2
510 J ournal of Medicinal Chemistry, 2002, Vol. 45, No. 12
Hedenstr o¨ m et al.
to 10% above the determined distance. Methyl, methylene, and
aromatic ring protons with degenerate shifts were treated as
pseudoatoms. Upper distance limits for distance restraints
involving these pseudoatoms were increased by 1.0, 0.9, and
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(
6
0
1
.2 Å, respectively.
NOESY peak picking and cross-peak volume integration for
4
were performed in XWINNMR. J NHR was measured from the
line widths in the NOESY spectrum according to the method
6
1
of Wang et al.
J Râ was determined by simulating the observed
6
2
COSY cross-peaks with the programs SPHINX and LINSHA.
Coupling constants were converted into dihedral angles using
3
the Karplus equation. Those values for J Râ that were compat-
ible with the NOEs were chosen as dihedral angle restraints
for the structure calculations. Peak picking and ROESY cross-
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6
3
peak integrations for 8 were performed in FELIX, which was
3
3
(16) Hruby, V. J .; Lebl, M. I. Conformational properties of neurohy-
pophyseal hormone analogues in solution as determined by NMR
and laser Raman spectroscopies. In CRC Handbook of Neuro-
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Kojro, E.; Pavo, I.; Fahrenholz, F. Conformation of [8-arginine]-
vasopressin and V1 antagonists in dimethyl sulfoxide solution
derived from two-dimensional NMR spectroscopy and molecular
dynamics simulation. Eur. J . Biochem. 1991, 201, 355-371.
also used to extract J HNR. Because of spectral overlap, no J Râ
was estimated.
Three-dimensional starting structures were determined
4
1
from NMR data with the program X-PLOR. Structures
generated within X-PLOR were subjected to simulated an-
nealing using an ab initio simulated annealing protocol
4
2,43
followed by simulated annealing refinement.
Two starting
structures with different conformations were used to sample
more of the conformational space. The initial temperature in
the annealing protocol was set to 1000 K, and the final
temperature was 100 K. All structures were minimized with
a 200 step Powell minimization after refinment. A soft square-
(
18) Shenderovich, M. D.; Kasprzykowski, F.; Liwo, A.; Sekacis, I.;
Saulitis, J .; Nikiforovich, G. V. Conformational analysis of [Cpp1,
1
Sar7, Arg8]vasopressin by H NMR spectroscopy and molecular
mechanics calculations. Int. J . Pept. Protein Res. 1991, 38, 528-
welled potential with a force constant of 50 kcal mol-
1
Å
-2
was
538.
(
19) Zieger, G.; Andreae, F.; Sterk, H. Assignment of proton NMR
resonances and conformational analysis of [Lys8]-vasopressin
homologues. Magn. Reson. Chem. 1991, 29, 580-586.
20) Yu, C.; Yang, T.-H.; Yeh, C.-J .; Chuang, L.-C. Combined use of
NMR, distance geometry, and restrained energy minimization
for the conformational analysis of 8-lysine-vasopressin. Can. J .
Chem. 1992, 70, 1950-1955.
used for the NOE distance restraints, and a square well
-
1
-2
potential with a force constant of 1 kcal mol rad was used
for the dihedral angle restraints. In all calculations, only
structures with no distance restraint violations larger than
(
0
5
.3 Å and no dihedral angle restraint violations larger than
° were accepted. All structure calculations were performed
on SGI O
2
workstations. Root mean square deviation values
(21) Nutz, K. I.; Fabian, W. M. F.; Sterk, H. Conformations of
1
triglycyllysylvasopressin: H NMR spectroscopic and molecular
and superimpositions were obtained using the backbone and
heavy atoms of residues 1-6. The average structures of both
peptides were calculated in X-PLOR from the accepted struc-
tures and were then used as comparison coordinate sets for
the rmsd calculations.
dynamics study. Magn. Reson. Chem. 1993, 31, 481-488.
(
22) Mouillac, B.; Chini, B.; Balestre, M.-N.; Elands, J .; Trumpp-
Kallmeyer, S.; Hoflack, J .; Hibert, M.; J ard, S.; Barberis, C. The
binding site of neuropeptide vasopressin V1a receptor, evidence
for a major localization within transmembrane regions. J . Biol.
Chem. 1995, 270, 25771-25777.
Ack n ow led gm en t. This work was funded by grants
from the Swedish Research Council, the Biotechnology
Fund at Umeå University, and the G o¨ ran Gustafsson
Foundation for Research in Natural Sciences and Medi-
cine.
(23) Cort, J . H.; Fric, I.; Carlsson, L.; Gillessen, D.; Bystricky, S.;
Skopkova, J .; Gut, V.; Studer, R. O.; Mulder, J . L.; Blaha, K.
Biological and chiroptical sequelae of graded alkyl substitutions
in the vasopressin ring. Mol. Pharmacol. 1976, 12, 313-321.
(24) J ohansson, B.; Ferring, A.B. Unpublished results.
(
25) Kihlberg, J .; A° hman, J .; Walse, B.; Drakenberg, T.; Nilsson, A.;
S o¨ derberg-Ahlm, C.; Bengtsson, B.; Olsson, H. Glycosylated
peptide hormones: Pharmacological properties and conforma-
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