Fluorescent and Electrochemical Sensing of Polyphosphate Nucleotides
FULL PAPER
changes in both electrochemical behaviour of the Fc/Fc+
centre (ꢄ0.1 V), due to major disruption in the structure,
and off–on fluorescence enhancement of pyrene excimer
emission induced by p···p stacking of the two aromatic py-
and acetone, and then dried with lint-free tissue paper. The solutions
used for voltammetric measurement were purged with solvent-saturated
nitrogen gas before each experiment and were blanketed with nitrogen
gas during the experiment.
Synthesis
ACHTUNGTRENNUNGrenes.
1-Pyrenecarboxaldehyde: Pyrene (2.1 g, 10 mmol) was added to a mixture
of POCl3 and N-methylformanilide at room temperature. The solution
was heated to 1008C under an atmosphere of nitrogen for 6 h. A yellow
precipitate was obtained after the reaction mixture was poured into an
ice-water mixture. The precipitate was collected through vacuum filtra-
tion. The solid was recrystallised from methanol to give yellow needles of
1-pyrenecarboxaldehyde. Yield: 1.5 g (70%); 1H NMR (400 MHz,
CDCl3): d=7.92–8.34 (m, 9H), 10.2 ppm (s, 1H); ESIMS: m/z: 231.1
[M++H].
Experimental Section
Materials: Unless otherwise specified, reagents and chemicals were pur-
chased from commercial sources and were used without further purifica-
tion. In the synthetic work, the solvents were used as received or dried
over 4 ꢂ molecular sieves. Deionised water was distilled prior to use. Tet-
rabutylammonium hexafluorophosphate (Bu4NPF6, Fluka) was recrystal-
lised from ethanol prior to use as the electrolyte in electrochemical stud-
ies. Tris-HCl buffer solutions (pH 7.4; 10.0 and 50.0 mm) were prepared
by dissolving tris(hydroxymethyl)aminomethane (Tris base) in distilled
water (500 mL) followed by titration to pH 7.4 with HCl (1.0m) solution,
measured by using a pH meter (HANNA instrument pH 211) at (20ꢁ
1)8C, and adjustment of the total solution volume to 1000 mL in a volu-
metric flask. 31P NMR titration experiments were carried out in Tris-HCl
D2O buffer solution (10.0 mm, pD=7.6, (20ꢁ1)8C), in which the pD
value was determined to pH meter value plus 0.4. The HEPES buffer so-
lution (pH 7.4; 50.0 mm) was prepared by dissolution of HEPES in dis-
tilled water (500 mL) and titrated to pH 7.4, by using NaOH (0.1m) solu-
tion at (20ꢁ1)8C, and then diluted with distilled water to 1000 mL in a
volumetric flask.
Instrumentation and methods: 1H NMR and 13C NMR spectra were re-
corded in deuterated solvents by using an Avance DRX400 Bruker spec-
trometer at 308C. The chemical shifts are reported in ppm (parts per mil-
lion). Tetramethylsilane (TMS) or the residual solvent peaks have been
used as an internal reference. The abbreviations for the peak multiplici-
ties are as follows: s (singlet), d (doublet), dd (doublet of doublets),
t (triplet), q (quartet), m (multiplet) and br (broad). Infrared spectra
were recorded a Perkin–Elmer 1600 series FTIR spectrophotometer at
4 cmꢀ1 resolution on samples doped in KBr pellets. CHN analyses were
performed by the Campbell Microanalytical Services, University of
Otago, Dunedin (New Zealand). Low-resolution electrospray mass spec-
tra were recorded with a Micromass Platform II Quadrupole mass spec-
trometer fitted with an electrospray source. Samples were introduced by
a syringe pump at a rate of 1 Lminꢀ1 and the capillary voltage was at
200 V. Thin layer chromatography (TLC) was performed by using silica
gel 60 F-254 (Merck) plates and basic alumina followed by preparative
column chromatography on silica gel and alumina. Fluorescence titration
experiments were carried out in Tris-HCl buffer solution (10.0 mm,
pH 7.4, (20ꢁ1)8C). Fluorescence spectra were recorded with a Varian
Cary Eclipse fluorescence spectrophotometer, with excitation and emis-
sion slit widths of 2.5 mm.
1-Pyrenemethanol: 1-pyrenecarboxaldehyde (1.15 g, 5.0 mmol) was dis-
solved in THF (30 mL) and a solution of NaBH4 (210 mg, 5.5 mmol) dis-
solved in methanol (10 mL) was added dropwise into the 1-pyrenecar-
boxaldehyde solution at room temperature. After stirring overnight, a
few drops of acetic acid were added to the reaction mixture to quench
the excess NaBH4. After the organic solvent was removed on a rotary
evaporator, the solid was extracted into chloroform twice and washed
twice with an aqueous solution. The collected organic solution was dried
with sodium sulfate and was concentrated to give yellow solid 1-pyrene-
methanol. Yield: 1.0 g (90%); 1H NMR (400 MHz, CDCl3): d=5.07 (s,
2H), 7.75–8.14 ppm (m, 9H); ESIMS: m/z: 233.2 [M++H].
