ORIGINAL ARTICLES
Western Blot. The capillary electrophoresis based assay was used for testing the
as emodin, also the binding mode was illustrated by a molecular
modeling approach.
inhibitors of the human CK2 as described earlier, 2 μL of the dissolved inhibitors
(stock solution concertation: 10 μM in DMSO) were mixed with 78 μL of CK2
supplemented kinase buffer which was composed of 1 μg CK2 holoenzyme, 50 mM
Tris/HCl (pH 7.5), 100 mM NaCl, 10 mM MgCl2 and 1 mM DTT. The reaction was
initiated by the addition of 120 μL assay buffer, which contains 25 mM Tris/HCl
(pH 8.5), 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 100 μM ATP and 190 μM of the
substrate peptide RRRDDDSDDD. The reaction was carried out for 15 min at 37 °C
and stopped by the addition of 4 μL EDTA (0.5 M). Subsequently the reaction mixture
was analyzed by a PA800 capillary electrophoresis from Beckman Coulter (Krefeld,
Germany). Acetic acid (2 M, adjusted with conc. HCl to a pH of 2.0) was used as the
electrolyte for electrophoretic separation. The separated substrate and product peptide
were detected at 214 nm using a DAD-detector. IC50 values were calculated from the
resulting dose–response curves.
3. Experimental
3.1. Synthesis
Starting materials, solvents, and reagents were purchased from commercial sources
and were used without further purification. The reactions were monitored by TLC on
silica-gel plates (Merck 60F254). Melting point was determined using electro thermal
apparatus 9100, and used without calibration. IR spectra were recorded on KBr on
Jasco FT/IR-4200 apparatus. UV spectra were recorded using Shimadzu UV-BC
3101. 1H NMR and 13C NMR spectra were recorded on a Bruker Ultra Shield 400
instrument (400 MHz for 1H, 100 MHz for 13C). Elemental analyses were performed
on EURO-EA instrument. CK2 activity was analyzed by a PA800 capillary electro-
phoresis from Beckman Coulter (Krefeld, Germany).
3.2.2. Cell viability assay
The effect of CK2 inhibitors on the viability of MCF-7 cells was evaluated using
MTT assay (Mosmann 1983). MCF-7 breast cancer cells (kindly provided by the
Department of Clinical Radiology of the University Hospital Muenster, Germany),
were cultured in RPMI 1640 medium containing GlutaMax (Life Technologies) and
10% fetal calf serum. MTT assay was performed in 96-well plates. Cells were seeded
at a density of 1 x 105 cells per well. Cells were incubated for 24 or 48 h at 37 °C in
a humidified atmosphere (5% CO2). After overnight incubation, seeding medium was
removed and replaced with fresh medium containing the inhibitor at 20 or 100 μM.
DMSO, at a final concentration of 1%, served as a control. Afterwards MTT reagent
(Sigma Aldrich, Germany) was added at a final concentration of 0.5 mg/mL. After
incubation for 2 h at 37 °C medium was discarded and 200 μL DMSO were added for
solubilization the formazan. After mixing, the absorption was determined at 570 nm
with a reference wavelength of 630 nm using a microplate reader. CK2 inhibitors were
assayed in triplicates, and the experiments were repeated three times.
3.1.1. General procedure for the preparation of the flavylium salts
In 25 ml round bottom flask, a mixture of 1 mM of 2`-Hydroxyacetophenone, 2 mM
mole of the aromatic aldehyde, and 1.4 ml triethyl orthoformate was prepared. Then,
0.1 ml of perchloric acid 70% was added drop wise, and the mixture was stirred at
room temperature for 3 h. The precipitate was removed by filtration, washed with dry
ether then recrystallized using glacial acetic acid to gain the corresponding flavylium
salt.
3.1.2. General procedure for the hydrolysis of the flavylium salts
The pure flavylium salt was refluxed with 25 ml of distilled water for 5-10 min, the
precipitated flavonoid was removed by filtration, recrystallized using ethanol.
3.1.3. Characterization of compound
3.3. Statistical analysis
4-Ethoxy-2-(4-hydroxyphenyl) chromenium perchlorate (1):
Prism 6 (GraphPad Software) was used to evaluate the IC50 values and their statistical
significance with Student’s t test. Values were considered statistically significant at
p below 0.05.
