Archaeal Lipid Derivatives
FULL PAPER
(12): An aqueous solution of KBr (670 mL, 0.5m)and TEMPO (1 mg,
added and the organic phase was washed with water. The combined or-
ganic phases were dried (MgSO4)and concentrated under reduced pres-
sure. Flash chromatography on silica gel (CH2Cl2/MeOH, 9:1)gave 16 as
a yellow oil (60 mg, 90%). Rf =0.2 (CH2Cl2/MeOH, 9:1); [a]2D0 =À2.6
(c=1 in CH2Cl2); 1H NMR (400 MHz, CDCl3): d=0.83–0.89 (m, 31H),
1.04–1.45 (m, 81H), 1.48–1.56 (m, 8H), 1.71–1.76 (m, 3H), 1.91–1.98 (dt,
J=12.4, 8.0 Hz, 1H), 2.13–2.22 (m, 2H), 3.27–3.29 (d, J=6.8 Hz, 4H),
3.37–3.39 (t, J=6.8 Hz, 4H), 3.40–3.44 (t, J=6.8 Hz, 2H), 3.44–3.57 (m,
10H), 3.57–3.60 (m, 7H), 3.61–3.69 (m, 37H), 3.75–3.78 (dd, J=2.4,
10.4 Hz, 1H), 3.88–3.90 (dd, J=2.4, 6.0 Hz, 1H), 4.55 (s, 2H), 7.04 (brs,
1H), 7.28–7.34 ppm (m, 5H); 13C NMR (100 MHz, CDCl3): d=19.62,
19.68, 19.75, 22.63, 22.72, 24.49, 24.81, 26.06, 26.13, 26.18, 26.19, 29.52,
29.53, 29.56, 29.64, 29.65, 28.86, 27.97, 29.74, 32.79, 33.93, 37.29–37.49,
39.36, 38.71, 39.73, 50.71, 68.87, 69.86, 70.06, 70.30, 70.59–70.73, 71.10,
71.66, 71.73, 73.34, 75.63, 77.93, 80.53, 127.48, 127.56, 128.29, 138.43,
170.60 ppm; IR (neat): n˜ =3583, 3473, 2925–2855, 2103, 1676, 1523, 1463,
0.006 mmol, 0.02 equiv)were added to
a
solution of
11 (400 mg,
0.31 mmol, 1 equiv)in EtOAc (5 mL.) A 12% aqueous solution of
NaOCl (200 mL)was added slowly at 0 8C. After 30 min at room tempera-
ture, the reaction mixture was acidified with 5% aqueous HCl to pH<3–
4. Then 12% aqueous NaClO2 (140 mL)was added slowly. The reaction
mixture was stirred at room temperature for 2 h and the aqueous phase
was extracted with EtOAc. The combined organic phases were washed
with brine and dried (MgSO4). Flash chromatography on silica gel (PE/
EtOAc, 9:1 then 7:3)gave 12 as a colourless oil (297 mg, 73%). Rf =0.2
(PE/EtOAc, 9:1); [a]D20 =À1.0 (c=1 in CH2Cl2); 1H NMR (400 MHz,
CDCl3): d=0.81–0.90 (m, 31H), 1.03–1.38 (m, 81H), 1.49–1.59 (m, 8H),
1.69–1.77 (m, 3H), 1.91–1.98 (dt, J=12.4, 8.0 Hz, 1H), 2.16–2.20 (m,
2H), 3.28–3.30 (d, J=6.8 Hz, 4H), 3.37–3.41 (t, J=6.8 Hz, 2H), 3.43–3.44
(t, J=6.8 Hz, 2H), 3.49–3.54 (m, 6H), 3.56–3.61 (m, 5H), 3.65–3.72 (m,
3H), 3.77–3.80 (dd, J=2.4, 10.4 Hz, 1H), 4.02–4.06 (q, J=3.2 Hz, 1H),
4.55 (s, 2H), 7.26–7.33 ppm (m, 5H); 13C NMR (100 MHz, CDCl3): d=
19.62, 19.63, 19.68, 19.75, 22.63, 22.71, 24.37, 24.47, 24.49, 24.80, 25.95,
26.14, 26.15, 26.18, 29.38, 29.42, 29.45, 29.52, 29.63, 29.67, 29.68, 29.71,
29.76, 28.85, 27.97, 29.82, 32.78, 32.80, 33.93, 37.11–37.52, 39.37, 39.73,
68.88, 69.94, 70.32, 70.52, 70.75, 71.14, 71.67, 72.05, 73.35, 75.61, 77.96,
78.61, 127.48, 127.57, 128.28, 138.43, 171.72 ppm; IR (neat): n˜ =3582,
2925–2854, 1733, 1496, 1464, 1377, 1366, 1260, 1114, 1029, 937, 733–
666 cmÀ1; elemental analysis calcd (%)for C 84H158O9: C 76.89, H 12.14;
found: C 76.53, H 12.37.
