The Journal of Organic Chemistry
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After the organic phase was concentrated to dryness, the residue was
purified by silica gel chromatography, eluting with 4% MeOH in
CH2Cl2 containing 0.2% Et3N, to give 8 (143 mg, 86%) as white foam.
1H NMR (500 MHz) (CD3CN) δ: 10.05 (br, 1H), 8.65 (s, 1H), 7.76
removed under reduced pressure. The residue was purified by silica gel
chromatography, eluting with 0−10% methanol in dichloromethane,
1
to give 12 (112 mg, 92%) as a white solid. H NMR (500.1 MHz)
(DMSO-d6) δ: 11.35 (br, 1H), 8.55 (s, 1H), 8.03 (s, 1H), 6.31 (m,
1H), 5.85 (br, 1H), 5.78 (br, 1H), 5.20 (m, 1H), 5.14 (m, 2H), 4.44
(m, 2H), 4.34 (m, 1H), 3.97 (m, 1H), 3.62 (m, 2H), 3.34 (m, 1H),
3.14 (s, 3H), 3.01 (s, 6H). 13C NMR (125.8 MHz) (DMSO-d6) δ:
158.6, 158.5, 157.9, 157.8, 150.1, 149.5, 137.2, 133.5, 120.4, 120.2,
117.3, 116.4, 88.0, 87.5, 87.0, 82.7, 77.1, 71.1, 66.6, 65.9, 62.1, 61.6,
61.2, 49.0, 41.1, 35.0, 32.9, 30.2. 13C NMR (125.8 MHz) (CDCl3) δ:
158.4, 158.0, 157.9, 157.0, 156.5, 156.0, 150.0, 135.8, 134.9, 132.6,
132.2, 120.8, 120.6, 118.1, 117.5, 85.8, 85.2, 83.7, 72.6, 71.9, 66.5, 66.4,
64.6, 64.0, 62.3, 61.1, 41.3, 35.1, 33.2, 32.7, 17.4, 17.3, 17.23, 17.21,
16.90, 16.86, 16.78, 13.21, 13.16, 12.8, 12.5. HRMS: calcd for
C18H26N7O6 [MH]+ 436.1945, found 436.1940.
(s, 1H), 7.51 (d, J = 7.5 Hz, 2H), 7.31−7.46 (m, 7H), 6.91 (m, 4H),
6.27 (d, J = 8.5 Hz, 1H), 4.38 (d, J = 5.0 Hz, 1H), 4.21 (m, 1H), 3.82
(s, 6H), 3.46 (m, 2H), 3.28 (m, 1H), 3.13 (s, 3H), 3.08 (s, 3H), 2.26
(s, 6H). 13C NMR (125.8 MHz) (CD3CN) δ: 158.6, 158.4, 157.9,
157.6, 150.3, 144.9, 135.9, 135.7, 135.6, 130.0, 127.9, 127.8, 126.8,
119.8, 113.0, 86.3, 84.8, 84.2, 71.7, 71.0, 64.4, 54.8, 43.1, 40.6, 34.3.
HRMS: calcd for C36H41N7O6Na [MNa]+ 690.3011, found 690.3022.
2′-Dimethylamino-5′-O-4,4′-dimethoxytrityl-N2-dimethyla-
minomethylene-2′-deoxyguanosine 3′-O-(2-Cyanoethyl-N,N-
diisopropyl)phosphoramidite (9). 2′-Dimethylamino-5′-O-4,4′-di-
methoxytrityl-N2-dimethylaminomethylene-2′-deoxyguanosine (8)
(120 mg, 0.17 mmol) was dissolved in dry CH2Cl2 (5 mL) and 1-
methylimidozale (2.90 mg, 35.0 μmol). N,N-Diisopropylethylamine
(126 mg, 0.68 mmol) was added to the stirring solution followed by 2-
cyanoethyl N,N-(diisopropylchloro)phosphoramidite (2.0 equiv).
After being stirred at room temperature for 1 h, the reaction mixture
was diluted with CH2Cl2 (50 mL) and washed with 5% NaHCO3 and
brine. After dried over sodium sulfate and filtered, the filtrate was
concentrated to dryness. The residue was purified by silica gel
chromatography, eluting with 12% acetone in CH2Cl2 containing 0.2%
Et3N, to give 9 (115 mg, 78%) as a colorless oil. 1H NMR (500 MHz)
(CD3CN) δ: 10.03 (br, 1H), 8.62 (m, 1H), 7.78 (m, 1H), 7.50 (m,
2H), 7.35−7.40 (m, 7H), 6.91 (m, 4H), 6.36 (m, 1H), 4.92 (m, 1H),
4.01−4.42 (m, 2H), 3.82 (m, 6H), 3.55 (m, 2H), 3.50 (m, 1H), 3.24
(m, 1H), 3.09−3.06 (m, 6H), 2.78 (m, 1H), 2.72 (m, 1H), 2.32 (m,
6H), 1.30 (m, 12H). 31P NMR (202.4 MHz) (CD3CN) δ: 141.3,
141.5. HRMS: calcd for C45H59N9O7P [MH]+ 868.4275, found
868.4268.