Orange powder. Yield 63.8 %, mp 254-256 ºC, IR (ν cm-1): 3438, 3079, 1103, 1598,
1
1531, 1618. H NMR (CD3OD, 400 MHz, 298K) δ/ppm: 10.350 (s, 1H, OH), 8.51-
8.44 (m, 2H, H2’, H6’), 8.36-8.33 (m, 1H, Ar-H), 8.22-8.10 (m, 2H, Ar-H), 8.03 (s, 1H,
H3), 7.83 (ddd, J = 8.19, 6.24, 1.96 Hz, 1H, Ar-H), 7.20-6.99 (m, 2H, H3’, H5’), 3.59
(q, J = 7.06, 7.06, 7.05 Hz, 2H, CH2), 1.16 (t, J = 7.04, 7.04 Hz, 3H, CH3). 13C NMR
(CD3OD, 100 MHz, 298K) δ/ppm: 134.239, 132.726, 128.695 (C2’, C6’), 125.459,
125, 124.354, 122.570, 120.469, 118.311, 117.13, 116.019 (C3’, C5’), 98.038 (C4),
70.501 (C3), 66.310 (CH2), 13.416 (CH3).
3.4. Computational study
Computational work was performed on Intel (R) Core (TM) processor 3.20 GHz,
using Molecular Operating Environment software package (MOE, Chemical
Computing Group, Montreal, Canada) (Molecular Operating Environment (MOE)).
2-(4-Hydroxyphenyl)chromen-4-one (2):
Pale yellow solid. Yield: 75.84 %, mp 274-276 ºC (Lit.: 270-273 ºC) (Kshatriya et al.
2014), UVλmax (methanol, nm): 219.5, 253, 326. IR (ν, cm-1): 3434.6, 3200, 1633.41,
1
3.4.1. Protein preparation
1600, 1565.92, 1456.9. H NMR (DMSO-d6, 400 MHz, 298K) δ/ppm: δ 10.340 (S,
1H, OH), δ 8.031 (dd, J = 7.94, 1.48 Hz, 1H, H5), δ 8.00-7.94 (m, 2H, H2’, H6’), δ 7.814
(ddd, J = 8.58, 6.99, 1.69 Hz, 1H, H7), δ7.753 (dd, J = 8.52, 0.92 Hz, 1H, H8), δ 7.482
(ddd, J = 8.02, 6.99, 1.20 Hz ,1H, H6), δ 7.00-6.90 (m, 2H, H5’, H3’), δ 6.88 (S, 1H, H3).
13C NMR (DMSO-d6, 100 MHz, 298K) δ/ppm: 177.283 (C4), 163.540 (C2), 161.267
(C4’), 155.806 (C10), 134.588 (C7), 129.127 (C2’, C6’), 125.793 (C6), 125.199 (C5),
123.787 (C9), 122.047 (C1’), 118.837 (C8), 116.419 (C3’, C5’), 105.280 (C3). Elemental
analysis: calcd: C, 75.623%, H, 4.22%, found: C 75.99%, H 3.85%.
Three dimensional 3D structure of the CK2 complex with apigenin was obtained from
the Protein Data Bank (PDB) using PDB ID: (4DGM) having a resolution of 1.65 Å.
The structure was optimized by using QuickPrep function implemented in the soft-
ware. Then water molecules were removed from the structure and 3D protonation was
done to change the state into ionization level. In the second step, energy minimization
was performed using defaults parameters, where the force field was Amber 99.
4-Ethoxy-2-(4-hydroxynaphthalen-1-yl) chromenium perchlorate (3):
º
Dark brown powder. Yield: 91.7 %, mp 233-235 C, IR (ν, cm-1): 3427, 1114, 1619,
3.4.2. Docking study
1535, 1597. 1H NMR (CD3CN, 400 MHz, 298K) δ/ppm: 9.17 (s, 1H, OH), 8.55 (m,
1H, Ar-H), 8.45-8.34 (m, 2H,Ar-H), 8.27 (d, J= 8.33, 1H, H2’), 8.19 (ddd, J= 8.71,
7.13, 1.58 Hz, 1H, Ar-H), 8.09 (m, 1H, Ar-H),7.87 (ddd, J = 8.17, 7.19, 1.07 Hz, 1H,
Ar-H), 7.81 (ddd, J= 8.54, 6.88, 1.42 Hz, 1H, Ar-H), 7.77 (s, 1H, H3), 7.71-7.66 (m,
1H, Ar-H), 7.17 (d, J= 8.33 Hz, 1H, H3’), 4.83 (q, J= 7.03, 7.03, 7.03 Hz, 2H, CH2),
1.67 (t, J= 7.02, 7.02 Hz, 3H, CH3). 13C NMR (CD3CN, 100 MHz, 298K) δ/ppm:
206.9, 177.337, 174.422, 160.843, 156.662, 138.036, 136.176, 131.837, 130.274,
129.056, 126.768, 124.95,124.479, 124.305, 123.432, 119.161, 118.783, 108.725,
102.519, 70.612(CH2), 13.328(CH3). Elemental analysis: calcd: C, 60.5%, H, 4.08%,
found: C, 60.1%, H, 3.65%.