1376, 1350, 1257, 1114, 1029, 734–666 cmÀ1
.
H2N-PEG570-tetraether 17: Palladium on activated carbon was added to a
solution of 16 (145 mg, 0.078 mmol, 1 equiv)in CHCl 3/MeOH (12 mL,
1:1). After 18 h at room temperature under a hydrogen atmosphere, the
suspension was filtered through Celite and the solvent was removed
under reduced pressure. Flash chromatography on silica gel (CH2Cl2/
MeOH, 95:5)gave 17 as a colourless oil (70 mg, 51%). Rf =0.1 (CH2Cl2/
MeOH, 95:5); [a]2D0 =+4.4 (c=1 in CH2Cl2); 1H NMR (400 MHz,
CDCl3): d=0.83–0.88 (m, 31H), 1.02–1.31 (m, 81H), 1.42–1.58 (m, 8H),
1.69–1.76 (m, 3H), 1.93–1.98 (dt, J=12.4, 8.0 Hz, 1H), 2.14–2.22 (m,
2H), 3.27–3.29 (d, J=6.8 Hz, 4H), 3.37–3.40 (t, J=6.8 Hz, 2H), 3.42–3.44
(t, J=6.8 Hz, 2H), 3.45–3.57 (m, 12H), 3.57–3.60 (m, 7H), 3.63–3.69 (m,
37H), 3.75–3.78 (m, 1H), 3.89–3.90 (m, 1H), 3.93–3.94 (m, 2H), 7.04 ppm
(brs, 1H); 13C NMR (100 MHz, CDCl3): d=19.61, 19.68, 19.75, 22.62,
22.71, 24.35, 24.46, 24.79, 26.06, 26.10, 26.18, 26.19, 29.47–29.73, 28.85,
27.96, 29.82, 29.88, 32.78, 32.81, 33.93, 37.05–37.48, 39.36, 38.72, 39.72,
63.09, 66.94, 68.62, 69.85, 70.09, 70.34, 69.70, 69.77, 69.88, 70.00, 70.17,
70.21, 70.36–70.61, 71.14, 71.72, 70.92, 71.54, 71.85, 75.62, 78.24,
80.51 ppm; IR (neat): n˜ =3420, 2923–2854, 1661, 1530, 1463, 1377, 1350,
1250, 1110, 734–666 cmÀ1; HRMS (ESI): m/z: calcd for C101H202O19N2
[M+H]+: 1748.4980; found: 1748.4943.