2′-N-Methyl-N-alloxycarbonyl-N2-dimethylaminomethy-
lene-5′-O-4,4′-dimethoxytrityl-2′-deoxyguanosine (13). 2′-N-
Methyl-N-alloxycarbonyl-N2-dimethylaminomethylene-2′-deoxyguano-
sine (12) (100 mg, 0.23 mmol) was coevaporated with anhydrous
pyridine (10 mL × 20) and then dissolved in pyridine (8 mL), and
4,4′-dimethoxytrityl chloride (116 mg, 0.34 mmol, 1.5 equiv) was
added. After being stirred overnight at room temperature, the reaction
mixture was diluted with MeOH (1 mL) and stirred for an additional 5
min. The reaction mixture was concentrated to dryness under vacuum
and coevaporated with toluene (20 mL × 2). Water was added to the
resulting residue, and the mixture was extracted with CH2Cl2. The
organic phase was washed consecutively with 5% sodium bicarbonate,
water, and brine and then dried over sodium sulfate. After the organic
phase was concentrated to dryness, the residue was purified by silica
gel chromatography, eluting with 0−3% MeOH in CH2Cl2 containing
0.2% Et3N, to give 13 (137 mg, 81%) as white foam. 1H NMR (500.1
MHz) (CD3CN) δ: 13C NMR (125.8 MHz) (CD3CN) δ: 10.06 (br,
1H), 8.57 (s, 1H), 7.73 (m, 1H), 7.42 (m, 2H), 7.15−7.30 (m, 7H),
6.79 (m, 4H), 6.41 (m, 1H), 5.85 (br, 1H), 4.955.30 (m, 3H), 4.53 (m,
2H), 4.44 (m, 1H), 4.20 (m, 1H), 3.72 (s, 6H), 3.35 (m, 1H), 3.27 (m,
1H), 3.08 (s, 3H), 3.00 (s, 3H), 2.96 (s, 3H). 13C NMR (125.8 MHz)
(CD3CN) δ: 158.6, 158.5, 158.3, 157.9, 157.4, 150.4, 144.9, 135.70,
135.67, 133.2, 130.0, 129.9, 127.9, 127.8, 126.8, 120.1, 116.4, 113.0,
86.2, 85.5, 83.1, 65.9, 64.2, 54.8, 40.6, 34.2, 32.7. HRMS: calcd for
C39H44N7O8 [MH]+ 738.3251, found 738.3232.
2′-Methylamino-3′,5′-O-(1,1,3,3-tetraisopropyldisiloxane-
1,3-diyl)-N2-dimethylaminomethylene-2′-deoxyguanosine
(10). To a solution of 2′-methylamino-3′,5′-O-(1,1,3,3-tetraisopropyl-
disiloxane-1,3-diyl)-2′-deoxyguanosine (3, 264 mg, 0.50 mmol) in
methanol (10 mL) was added DMF−DMA (1 mL). After being stirred
overnight at rt, all the volatile components were removed under
reduced pressure. The residue was purified by silica gel chromatog-
raphy, eluting with 5% methanol in dichloromethane, to give 10 (234
mg, 88%) as white solid. 1H NMR (500.1 MHz) (CDCl3) δ: 9.94 (br,
1H), 8.63 (s, 1H), 7.94 (s, 1H), 6.02 (s, 1H), 4.65 (m, 2H), 4.20 (m,
1H), 4.08 (m, 1H), 3.23 (r. 1H), 3.20 (s, 3H), 3.14 (s, 3H), 2.70 (s,
3H), 1.02−1.16 (m, 28H). 13C NMR (125.8 MHz) (CDCl3) δ: 158.0,
158.0, 156.7, 149.2, 135.5, 120.6, 86.9, 82.3, 68.7, 67.8, 60.6, 41.4, 35.1,
17.4, 17.3, 17.2, 17.0, 16.95, 16.88, 16.8, 13.3, 12.91, 12.86, 12.47.
HRMS: calcd for C26H47N7O5Si2 [MH]+ 594.3272, found 594.3256.
