(2′,3′-d id eoxy-2′,3′-d id eh yd r oa d e-
1
n osin yl)p h osp h a te (cycloSa l-d 4AMP , 10a ): yield 54%; H
cyclo(5-Meth oxysa ligen yl)-5′-O-(2′,3′-d id eoxya d en osi-
n yl)p h osp h a te (5-OMe-cycloSa l-d d AMP , 9b): yield 67%; 1H
NMR (400 MHz, DMSO-d6) δ 8.33 (s, 1H, H8); 8.30 (s, 1H,
H8); 8.23 (s, 1H, H2); 8.21 (s, 1H, H2); 7.34 (s, 2H, NH2); 7.33
(s, 2H, NH2); 7.12 (d, 1H, H3-aryl); 7.04 (d, 1H, H3-aryl); 6.98
(dd, 1H, H4-aryl); 6.93 (dd, 1H, H4-aryl); 6.89 (d, 1H, H6-aryl);
6.87 (d, 1H, H6-aryl); 6.32 (m, 2H, H1′), 5.50 (dd, HA-benzyl);
5.43 (dd, HA-benzyl); 5.41 (dd, HB-benzyl); 5.37 (dd, HB-benzyl);
4.44-4.27 (m, 6H, H4′, H5′); 3.81 (s, 3H, OCH3); 3.41 (s, 3H,
OCH3); 2.61-2.49 (m, 4H, H2′); 2.27-2.11 (m, 4H, H2′); 13C
NMR (63 MHz, DMSO-d6) δ 156.02 (C6); 155.51 (C5-aryl);
152.55 (C2); 148.93 (C4); 142.92, 142.85 (d, C2-aryl); 138.94
(C8); 121.75, 121.71 (d, C1-aryl); 119.07 (C3-aryl); 118.98 (C5);
115.09, 115.00 (C6-aryl); 110.54, 110.46 (C4-aryl); 84.28 (C1′);
78.62, 78.52 (C4′); 69.13 (C5′), 68.37, 68.25 (d, CH2-benzyl);
55.55 (OCH3), 30.73 (C3′); 25.80 (C2′); 31P NMR (162 MHz,
DMSO-d6) δ -9.57; -9.63; (ESI+) m/z 434.1; UV (CH3CN) λmax
259.39 nm, 195.02 nm; λmin 236.18 nm; IR (KBr) ν 3331.2,
3177.6, 2954.0, 2837.9, 1647.7, 1598.7, 1575.3, 1497.9, 1472.9,
1431.2, 1364.5, 1297.8, 1244.1, 1198.4, 1159.9, 1094.0, 1024.7,
948.9, 914.9, 866.8, 798.9, 759.6, 726.8, 695.9, 650.0, 568.6,
524.3, 480.6; Rf value 0.36 (CH2Cl2/MeOH, 9:1); analytical
HPLC tR 16.53 min, 16.75 min (98.6%, gradient I); 12.33 min,
12.79 min (98.6%, gradient II); 19.01 min, 19.21 min (98.6%,
gradient III).
NMR (600 MHz, DMSO-d6) δ 8.141 (s, 1H, H2); 8.143 (s, 1H,
H2); 7.92 (s, 1H, H8); 7.93 (s, 1H, H8); 7.29 (s, 2H, NH2); 7.28
(s, 2H, NH2); 7.35 (t, 1H, H4-aryl); 7.27 (t, 1H, H4-aryl); 7.23
(dd, 1H, H6-aryl); 7.19 (dd, 1H, H6-aryl); 7.16 (dt, 1H, H5-
aryl); 7.15 (dt, 1H, H5-aryl); 7.11 (dd, 1H, H3-aryl); 6.97 (dd,
1H, H3-aryl); 6.94 (ddd, 1H, H1′); 6.92 (ddd, 1H, H1′); 6.48
(ddd, 1H, H3′) 6.43 (ddd, 1H, H3′); 6.25 (ddd, 1H, H2′); 6.22
(ddd, 1H, H2′); 5.46 (dd, 1H, HA-benzyl); 5.38 (dd, 1H, HA-
benzyl); 5.35 (dd, 1H, HB-benzyl); 5.32 (dd, 1H, HB-benzyl);
5.09-5.06 (m, 2H, H4′); 4.36-4.26 (m, 4H, H5′); 13C NMR
(150.9 MHz, DMSO-d6) δ 155.96 (C6); 152.64, 152.61 (C2);
149.28, 149.23 (d, C2-aryl); 149.13, 149.12 (C4); 138.51, 138.44
(C8); 132.16, 132.09 (C3′); 129.67, 129.58 (C6-aryl), 126.64
(C2′); 125.93 (C4-aryl); 124.34, 124.28 (C5-aryl); 120.99, 120.81
(d, C1-aryl); 118.76 (C5); 118.08, 118.03 (d, C3-aryl); 87.79,
87.77 (C1′); 84.85, 84.83 (d, C4′); 68.39, 68.22 (d, C5′); 68.29,
68.27 (d, CH2-benzyl); 31P NMR (162 MHz, DMSO-d6) δ -9.65;
-9.84; MS (ESI+) m/z 401.9, 423.9 (M + Na+); UV (CH3CN)
λmax 259.06 nm, 194.00 nm; λmin 228.10 nm; IR (KBr) ν 3333.0,
3182.9, 1650.0, 1598.9, 1488.5, 1418.2, 1371.0, 1293.1, 1242.7,
1193.3, 1093.7, 1021.0, 949.7, 846.2, 828.5, 761.3, 720.8, 650.3,
578.2; Rf value 0.35 (CH2Cl2/MeOH, 9:1); analytical HPLC tR
15.72 min (98.6%, gradient I); 9.43 min, 9.87 min (98.5%,
gradient II); 18.03 min (98.6%, gradient III).
cyclo(3-Meth ylsaligen yl)-5′-O-(2′,3′-dideoxyaden osin yl)-
p h osp h a te (3-Me-cycloSa l-d d AMP , 9c): yield 58%; 1H NMR
(400 MHz, DMSO-d6) δ 8.24 (s, 1H, H8); 8.21 (s, 1H, H8); 8.14
(s, 1H, H2); 8.13 (s, 1H, H2); 7.27 (s, 2H, NH2); 7.26 (s, 2H,
cyclo(5-Meth oxysa ligen yl)-5′-O-(2′,3′-d id eoxy-2′,3′-d id e-
h yd r oa d en osin yl)p h osp h a t e (5-OMe-cycloSa l-d 4AMP ,
10b): yield 50%; 1H NMR fast diastereoisomer (600 MHz,
DMSO-d6) δ 8.16 (s, 1H, H2); 7.97 (s, 1H, H8); 7.30 (s, 2H,