The docking of the selected compounds from the database (compounds) into the
active site of CK2 enzyme (4DGM) was achieved using MOE-Dock implemented
on MOE. The docking parameters were set as Rescoring 1: London dG, Placement:
triangle matcher, Retain 30, Refinement Force field, and Rescoring 2: GBVI/WSA
dG. Docking part of MOE can give correct conformation of the ligand to obtain
minimum energy structure. The top conformation for each compound was selected
based on the S score and visual inspection was carried out by Lgplot implemented
in MOE. Compounds showing significant interaction with the residues of binding
pocket of CK2 were picked as promising hits. Prior to dock, the initial ligand from the
complex structure was extracted. For the scoring function, lower scores indicate more
favorable poses. The unit for the scoring function is Kal/mol, and the S score refers to
the final score, which is the score of the last stage that was not set to None. The Lig X
function in MOE was used for conducting interactive ligand modification and energy
minimization in the active site of the receptor.
2 (4`-Hydroxynaphthyl) chromen-4-one (4):
º
Golden brown crystals. Yield: 81.25 %, mp 240-241 C, UV λ
(methanol, nm):
max
214.5, 234, 308, 348. IR (ν, cm1): 3434.6, 3123, 1617.02, 1508.06, 1476.02, 1559.17.
1H NMR (DMSO-d6, 400 MHz, 298K) δ/ppm: 10.98 (s, 1H, OH), 8.28 (dd, J = 8.29,
0.99 Hz ,1H, H5), 8.11 (m, 2H, H5’, H8’), 7.84 (ddd, J = 8.70, 7.15, 1.73 Hz, 1H, H7),
7.75 (d, J = 7.95 Hz ,1H, H2’), 7.69 (dd, 1H, H8), 7.62 (ddd, J = 8.45, 6.81, 1.54 Hz,
1H, H6), 7.55 (dddd, J = 8.98, 8.05, 7.06, 1.18 Hz, 2H, H6’, H7’), 7.01 (d, J = 7.97 Hz
,1H, H3’), 6.59 (s, 1H, H3). 13C NMR (DMSO-d6, 100 MHz, 298K) δ/ppm: 177.403
(C4), 166.187 (C2), 156.855 (C4’), 156.592 (C10), 134.715 (C7), 131.8 (C9’), 130.448
(C2’), 128.371 (C6), 125.996 (C7’), 125.777 (C6’), 125.369 (C8’), 125.0 (C10’), 124.990
(C5’), 123.846 (C9), 123.176 (C5), 120.961 (C1’), 119 (C8), 111.830 (C3), 107.969 (C3’).
Elemental analysis: calcd: C, 79.1%, H, 4.1%, found: C, 78.679%, H, 3.714%.
Acknowledgements: Many thanks to M. Ktaifani, for his help and support.
Conflicts of interest: None declared.
References
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3.2. Biological evaluation
3.2.1. Inhibition of human CK2 holoenzyme
Cabrera M, Cabrera M, Simoens M, Falchi G, Lavaggi ML, Piro OE, Castellano EE,
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The preparation of the human recombinant CK2 holoenzyme was performed
according to a protocol previously described (Gratz et al. 2010). For the expres-
sion of the α-subunit (CSNK2A1) and β-subunit (CSNK2B) of the human protein
kinase CK2, the pT7-7 expression system in Escherichia coli BL21 (DE3) was used.
Fractions exhibiting CK2 activity were combined and analyzed by SDS-PAGE and
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