N3-PEG570-diether 14: DIEA (149 mL, 0.9 mmol, 1.3 equiv)was added to
a mixture of 6 (460 mg, 0.9 mmol, 1 equiv)and TBTU (321 mg, 1 mmol,
1.3 equiv)in dry CH 2Cl2 (15 mL)under a nitrogen atmosphere. After
20 min at room temperature, a solution of N3-PEG570-NH2 13 (400 mg,
0.7 mmol, 1 equiv)in dry CH Cl2 (3 mL)was added and the reaction mix-
2
ture was stirred for 4 d. An aqueous solution of 1N HCl was added and
the organic phase was washed with water. The combined organic phases
were dried (MgSO4)and concentrated under reduced pressure. Flash
chromatography on silica gel (EtOAc/MeOH, 9:1)gave 14 as a viscous
yellow oil (941 mg, 93%). Rf =0.3 (EtOAc/MeOH, 9:1); [a]2D0 =À4.9 (c=
1 in CH2Cl2); 1H NMR (400 MHz, CDCl3): d=0.83–0.87 (m, 18H), 1.04–
1.78 (m, 52H), 3.37–3.40 (m, 2H), 3.41–3.50 (m, 4H), 3.53–3.57 (m, 4H),
3.58–3.69 (m, 43H), 3.75–3.78 (m, 1H), 3.88–3.90 (dd, J=2.51, 5.92 Hz,
1H), 7.02–7.05 ppm (m, 1H); 13C NMR (100 MHz, CDCl3): d=14.10,
19.58, 19.65, 19.72, 22.60, 22.69, 22.66, 24.36, 24.47, 24.78, 26.03, 27.94,
29.84, 32.76, 32.78, 29.34, 29.46, 29.52, 29.63, 29.68, 31.89, 37.26, 37.36,
37.39, 37.45, 37.50, 39.32, 38.67, 50.63, 69.72, 69.83, 70.3–70.7, 71.47,
71.68, 80.48, 170.57 ppm; IR (neat): n˜ =2025–2856, 2103, 1678, 1524,
1463, 1300, 1250, 1117, 720–666 cmÀ1; elemental analysis calcd (%)for
C63H126O14N4: C 65.02, H 10.91, N 4.81; found: C 64.79, H 10.95, N 4.79.
FA-PEG570-diether 19:
A solution of FA (18; 13.7 mg, 0.032 mmol,
1.2 equiv)in dry DMSO (5 mL)was heated until all material was dis-
solved. TBTU (16.7 mg, 0.052 mmol, 2 equiv), DIEA (10.7 mL,
0.065 mmol, 2.5 equiv)and a solution of 15 (29.6 mg, 0.026, 1 equiv)in
dry DMSO (2 mL)were added at room temperature under a nitrogen at-
mosphere. After 48 h at 308C in the dark, the reaction mixture was
lyophilised. The residue was purified by dialysis (molecular weight cut-
off (MWCO)=1000 D)against DMSO to afford 19 as a yellow solid mix-
ture of 19a, 19g and 15 (1.4 mg, 4 mol%, 11:14:75). 1H NMR (400 MHz,
[D6]DMSO): d=0.80–0.83 (m, 18H), 1.05–1.71 (m, 52H), 1.84–1.99 (m,
1H), 2.19–2.33 (m, 3H), 3.17–3.49 (m, 53H), 3.66–3.70 (m, 1H), 3.80–
3.82 (m, 1H), 4.25–4.26 (m, 1H), 4.47–4.48 (d, J=5.6 Hz, 2H), 5.63 (s,
1H), 6.53–6.54 (d, J=8.8 Hz, 2H), 6.94 (t, J=6.4 Hz, 1H), 7.58–7.59 (d,
J=8.4 Hz, 2H), 9.24 ppm (s, 1H); 13C NMR (100 MHz, [D6]DMSO): d=
14.10, 19.58, 19.65, 19.72, 22.61, 22.71, 22.66, 24.34, 24.45, 24.76, 26.00,
27.95, 29.81, 29.85, 32.79, 29.34, 29.46, 29.52, 29.63, 29.68, 31.89, 37.26,
37.36, 37.39, 37.45, 37.50, 39.32, 26.25, 30.63, 38.70, 39.38, 46.25, 52.50,
65.63, 80.63, 111.88, 129.38, 166.96, 170.63 ppm; HRMS (ESI): m/z: calcd
for C82H145O19N9 [MÀ2H+3Na]+: 1627.0193; found: 1627.0189;
[MÀH+2Na]+: 1605.0374; found: 1605.0337.
