A retrospective interpretation of the binding mode of 3n was
derived from an x-ray crystal structure6 of the compound bound
to the renin active site. Of note, the Asp-binding aminoalkane
assumes a slightly altered orientation wherein the plane of the
propyl chain is nearly orthogonal to the propyl chain of 3p in its
two Asp carboxylates, and this result underscores the importance
of the interaction in stabilizing the renin-ligand complex.
Extension of the methyl group (e.g. 3r) produced a modest
reduction (2-fold) in renin inhibition, and this result, which has
also been observed in other compounds of this class,3 can be
attributed to the fact that the additional atoms must orient away
from the wall of the binding pocket formed by Gly34 forcing a
mildly destabilizing gauche conformation within the
dialkylamino chain (Figure 3c).
Encouraged by the activity of 3p which utilizes a secondary
amine Asp-binding moiety and computational methods that
identified piperidines as surrogates for the cyclopentylamine
moiety (see Supporting Information), an exploration of
endocyclic amine replacements for this functionality was
conducted (Table 3). Similar to observations with the acyclic
series, the optimal distance between the piperidinamide core of
the molecule and the Asp-binding nitrogen is 3-4 carbon atoms,
as exemplified by compounds 4d (renin IC50 = 2.0 nM, PRA IC50
= 40 nM) and 4e (renin IC50 = 1.6 nM, PRA IC50 = 23 nM) which
respectively bear the CH2-3-piperidinyl and CH2-4-piperidinyl
groups and bind renin with efficiencies comparable to that of 3p
(renin IC50 = 1.3 nM, PRA IC50 = 20 nM). Departure from the
optimal distance in this series leads to more pronounced
reductions (>50-fold) in renin potency as a result of the reduced
conformational flexibility and larger size of the saturated
heterocycles compared to the simple alkylamines. An additional
consequence is that the positioning of the cyclic group upon the
alkyl linker is critical as exemplified in the series 4d (IC50 = 2.0
nM), 4c (IC50 = 6.3 nM), and 4f (IC50 = 126 nM), which each
present the nitrogen at a distance 3 atoms beyond the carbonyl
group.
renin-bound conformation (Figure 3a).
This alternative
orientation, which is accommodated without affecting other
critical binding elements through a slight shift in the position and
angle of the piperidinamide group, more effectively directs the
hydroxyl group toward solvent and away from the hydrophobic
interior of the binding site (Figure 3a). More importantly, the
binding mode of 3n is accessible due to its lack of an N-Me
group, which would induce an energetically unfavorable fully
eclipsed (synperiplanar) conformation in the terminal region of
the aminoalkane as compared to the eclipsed (anticlinal)
conformation observed about the N-Me region of 3p in its renin-
bound orientation. Finally, the bound conformation of 3n allows
its hydroxyl group to maintain hydrogen bonds with its
neighboring carbonyl and amino groups forming a bicyclic
hydrogen-bonded structure (Figure 3b), which apparently
contributes productively to its binding to renin since disrupting
this pre-organized hydrogen-bonded network via O-methylation
produces a 3-fold reduction in activity (compare 3t, IC50 = 2.0
nM and 3u, IC50 = 5.0 nM, Table 4).
An x-ray crystal structure6 of 4e bound to renin was obtained
(Figure 4), and as expected from the structure-function results,
the CH2-4-piperidinyl group fits satisfactorily within the active
site without inducing unfavorable steric interactions or disturbing
the other binding elements within the molecule. In order to
adequately position its nitrogen atom between the two Asp
groups and simultaneously maintain the hydrogen bond with
Ser76 that anchors its carbonyl oxygen, the CH2-4-piperidinyl
group adopts a bisected conformation about its COCH2 bond,
thereby turning the piperidine inward to enable its interaction
with Asp32. This conformational feature is essential for
maximizing the potency of the endocyclic amine inhibitors as
those analogues which contain the methylene linker required to
allow this turn are exceptionally potent (4d, 4e, 4i, IC50 < 2 nM),
whereas those that lack this flexibility show reduced activity (e.g.
4c, IC50 = 6.3 nM).
More definitive support for the importance of the bisected
bond angle induced in compound 4e came by way of examining
the activity of several urea-linked Asp-binding alkylamines
(Table 3). Each of these compounds (5a-e) is unable to access
the bisected conformation observed for 4e, as the CONR1R2
bond is locked in an eclipsed orientation by virtue of the sp2-
character of the urea nitrogen. Accordingly, the direct analogue
of 4e exhibited a dramatically (>300-fold) reduced potency (5d,
IC50 = 500 nM) reflecting its inability to effectively bridge both
active site carboxylates. Conversely, urea-based analogues of
compounds that either lack the conformational flexibility of 4e
(e.g. 5c) or those that include additional rotatable bonds that may
overcome the limitations imposed by the urea bond angle (5a, 5b,
5e) display only modest reductions (1.35 fold) in their ability to
bind renin as compared to their amide-based counterparts (i.e.
4c, 3c, 3p, 4g, respectively).
Figure 3. (A) X-ray structure of 3n (cyan) bound to renin (3.2 Å)
in overlay with 3p (orange).6 (B) Bicyclic hydrogen-bonded
network of 3n. (C) Proposed binding mode of 3r.
A small set of analogues were synthesized to investigate the
effect of N-alkylation on renin potency in the newly developing
N-alkylamine series (3p-r, Table 2). N-methylation produced
3p, and the modification had little effect on potency against renin
(renin IC50 = 1.3 nM, PRA IC50 = 20 nM) but this alteration
provided a 2-fold reduction in Cyp3A4 inhibition (Table 4).
Although the origin of this effect is unknown, the result is
consistent with destabilization of a potential N-Fe interaction
between the amino group and the P450 heme cofactor. Within
renin, the methyl group is accommodated (Figure 2) without
interfering with the Asp binding via a shift in the orientation of
the propyl chain (see discussion above). While this shift induces
unfavorable conformational effects in 3p upon binding to renin
(e.g. Me-H eclipsing and twist-boat vs. chair piperidine), the
methyl group serves to shield the Asp-amine electrostatic
interaction from solvent, thereby compensating for these
energetic losses. N,N-dimethylation (3q) produced a substantial
reduction (500-fold) in renin activity, as anticipated, given that
such a modification would disrupt the observed bridging of the