T. Dalvi et al.
Bioorganic & Medicinal Chemistry Letters 42 (2021) 127999
diseases with anti-inflammatory activity.19 Triazole based compounds
are now under study for the treatment of many neurological disorders
such as epilepsy. Di-triazole based compounds have been explored
recently as therapeutics for the treatment of Alzheimer’s disease.20
Recently, triazole based compound QTC-4-MeOBnE was selected
through virtual screening and shown promising results in-vivo.21 We
have selected triazole as part of the scaffold in aniticipation that it may
exert anti-inflammatory/anti-oxidant activity and simultaneously can
be explored for the metal chelation due to the presence of heteroatom.
Therefore, by placing suitable functional group adjacent to 1,2,3 triazole
moiety can lead to effective metal chelation. Therefore, triazole amides
and triazole methylamines are incorporated as linker, which can hold
the two aromatic rings at optimum distance for Aβ interaction and
simultaneously chelate the metal and demonstrate anti-oxidant/anti-
inflammatory properties (Fig. 1).
Fig. 1. Designing of the scaffold to target multiple pathways related to AD.
therapeutic strategy which can engage multiple signalling pathways
simultaneously. Multi-target directed ligand (MTDL) is a strategy in
drug discovery process, where the single molecule is designed with its
multiple pharmacophoric properties to engage multiple targets simul-
taneously.11 There is a substantial portion of the approved drugs are
multi-target-directed drugs for other diseases also.12
Hexafluorocarbinol group is an interesting pharmacophore with
hydroxyl group flanked by two CF3 group and has been explored pre-
viously for Aβ inhibition. HFIP (hexaflouroisopropanol) is used as sol-
vent for disaggregating the Aβ peptide and molecules containing this
functional moiety are found as bioactive. Therefore, incorporation of
hexafluorocarbinol in the molecule may increase the disaggregation
properties of molecule and due to the presence of multiple fluorines it
may increase the cellular permeability and plasma half-life of the drug.
We have designed two series of compounds (series A, containing
triazole amide and series B containing triazole amine) for further syn-
thesis and in-vitro evaluations
Amyloid aggregation is the major hallmark for AD and the aggre-
gation process is induced by many biological factors. The hydrophobic
core with sequence KLVFF undergoes self aggregation and produce toxic
oligomers and plaues.13 Therefore, controlling amyloid aggregation
through those pathways can be effective. Mitochondrial dysfunction and
oxidative stress are key players in the pathogenesis of Alzheimer’s dis-
ease.14 Aβ species can also induce oxidative stress, by entering into
mitochondria and increasing the production of reactive oxygen species
(ROS), which, in turn, damage important macromolecules.15 The Zn2+
and Cu2+ ions can bind to Aβ and induce further formation of amyloid
aggregates.16,17 Based on the disease molecular mechanism of action, it
is postulated molecules which can inhibit Aβ aggregation by blocking
the hydrophobic core and exhibit antioxidant/anti-inflammatory prop-
erties with metal chelation ability can be a potential therapeutic mole-
cule to treat AD.
Molecular docking was performed prior to the synthesis of com-
pounds. The compounds were docked against Aβ42 Monomer (PDB ID-
1IYT) using Autodock 4.2 software as discussed in detail in the meth-
odology section. The purpose of docking was to investigate whether the
compounds acquire the best possible interaction with the monomer
particularly with the hydrophobic core bearing the KLVFF sequence (AA
16–20) which is considered to be the self-recognition site. During the
nucleation phase, Aβ42 monomers aggregate to form the oligomers and
then form fibrils via this self-recognition site.
The driving force for aggregation of Amyloid beta (Aβ) peptide is the
core residue penta-peptide fragment (KLVFF). Moreover, the bis-
phenylalanine (FF) dipeptide sequence undergoes self-aggregation to
form diverse nano-structures which is now currently utilized in
designing novel nano material.18 Many aromatic compounds including
curcumin have found to inhibit Aβ aggregation efficiently and they have
common feature of two aromatic rings separated by an optimal linker.
Therefore, we have incorporated two aromatic residues in our scaffold,
anticipating that aromatic rings may interact with the phenyl alanine
We have performed docking studies with representative compounds
from both series (1a from Series A and 2a from Series B). Four different
grids are generated and compounds are docked (Table 1).
Representative examples from both the series have demonstrated
similar binding affinity with slightly preferential activity towards grid 2
which contain the hydrophobic core fragment KLVFF.
A closer analysis of interaction pattern of 1a and 2a suggested that,
the hexafluorocarbinol group present in the compound, exhibits certain
specific interactions with the amino acids of the peptide and anchors the
compound in such a way that the phenyl ring of the scaffold which in-
teracts with the aggregation prone diphenylalanine FF (Phe19 and 20)
motif. Hexafluorocarbinol group plays an important role since without
this group, although molecule binds with Aβ, but the aggregation prone
diphenyl alanine (FF) remains exposed (Fig. 2). These phenylalanine
residues are shown to play a predominant role in the fibril formation and
aggregation process through pi-pi stacking type of interactions.22,23
These residues when blocked, interactions of one monomer with the
other may thus be prevented which will in turn hinder the Aβ aggre-
gation process.
residue of KLVFF fragment of Aβ peptide through π-π-interaction and
block the aggregation.
Triazoles as potential pharmacophore for the neurodegenerative
Table 1
Binding energy of compound1a and 2a.
Furthermore, other favorable interactions such as electrostatic,
hydrogen bonding and Van der Waals types of interactions are observed.
The difference or change in the intermolecular interactions and
binding energy was evaluated with the positional switch of the hexa-
fluorocarbinol (HFC) group. Similar pattern of interactions is observed
for the compound 1g (Fig. 4).
Compound
1a
Grid
Binding Energy
(Kcal/mol)
1
2
3
4
1
2
3
4
ꢀ 4.12
ꢀ 4.73
ꢀ 4.58
ꢀ 3.41
ꢀ 4.29
ꢀ 4.69
ꢀ 3.84
ꢀ 3.61
In case of 1g, the phenyl group attached to amide was found to be
engaged with Phe19 instead of the phenyl attached to triazole. It also
retained all the conventional interactions as 1a.
2a
When amide was replaced with methylamine, compound 2a has
demonstrated similar interaction with preferential binding at grid 2 and
retained favorable interaction with Phe19 (supporting information,
Grid 1: AA 1–10; Grid 2: AA 11–21; Grid 3 AA 22–31; Grid 4 AA 32–42.
2