FA-PEG570-tetraether 20: A solution of FA (18; 11 mg, 0.025 mmol,
2.5 equiv)in dry DMSO (3 mL)was heated until all material was dis-
solved. TBTU (16 mg, 0.05 mmol, 5 equiv), DIEA (8 mL, 0.05 mmol,
5 equiv)and a solution of 17 (17 mg, 0.01, 1 equiv)in dry DMSO (4 mL)
were added at room temperature under a nitrogen atmosphere. After
24 h at 408C in the dark, the reaction mixture was lyophilised. The resi-
due was purified by dialysis (MWCO=1000)against DMSO to give 20
as yellow solid mixture of 20a, 20g and 17 (11.6 mg, 56 mol%, 47:44:9).
1H NMR (400 MHz, [D6]DMSO): d=0.74–0.84 (m, 31H), 0.98–1.58 (m,
89H), 1.69–1.86 (m, 3H), 1.92–2.06 (m, 9H), 2.37–2.40 (m, 4H), 3.11–
3.68 (m, 64H), 4.48–4.51 (m, 3H), 4.55–4.57 (m, 2H), 4.58–4.63 (m, 1H),
H2N-PEG570-diether 15: PPh3 (157.37 mg, 0.6 mmol, 1.5 equiv)was added
portionwise to a stirred solution of 14 (591 mg, 0.4 mmol, 1 equiv)in
THF/H2O (6 mL, 1:1). After 18 h at room temperature, the solvent was
removed under reduced pressure. Flash chromatography on silica gel
(CH2Cl2/MeOH, 95:5)gave amine 15 as a viscous yellow oil (327 mg,
72%). Rf =0.3 (CH2Cl2/MeOH, 9:1); [a]2D0 =À6.6 (c=1 in CH2Cl2);
1H NMR (400 MHz, CDCl3): d=0.82–0.88 (m, 18H), 0.99–1.69 (m, 52H),
3.16–3.18 (m, 2H), 3.39–3.49 (m, 4H), 3.54–3.57 (m, 4H), 3.59–3.70 (m,
38H), 3.72–3.75 (m, 3H), 3.76–3.77 (m, 1H), 3.87–3.90 (m, 3H), 7.04–
7.06 ppm (m, 1H); 13C NMR (100 MHz, CDCl3): d=14.10, 19.58, 19.65,
19.72, 22.61, 22.71, 22.66, 24.34, 24.45, 24.76, 26.00, 27.95, 29.77, 29.85,
32.79, 29.32, 29.45, 29.54, 20.61, 29.66, 31.88, 37.23, 37.34, 37.37, 37.43,
39.31, 38.70, 40.45, 66.89, 69.72–70.53, 71.45, 71.70, 80.47, 170.63 ppm; IR
(neat): n˜ =3426, 2024–2855, 1674, 1524, 1463, 1257, 1114, 714–666 cmÀ1
;
HRMS (ESI): m/z: calcd for C63H128O14N2 [M+H]+: 1137.9444; found:
1137.9438; elemental analysis calcd (%)for C 63H128O14N2·2H2O: C 64.47,
H 11.34, N 2.39; found: C 64.56, H 11.18, N 2.35.
N3-PEG570-tetraether 16: DIEA (8 mL, 0.046 mmol, 1.3 equiv)was added
to a mixture of 12 (55 mg, 0.042 mmol, 1.2 equiv)and TBTU (14 mg,
0.046 mmol, 1.3 equiv)in dry CH 2Cl2 (2 mL)under a nitrogen atmos-
phere. After 20 min at room temperature, a solution of N3-PEG570-NH2
13 (20 mg, 0.035 mmol, 1 equiv)in dry CH Cl2 (2 mL)was added and the
2
reaction mixture was stirred for 6 d. An aqueous solution of 1N HCl was
Chem. Eur. J. 2008, 14, 8330 – 8340
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