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results with A20-OTU suggest the additional Ub unit appended
to position-6 abrogates hydrolytic cleavage by K48-linkage
selective DUBs. In the context of other linkage selective DUBs
such as AMSH, the presence of a Ub appendage at position 48
does not influence cleavage of the K63C-linkage as indicated by
the formation of Ub2 and Ub upon hydrolysis of the K48C,
K63C-linked trimer (Figure 4B). Additional work is necessary
to determine whether other branch points, e.g., K6C and K11C,
affect hydrolysis of K63C-linkages.
Our systematic examination of branched trimer topologies
suggests that branch points in a polyUb chain furnish a
regulatory mechanism for linkage-selective interactions. Con-
sistent with this analysis, K6-linkages are proposed to suppress
degradation of target proteins by 26S proteasomes.19b,24 In
principle, this could lead to the accumulation, and possibly
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stage for clearance by the lysosomal pathway.25 If the latter is
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polyUb chains, then toxic levels may begin to accrue in the cell:
this is a hallmark of many neurodegenerative diseases.
Interestingly, mixed K6-, K11-, and K48-linked polyUb chains
have been observed in Tau aggregates isolated from brain tissue
of individuals with Alzheimer’s disease.26
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In summary, the work described herein showcases the utility
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ASSOCIATED CONTENT
* Supporting Information
Detailed experimental procedures, characterization of products,
and structural analysis. This material is available free of charge
■
S
(19) (a) Kim, H. T.; Kim, K. P.; Lledias, F.; Kisselev, A. F.; Scaglione,
K. M.; Skowyra, D.; Gygi, S. P.; Goldberg, A. L. J. Biol. Chem. 2007,
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(20) Kim, H. T.; Kim, K. P.; Uchiki, T.; Gygi, S. P.; Goldberg, A. L.
EMBO J. 2009, 28, 1867.
AUTHOR INFORMATION
Corresponding Author
■
Notes
(21) Dong, K. C.; Helgason, E.; Yu, C.; Phu, L.; Arnott, D. P.;
Bosanac, I.; Compaan, D. M.; Huang, O. W.; Fedorova, A. V.;
Kirkpatrick, D. S.; Hymowitz, S. G.; Dueber, E. C. Structure 2011, 19,
1053.
(22) Reyes-Turcu, F. E.; Shanks, J. R.; Komander, D.; Wilkinson, K.
D. J. Biol. Chem. 2008, 283, 19581.
(23) Faesen, A. C.; Luna-Vargas, M. P.; Geurink, P. P.; Clerici, M.;
Merkx, R.; van Dijk, W. J.; Hameed, D. S.; El Oualid, F.; Ovaa, H.;
Sixma, T. K. Chem. Biol. 2011, 18, 1550.
The authors declare no competing financial interest.
ACKNOWLEDGMENTS
■
The authors gratefully acknowledge Profs. S. H. Gellman, M. K.
Mahanthappa, and R. T. Raines for helpful discussions and
critical reading of the manuscript. Financial support is provided
by UW-Madison, the Greater Milwaukee Shaw Scientist
Program, and Susan G. Komen for Cure.
(24) (a) Sato, K.; Hayami, R.; Wu, W.; Nishikawa, T.; Nishikawa, H.;
Okuda, Y.; Ogata, H.; Fukuda, M.; Ohta, T. J. Biol. Chem. 2004, 279,
30919. (b) Wu-Baer, F.; Lagrazon, K.; Yuan, W.; Baer, R. J. Biol. Chem.
2003, 278, 34743. (c) Yu, X.; Fu, S.; Lai, M.; Baer, R.; Chen, J. Genes
Dev. 2006, 20, 1721.
(25) Pandey, U. B.; Nie, Z.; Batlevi, Y.; McCray, B. A.; Ritson, G. P.;
Nedelsky, N. B.; Schwartz, S. L.; DiProspero, N. A.; Knight, M. A.;
Schuldiner, O.; Padmanabhan, R.; Hild, M.; Berry, D. L.; Garza, D.;
Hubbert, C. C.; Yao, T. P.; Baehrecke, E. H.; Taylor, J. P. Nature 2007,
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