2′-N-Methyl-N-alloxycarbonyl-3′,5′-O-(1,1,3,3-tetraisopro-
pyldisiloxane-1,3-diyl)-N2-dimethylaminomethylene-2′-deox-
yguanosine (11). To a solution of 2′-methylamino-3′,5′-O-(1,1,3,3-
tetraisopropyldisiloxane-1,3-diyl)-N2-dimethylaminomethylene-2′-de-
oxyguanosine (10, 220 mg, 0.37 mmol) in THF (10 mL) was added
allyloxycarbonyloxybenzotriazolyl (122 mg, 1.5 equiv) and N,N-
diisopropylethylamine (0.2 mL). The mixture was stirred at rt for 1
h, and MeOH (0.5 mL) was added to quench the reaction. All of the
volatile components were removed under reduced pressure. The
residue was purified by silica gel chromatography, eluting with 4%
2′-N-Methyl-N-alloxycarbonyl-N2-dimethylaminomethy-
lene-5′-O-4,4′-dimethoxytrityl-2′-deoxyguanosine (2-Cya-
noethyl-N,N-diisopropyl)phosphoramidite (14). 2′-N-Methyl-N-
alloxycarbonyl-N2-dimethylaminomethylene-5′-O-4,4′-dimethoxytrityl-
2′-deoxyguanosine (13, 120 mg, 0.16 mmol) was dissolved in dry
CH2Cl2 (5 mL) and 1-methylimidazole (2.90 mg, 35.0 μmol). N,N-
Diisopropylethylamine (120 mg, 0.64 mmol) was added to the stirring
solution followed by 2-cyanoethyl N,N-(diisopropylchloro)-
phosphoramidite (2.0 equiv). After being stirred at room temperature
for 1 h, the reaction mixture was diluted with dichloromethane (50
mL), and the mixture was washed with 5% aqueous sodium carbonate
and brine, dried over sodium sulfate, and concentrated. The residue
was purified by silica gel chromatography, eluting with 12% acetone in
CH2Cl2 containing 0.2% Et3N, to give 14 (119 mg, 78%) as a colorless
oil. 31P NMR (202.4 MHz) (CD3CN) δ: 149.95 and 149.66, 149.34.
HRMS: calcd for C48H60N9O9P, [M]+ 937.4252, found 937.4288.
2′-N-Methyl-N-phenoxyacetyl-3′,5′-O-(1,1,3,3-tetraisopro-
pyldisiloxane-1,3-diyl)-N2-dimethylaminomethylene-2′-deox-
yguanosine (I-3). To a solution of 2′-methylamino-3′,5′-O-(1,1,3,3-
tetraisopropyldisiloxane-1,3-diyl)-N2-dimethylaminomethylene-2′-de-
oxyguanosine (10, 178 mg, 0.30 mmol) in CH2Cl2 (10 mL) and
pyridine (10 mL) at 0 °C under argon were added phenoxyacetyl
chloride (47 μL, 1.1 equiv) and N,N-diisopropylethylamine (0.2 mL).
The mixture was stirred at 0 °C for 1 h, and MeOH (0.5 mL) was
added to quench the reaction. All of the volatile components were
removed under reduced pressure. The residue was coevaporated with
toluene. CH2Cl2 was added to the resulting residue, and the mixture
was washed consecutively with 5% sodium bicarbonate, water, and
brine and then dried over sodium sulfate. After the organic phase was
concentrated to dryness, the residue was purified by silica gel
1
methanol in dichloromethane, to give 11 (216 mg, 86%). H NMR
(500.1 MHz) (CDCl3) δ: 9.75 (br, 1H), 8.61 (s, 0.75H), 8.50 (s,
0.25H), 8.04 (s, 1H), 6.16 (m, 1H), 5.86 (m, 0.75H), 5.75 (m, 0.25H),
5.42 (m, 0.75H), 5.26 (m, 0.25H), 5.15 (m, 2H), 4.62 (m, 2H), 4.57
(m, 1H), 4.09 (m, 2H), 3.82 (m, 0.25H), 3.80 (m, 0.75), 3.17 (s,
2.25H), 3.12 (s, 0.75H), 3.07 (s, 6H), 0.93−1.03 (m, 28H). HRMS:
calcd for C30H51N7O7Si2 [MH]+ 678.3467, found 678.3458.
2′-N-Methyl-N-alloxycarbonyl-N2-dimethylaminomethy-
lene-2′-deoxyguanosine (12). To a solution of 2′-N-methyl-N-
alloxycarbonyl-3′,5′-O-(1,1,3,3-tetraisopropyldisiloxane-1,3-diyl)-N2-di-
methylaminomethylene-2′-deoxyguanosine (11) (190 mg, 0.28 mmol)
in THF (10 mL) was added TBAF (1 M, 0.28 mL), and the mixture
was stirred at rt for 15 min. All of the volatile components were
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dx.doi.org/10.1021/jo201364x|J. Org. Chem. 2011, 76, 8718−8725