Compound 1: Dicyclohexylcarbodiimide (460 mg, 2.2 mmol) and a cata-
lytic amount of 4-dimethylaminopyridine were added to a solution pre-
pared by dissolving 1-pyrenemethanol (464 mg, 2.0 mmol) and 4-bromo-
butyric acid (335 mg, 2.0 mmol) in CH2Cl2 (20 mL), and the mixture was
stirred overnight at room temperature. The mixture was filtered and the
solvent was removed from the filtrate to yield a yellow oil, which was pu-
rified by silica-gel column chromatography by using ethyl acetate and
hexane (1:2) as the eluent to afford a yellow solid 1. Yield: 565 mg
1
(75%); H NMR (400 MHz, CDCl3): d=2.15–2.36 (m, 4H), 3.49 (t, 2H),
5.68ACHTNUGRTNEUNG
(s, 2H), 7.72–8.16 ppm (m, 9H); ESIMS: m/z: 383.2, 381.2 [M++H].
Compound 2: Tacnorthoamide[15] (700 mg, 5.0 mmol) was dissolved in
THF (3 mL) and a solution of bromoethane (600 mg, 5.5 mmol) in THF
(3 mL) was added to this solution over a 10 min period. The mixture was
then stirred overnight and the precipitate that resulted was collected by
filtration and washed several times with THF. The precipitate was dis-
solved in water (20 mL) and the aqueous solution was heated at reflux
for 4 h. After the solution was cooled to room temperature, NaOH solu-
tion (10m) was carefully added dropwise to the reaction solution to
adjust the pH to 12. The product was extracted with CHCl3 (3ꢀ30 mL).
Removal of the organic solvent on a rotary evaporator gave a colourless
oil. Yield: 625 mg (67%); 1H NMR (400 MHz, CDCl3): d=2.15–2.36 (m,
4H), 3.49 (t, 2H), 5.68ACTHNUTRGNEUGN(s, 2H), 7.72–8.16 ppm (m, 9H); ESIMS: m/z:
771.2 [M++H].
Compound 3: 1,1’-bis(dichloromethyl)ferrocene (270 mg, 1.0 mmol),
which was obtained by a literature method,[16] and 2 (405 mg, 2.2 mmol)
were dissolved in acetonitrile (40 mL), and potassium carbonate (550 mg,
4 mmol) was added. The mixture was stirred for 1 hour at room tempera-
ture and was then heated to 808C overnight. The mixture was filtered
and the solvent removed from the filtrate in vacuo to yield a solid residue
which was dissolved in chloroform and was extracted twice with distilled
water. After removing the organic solvent, the crude product was isolated
as a brown crude solid. Further purification was carried out by chroma-
tography on a silica-column with MeOH/CH2Cl2 in a 1:22 ratio as the
eluent. The product was collected as a pure yellow oil after the solvent
was removed on a rotary evaporator. Yield: 290 mg (50%); 1H NMR
(400 MHz, CDCl3): d=1.28 (t, J=7.8 Hz, 6H), 2.39–2.46 (m, 4H), 2.55–
2.64 (m, 8H), 2.80–2.88 (m, 4H), 3.00–3.06 (m, 8H), 3.30–3.38 (m, 4H),
3.45 (s, 4H), 4.05–4.12 (m, 8H), 8.02 ppm (d, 2H); 13C NMR (100 MHz,
CDCl3): d=12.5, 47.2, 48.2, 51.7, 52.1, 52,8 53.6, 58.3, 68.3, 70.4, 84.4,
164.6 ppm; ESIMS: m/z: 291.2 [M++2H]/2, 581.2 [M++H].
Electrochemical Studies: Electrochemical experiments were carried out
at (20ꢁ1)8C in a standard three-electrode cell arrangement with a BAS
100B electrochemical workstation (Bioanalytical Systems, West Lafay-
ette, IN, USA). A platinum wire auxiliary electrode, and an aqueous Ag/
AgCl (NaCl, 3m) reference electrode were used for studies in the mixed
solvent CH3CN/Tris-HCl (50.0 mm; 1:9) and CH3CN/HEPES (50.0 mm;
1:9) buffer solutions (pH 7.4). A glassy carbon (GC) working electrode
with a diameter of 1.0 mm and an area of 0.72 mm2 was used for the
cyclic voltammetric experiments. Rotating-disc experiments employed a
GC working electrode (3.0 mm diameter, 7.10 mm2 effective area) and
were performed with a BAS RDE-2 accessory. The area or radii of the
voltammetric working electrodes was determined from cyclic voltammo-
grams by using the peak current from the oxidation of a 1.0 mm Fc solu-
tion (diffusion coefficient of 2.3ꢀ10ꢀ5 cm2 sꢀ1
) in CH3CN (Bu4NPF6,
0.1m) and with the application of the Randles–Sevcik equation. The area
of the rotating-disc electrode was similarly determined by using the
Levich equation. Prior to each voltammetric experiment, the working
Compound 4: Compound 3 (290 mg, 0.5 mmol) was dissolved in metha-
nol (5 mL) and sodium hydroxide solution (20 mL, 5m) was added. The
mixture was heated to reflux overnight, cooled to room temperature and
electrode was polished with 0.3 mm alumiACTHUNGTRENNnUNG a (Buehler, Lake Bluff, IL) on
a clean polishing cloth (Buehler), sequentially rinsed with distilled water
Chem. Eur. J. 2010, 16, 9154 – 9163
ꢁ 2010 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
9161